Wall clock time and date at job start Tue Mar 31 2020 00:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35739 * 117.00149 * 2 1 4 4 C 1.39293 * 120.84461 * 359.97438 * 3 2 1 5 5 C 1.37946 * 119.09076 * 180.02562 * 4 3 2 6 6 N 1.31980 * 120.82597 * 0.02562 * 5 4 3 7 7 C 1.31948 * 121.86111 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.58754 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46887 * 248.24715 * 8 7 6 10 10 C 1.46904 * 110.99806 * 201.36247 * 9 8 7 11 11 C 1.50697 * 109.46825 * 169.99723 * 10 9 8 12 12 H 1.08000 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00105 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00181 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99690 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47184 * 90.00327 * 15 13 11 17 17 H 1.48498 * 109.46963 * 210.00013 * 15 13 11 18 18 H 1.48505 * 109.47296 * 330.00319 * 15 13 11 19 19 C 1.46902 * 111.00335 * 77.41113 * 9 8 7 20 20 C 1.53002 * 109.46571 * 286.45473 * 19 9 8 21 21 C 1.53005 * 109.46884 * 178.83438 * 20 19 9 22 22 C 1.53000 * 109.47489 * 298.83277 * 20 19 9 23 23 C 1.37987 * 120.82185 * 0.26841 * 7 6 5 24 24 H 1.09001 * 109.46925 * 60.00465 * 1 2 3 25 25 H 1.09007 * 109.47367 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47770 * 300.00230 * 1 2 3 27 27 H 1.07996 * 120.45106 * 0.03069 * 4 3 2 28 28 H 1.07997 * 119.58792 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47754 * 128.24487 * 8 7 6 30 30 H 1.09002 * 109.47145 * 8.23817 * 8 7 6 31 31 H 1.08997 * 109.47466 * 289.99405 * 10 9 8 32 32 H 1.08998 * 109.47328 * 50.00104 * 10 9 8 33 33 H 0.97003 * 119.99741 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.46987 * 166.45603 * 19 9 8 35 35 H 1.08992 * 109.47115 * 46.45380 * 19 9 8 36 36 H 1.09002 * 109.47379 * 58.84161 * 20 19 9 37 37 H 1.09002 * 109.46949 * 59.99873 * 21 20 19 38 38 H 1.08999 * 109.47179 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.46906 * 300.00170 * 21 20 19 40 40 H 1.09003 * 109.46834 * 60.00115 * 22 20 19 41 41 H 1.08999 * 109.47153 * 180.02562 * 22 20 19 42 42 H 1.09002 * 109.47053 * 300.00562 * 22 20 19 43 43 H 1.08009 * 120.45096 * 179.70699 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9675 3.5981 -0.0011 6 7 3.2865 3.6457 -0.0016 7 6 4.0230 2.5510 -0.0021 8 6 5.5256 2.6651 -0.0021 9 7 6.0527 2.1910 -1.2887 10 6 7.4656 1.8067 -1.1693 11 6 7.9023 1.1017 -2.4276 12 1 7.2005 0.9535 -3.2350 13 6 9.1977 0.6448 -2.5477 14 7 9.5787 0.0291 -3.6455 15 14 10.4114 0.9004 -1.1509 16 1 10.3518 -0.2591 -0.2249 17 1 11.7842 1.0221 -1.7041 18 1 10.0631 2.1414 -0.4133 19 6 5.8692 3.2027 -2.3379 20 6 4.3934 3.2613 -2.7371 21 6 4.1974 4.3353 -3.8092 22 6 3.9606 1.9026 -3.2914 23 6 3.4345 1.3029 -0.0077 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2244 2.3566 -0.0005 28 1 1.4007 4.5173 -0.0011 29 1 5.9362 2.0580 0.8047 30 1 5.8109 3.7067 0.1457 31 1 8.0738 2.6992 -1.0232 32 1 7.5897 1.1388 -0.3169 33 1 10.4902 -0.2919 -3.7301 34 1 6.4707 2.9376 -3.2074 35 1 6.1830 4.1766 -1.9623 36 1 3.7899 3.5062 -1.8631 37 1 4.8009 4.0905 -4.6832 38 1 3.1460 4.3774 -4.0933 39 1 4.5058 5.3034 -3.4143 40 1 4.1002 1.1375 -2.5277 41 1 2.9093 1.9445 -3.5763 42 1 4.5641 1.6578 -4.1655 43 1 4.0432 0.4107 -0.0128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329140157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:39 Heat of formation + Delta-G solvation = -14.081889 kcal Electronic energy + Delta-G solvation = -22642.486634 eV Core-core repulsion = 19494.664839 eV Total energy + Delta-G solvation = -3147.821795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.74496 -39.75235 -38.45515 -35.60056 -34.55897 -32.76286 -32.43577 -29.84651 -28.55371 -27.93733 -27.42797 -25.65214 -24.31044 -22.81382 -22.01356 -20.80416 -19.12937 -18.66472 -17.96322 -17.04860 -16.69020 -16.60228 -16.29965 -16.02266 -15.57133 -15.25944 -15.10841 -14.70064 -14.55418 -14.33187 -14.20010 -13.86415 -13.53053 -13.20178 -13.04885 -12.89431 -12.62467 -12.50700 -12.47463 -12.37220 -12.04745 -11.87827 -11.73124 -11.52994 -11.41798 -11.14405 -10.74509 -10.46674 -9.88547 -9.68523 -9.03128 -8.24515 -6.27012 0.18157 0.43327 1.37098 1.38304 1.48803 2.24047 2.37093 2.74891 3.08771 3.19636 3.57913 3.78089 3.96939 4.04421 4.17850 4.24940 4.28774 4.37449 4.38609 4.40266 4.49999 4.59574 4.67727 4.73744 4.77371 4.81967 4.92571 4.93895 5.01171 5.02742 5.06333 5.12941 5.16728 5.19128 5.27526 5.52920 5.56077 5.60504 5.67751 6.02589 6.32222 6.35639 6.65789 6.79485 7.13134 7.35857 8.92066 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.005135 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.085413 B = 5451.721210 C = 5825.209001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.160 3.840 4 C -0.258 4.258 5 C 0.130 3.870 6 N -0.520 5.520 7 C 0.178 3.822 8 C 0.094 3.906 9 N -0.527 5.527 10 C 0.171 3.829 11 C -0.508 4.508 12 H 0.038 0.962 13 C 0.009 3.991 14 N -0.949 5.949 15 Si 0.945 3.055 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.250 1.250 19 C 0.075 3.925 20 C -0.108 4.108 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.193 4.193 24 H 0.068 0.932 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.169 0.831 28 H 0.189 0.811 29 H 0.092 0.908 30 H 0.053 0.947 31 H -0.011 1.011 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.302 6.505 9.436 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.107 3.893 4 C -0.278 4.278 5 C -0.027 4.027 6 N -0.235 5.235 7 C 0.043 3.957 8 C -0.034 4.034 9 N -0.250 5.250 10 C 0.044 3.956 11 C -0.547 4.547 12 H 0.056 0.944 13 C -0.188 4.188 14 N -0.590 5.590 15 Si 0.768 3.232 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.174 1.174 19 C -0.053 4.053 20 C -0.126 4.126 21 C -0.194 4.194 22 C -0.180 4.180 23 C -0.215 4.215 24 H 0.087 0.913 25 H 0.136 0.864 26 H 0.092 0.908 27 H 0.187 0.813 28 H 0.206 0.794 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.007 0.993 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.924 6.559 9.228 22.916 hybrid contribution 0.935 -0.477 0.174 1.064 sum -18.990 6.081 9.402 22.045 Atomic orbital electron populations 1.23439 0.75700 1.05844 1.02806 1.86073 1.24166 1.26472 1.87755 1.19421 0.91987 0.85541 0.92397 1.22428 1.02735 0.92103 1.10575 1.23047 0.89324 0.98464 0.91869 1.67521 1.08242 1.31688 1.16031 1.20648 0.95657 0.87684 0.91726 1.21028 0.89450 1.00043 0.92916 1.61753 1.18919 1.39938 1.04433 1.19988 0.84858 0.94267 0.96448 1.21201 0.96120 1.35841 1.01511 0.94352 1.25798 1.00164 0.94525 0.98330 1.70054 1.18986 1.40921 1.29054 0.85753 0.77878 0.79974 0.79553 1.19003 1.21031 1.17386 1.22054 0.97011 0.91546 0.94727 1.21531 0.95640 0.95413 1.00048 1.21725 1.01667 0.98078 0.97959 1.21566 0.98906 0.97635 0.99938 1.21159 0.92694 0.99579 1.08058 0.91291 0.86429 0.90795 0.81312 0.79411 0.88961 0.92856 0.99305 0.94825 0.92573 0.93108 0.95719 0.88412 0.93895 0.91511 0.92396 0.93151 0.93146 0.95394 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.84 113.37 1.12 1.32 16 2 O -0.33 -7.97 10.51 -90.62 -0.95 -8.92 16 3 C 0.16 4.11 6.74 22.77 0.15 4.27 16 4 C -0.26 -5.02 9.11 22.45 0.20 -4.81 16 5 C 0.13 2.72 11.02 84.60 0.93 3.65 16 6 N -0.52 -14.62 8.35 -184.13 -1.54 -16.16 16 7 C 0.18 5.59 4.15 42.48 0.18 5.77 16 8 C 0.09 3.28 5.28 85.56 0.45 3.73 16 9 N -0.53 -22.15 3.69 -905.38 -3.34 -25.49 16 10 C 0.17 8.25 3.77 85.56 0.32 8.57 16 11 C -0.51 -29.59 8.82 25.60 0.23 -29.37 16 12 H 0.04 2.51 7.52 -2.91 -0.02 2.49 16 13 C 0.01 0.52 5.47 84.66 0.46 0.98 16 14 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 15 Si 0.94 44.35 27.47 68.60 1.88 46.23 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 19 C 0.07 3.05 4.24 86.30 0.37 3.42 16 20 C -0.11 -3.71 2.47 -10.79 -0.03 -3.73 16 21 C -0.14 -4.01 9.19 71.98 0.66 -3.35 16 22 C -0.12 -4.50 9.01 71.98 0.65 -3.85 16 23 C -0.19 -6.03 8.46 22.45 0.19 -5.84 16 24 H 0.07 0.72 7.71 -2.39 -0.02 0.70 16 25 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.07 0.67 7.71 -2.39 -0.02 0.65 16 27 H 0.17 1.98 6.47 -2.91 -0.02 1.96 16 28 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.09 3.02 7.70 -2.39 -0.02 3.00 16 30 H 0.05 1.82 7.70 -2.39 -0.02 1.80 16 31 H -0.01 -0.52 7.18 -2.39 -0.02 -0.53 16 32 H 0.03 1.57 7.24 -2.39 -0.02 1.55 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.05 2.44 6.58 -2.39 -0.02 2.42 16 35 H 0.02 0.97 7.76 -2.39 -0.02 0.95 16 36 H 0.10 3.20 3.64 -2.39 -0.01 3.19 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 2.02 6.34 -2.39 -0.02 2.00 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -70.39 339.12 3.16 -67.23 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.92 Total: 16.04 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 5.88 Total: -19.24 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.58 Total: -101.35 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.95 Total: -8.92 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -70.39 3.16 -67.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329140157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.152 kcal (2) G-P(sol) polarization free energy of solvation -70.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds