Wall clock time and date at job start Tue Mar 31 2020 00:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47403 * 2 1 4 4 C 1.52993 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.46913 * 305.81823 * 4 3 2 6 6 C 1.53009 * 109.47150 * 185.81963 * 4 3 2 7 7 N 1.46500 * 109.47129 * 179.97438 * 6 4 3 8 8 C 1.38818 * 119.99757 * 180.02562 * 7 6 4 9 9 C 1.39797 * 119.58447 * 359.72400 * 8 7 6 10 10 C 1.38605 * 119.48754 * 179.79032 * 9 8 7 11 11 C 1.38388 * 118.68209 * 0.48031 * 10 9 8 12 12 C 1.40552 * 119.14752 * 359.74730 * 11 10 9 13 13 C 1.41319 * 119.78315 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99825 * 0.02562 * 13 12 11 15 15 C 1.40030 * 119.99899 * 180.02562 * 13 12 11 16 16 N 1.30738 * 119.99876 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99657 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47641 * 59.99938 * 17 15 13 19 19 H 1.48495 * 109.46952 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46934 * 299.99800 * 17 15 13 21 21 N 1.31957 * 119.58376 * 180.02562 * 8 7 6 22 22 O 1.42897 * 109.47786 * 65.81605 * 4 3 2 23 23 C 1.42892 * 114.00267 * 258.90583 * 22 4 3 24 24 C 1.53002 * 109.47266 * 174.88985 * 23 22 4 25 25 H 1.09008 * 109.47428 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47135 * 300.00482 * 1 2 3 27 27 H 1.09000 * 109.47077 * 60.00516 * 1 2 3 28 28 H 1.09000 * 109.47135 * 239.99518 * 2 1 3 29 29 H 1.09000 * 109.47221 * 120.00020 * 2 1 3 30 30 H 1.08995 * 109.47120 * 59.96901 * 3 2 1 31 31 H 1.09001 * 109.46627 * 299.96635 * 3 2 1 32 32 H 1.08995 * 109.46753 * 299.99374 * 6 4 3 33 33 H 1.09002 * 109.46784 * 59.99486 * 6 4 3 34 34 H 0.97002 * 120.00334 * 359.97438 * 7 6 4 35 35 H 1.08000 * 120.25428 * 0.02562 * 9 8 7 36 36 H 1.08001 * 120.65682 * 180.22714 * 10 9 8 37 37 H 1.07996 * 120.42479 * 179.76746 * 11 10 9 38 38 H 0.97005 * 119.99873 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.47301 * 54.88609 * 23 22 4 40 40 H 1.09005 * 109.47481 * 294.88786 * 23 22 4 41 41 H 1.09000 * 109.47064 * 60.00084 * 24 23 22 42 42 H 1.08999 * 109.47044 * 299.99677 * 24 23 22 43 43 H 1.09003 * 109.46950 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 1 3.9329 0.8411 0.8343 6 6 4.0800 2.8776 0.1469 7 7 5.5450 2.8775 0.1482 8 6 6.2390 4.0734 0.2708 9 6 5.5312 5.2734 0.3868 10 6 6.2262 6.4659 0.5136 11 6 7.6096 6.4319 0.5113 12 6 8.2638 5.1941 0.3864 13 6 9.6761 5.1438 0.3819 14 1 10.2491 6.0546 0.4746 15 6 10.3324 3.9132 0.2572 16 7 9.6387 2.8108 0.1445 17 14 12.1992 3.8468 0.2520 18 1 12.7180 4.4024 1.5277 19 1 12.6439 2.4373 0.1083 20 1 12.7199 4.6479 -0.8849 21 7 7.5585 4.0639 0.2704 22 8 4.0469 0.8903 -1.2280 23 6 4.4774 -0.4684 -1.1264 24 6 4.8445 -0.9925 -2.5162 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6763 1.9565 0.8897 31 1 1.6771 1.9561 -0.8903 32 1 3.7171 3.4788 -0.6867 33 1 3.7161 3.2987 1.0842 34 1 6.0300 2.0416 0.0640 35 1 4.4512 5.2708 0.3815 36 1 5.6985 7.4034 0.6081 37 1 8.1793 7.3446 0.6045 38 1 10.0934 1.9583 0.0585 39 1 3.6726 -1.0745 -0.7104 40 1 5.3493 -0.5256 -0.4746 41 1 5.6494 -0.3865 -2.9321 42 1 3.9726 -0.9354 -3.1679 43 1 5.1725 -2.0291 -2.4386 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329754401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:51 Heat of formation + Delta-G solvation = -46.257987 kcal Electronic energy + Delta-G solvation = -21622.154850 eV Core-core repulsion = 18472.937795 eV Total energy + Delta-G solvation = -3149.217055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.31986 -39.62403 -36.59130 -35.57343 -35.03012 -32.78488 -32.19213 -31.10486 -29.78146 -27.31631 -26.57530 -23.89012 -23.51901 -22.77985 -21.99977 -21.84479 -19.24767 -18.23275 -17.92164 -16.81313 -16.75813 -16.39010 -16.06986 -15.57470 -15.39433 -15.12241 -14.82436 -14.51015 -14.27751 -14.02748 -13.90596 -13.61227 -13.34835 -12.90284 -12.81332 -12.76973 -12.73528 -12.64060 -12.52709 -12.26235 -12.07091 -11.90039 -11.74664 -11.60377 -11.43556 -11.27129 -10.66344 -10.37296 -9.82905 -9.43590 -8.27825 -8.21674 -6.47477 1.07785 1.35413 1.41165 1.53406 1.59906 2.25529 2.61956 2.73339 2.93710 3.73870 3.99368 4.00671 4.06851 4.16107 4.24349 4.30914 4.37633 4.42888 4.48664 4.60216 4.66191 4.73201 4.75255 4.86716 4.90733 4.97941 5.00606 5.01208 5.03328 5.07473 5.13505 5.24556 5.28040 5.35981 5.38026 5.45279 5.72458 5.97182 6.07915 6.22929 6.33202 6.56952 6.83888 6.95060 7.22573 8.35571 8.52393 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.004214 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.425203 B = 6643.152729 C = 7858.954351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.127 4.127 4 C 0.087 3.913 5 H 0.069 0.931 6 C 0.138 3.862 7 N -0.729 5.729 8 C 0.393 3.607 9 C -0.369 4.369 10 C -0.029 4.029 11 C -0.345 4.345 12 C 0.259 3.741 13 C -0.473 4.473 14 H 0.087 0.913 15 C 0.025 3.975 16 N -0.752 5.752 17 Si 0.987 3.013 18 H -0.259 1.259 19 H -0.268 1.268 20 H -0.260 1.260 21 N -0.567 5.567 22 O -0.395 6.395 23 C 0.049 3.951 24 C -0.148 4.148 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.390 0.610 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.275 0.725 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 -9.250 -0.418 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.166 4.166 4 C 0.029 3.971 5 H 0.087 0.913 6 C 0.014 3.986 7 N -0.363 5.363 8 C 0.153 3.847 9 C -0.394 4.394 10 C -0.053 4.053 11 C -0.368 4.368 12 C 0.131 3.869 13 C -0.505 4.505 14 H 0.105 0.895 15 C -0.196 4.196 16 N -0.374 5.374 17 Si 0.807 3.193 18 H -0.183 1.183 19 H -0.193 1.193 20 H -0.185 1.185 21 N -0.290 5.290 22 O -0.315 6.315 23 C -0.027 4.027 24 C -0.205 4.205 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.224 0.776 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.138 -10.076 -0.688 16.571 hybrid contribution 0.640 0.515 0.188 0.843 sum -12.498 -9.561 -0.500 15.744 Atomic orbital electron populations 1.21741 0.94685 1.02115 1.02068 1.21573 0.96876 0.95736 1.01996 1.21971 0.92395 0.98658 1.03530 1.22361 0.94972 0.92733 0.87073 0.91260 1.21502 0.79319 0.96788 1.01026 1.44169 1.04972 1.05385 1.81822 1.19004 0.89814 0.86529 0.89392 1.20954 0.99005 0.92409 1.27078 1.21009 0.93475 0.97348 0.93501 1.21696 0.95175 0.97852 1.22097 1.18692 0.94102 0.86816 0.87253 1.19919 0.90721 0.94920 1.44915 0.89516 1.26978 1.05567 0.94552 0.92536 1.70260 1.38793 0.98995 1.29377 0.85211 0.75723 0.78402 0.79970 1.18311 1.19276 1.18459 1.68190 1.03988 1.30159 1.26624 1.87960 1.83416 1.27776 1.32389 1.22760 0.98456 0.82650 0.98868 1.21739 1.01861 1.01356 0.95571 0.92044 0.92225 0.92802 0.92035 0.91710 0.89463 0.91240 0.92975 0.90797 0.77635 0.86411 0.85203 0.87898 0.91420 0.91093 0.94383 0.93804 0.91591 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.12 -2.02 5.02 30.59 0.15 -1.87 16 3 C -0.13 -2.46 4.92 30.59 0.15 -2.31 16 4 C 0.09 2.21 2.35 30.60 0.07 2.28 16 5 H 0.07 1.70 7.70 -2.38 -0.02 1.68 16 6 C 0.14 4.42 4.58 86.38 0.40 4.81 16 7 N -0.73 -31.03 5.61 -344.98 -1.94 -32.97 16 8 C 0.39 20.24 7.65 133.42 1.02 21.26 16 9 C -0.37 -17.34 9.34 22.73 0.21 -17.12 16 10 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 11 C -0.35 -18.26 9.83 22.87 0.22 -18.04 16 12 C 0.26 15.29 6.55 40.18 0.26 15.55 16 13 C -0.47 -27.04 9.14 23.46 0.21 -26.82 16 14 H 0.09 4.64 7.85 -2.91 -0.02 4.61 16 15 C 0.03 1.35 5.50 85.29 0.47 1.81 16 16 N -0.75 -41.95 11.46 21.84 0.25 -41.70 16 17 Si 0.99 39.57 29.56 68.60 2.03 41.59 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 19 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 21 N -0.57 -33.33 7.89 -186.59 -1.47 -34.80 16 22 O -0.40 -11.44 9.50 -148.98 -1.42 -12.86 16 23 C 0.05 1.15 5.99 71.98 0.43 1.58 16 24 C -0.15 -3.19 10.28 71.98 0.74 -2.45 16 25 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.08 6.27 -2.39 -0.01 1.06 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.74 7.91 -2.39 -0.02 1.72 16 33 H 0.07 2.18 7.93 -2.39 -0.02 2.16 16 34 H 0.39 17.18 8.47 -92.71 -0.79 16.39 16 35 H 0.12 4.75 6.68 -2.91 -0.02 4.73 16 36 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 37 H 0.10 5.06 8.06 -2.91 -0.02 5.04 16 38 H 0.28 13.90 8.29 -92.70 -0.77 13.13 16 39 H 0.07 1.33 5.93 -2.39 -0.01 1.32 16 40 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.00 351.09 2.94 -65.06 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: 0.20 Total: 39.44 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 5.29 Total: -23.76 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -3.16 Total: -109.47 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.42 Total: -12.86 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Total: -68.00 2.94 -65.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329754401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.799 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds