Wall clock time and date at job start Tue Mar 31 2020 00:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47080 * 2 1 4 4 C 1.53000 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47288 * 55.00380 * 4 3 2 6 6 C 1.53002 * 109.46979 * 175.00240 * 4 3 2 7 7 N 1.46505 * 109.47130 * 182.49812 * 6 4 3 8 8 C 1.38822 * 119.99889 * 174.21758 * 7 6 4 9 9 C 1.39787 * 119.58643 * 0.27838 * 8 7 6 10 10 C 1.38597 * 119.49307 * 179.97438 * 9 8 7 11 11 C 1.38393 * 118.67855 * 359.97438 * 10 9 8 12 12 C 1.40550 * 119.15080 * 0.02562 * 11 10 9 13 13 C 1.41312 * 119.78541 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00258 * 359.97438 * 13 12 11 15 15 C 1.40030 * 120.00078 * 179.97438 * 13 12 11 16 16 N 1.30745 * 119.99916 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00068 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47502 * 89.99800 * 17 15 13 19 19 H 1.48501 * 109.47125 * 209.99991 * 17 15 13 20 20 H 1.48503 * 109.46884 * 329.99550 * 17 15 13 21 21 N 1.31957 * 119.57953 * 180.02562 * 8 7 6 22 22 O 1.42900 * 109.47327 * 295.00215 * 4 3 2 23 23 C 1.42903 * 114.00080 * 121.01697 * 22 4 3 24 24 C 1.53000 * 109.47163 * 174.56739 * 23 22 4 25 25 H 1.08998 * 109.47159 * 59.99572 * 1 2 3 26 26 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47191 * 299.99984 * 1 2 3 28 28 H 1.09002 * 109.46867 * 240.00707 * 2 1 3 29 29 H 1.08998 * 109.47159 * 120.00428 * 2 1 3 30 30 H 1.09005 * 109.47143 * 60.00385 * 3 2 1 31 31 H 1.08998 * 109.47474 * 300.00235 * 3 2 1 32 32 H 1.09004 * 109.47149 * 62.50315 * 6 4 3 33 33 H 1.08993 * 109.47456 * 302.49590 * 6 4 3 34 34 H 0.97004 * 119.99553 * 354.49305 * 7 6 4 35 35 H 1.08003 * 120.25437 * 359.95568 * 9 8 7 36 36 H 1.08001 * 120.66237 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.42279 * 179.97438 * 11 10 9 38 38 H 0.96997 * 119.99802 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.46540 * 294.56699 * 23 22 4 40 40 H 1.08997 * 109.46956 * 54.56225 * 23 22 4 41 41 H 1.08998 * 109.47057 * 179.97438 * 24 23 22 42 42 H 1.08999 * 109.46713 * 300.00113 * 24 23 22 43 43 H 1.09002 * 109.46808 * 59.99502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0800 2.8795 -0.1250 7 7 5.5438 2.8747 -0.1844 8 6 6.2328 4.0566 -0.4203 9 6 5.5214 5.2473 -0.5941 10 6 6.2112 6.4262 -0.8290 11 6 7.5935 6.3873 -0.8840 12 6 8.2516 5.1588 -0.7012 13 6 9.6626 5.1037 -0.7541 14 1 10.2318 6.0036 -0.9349 15 6 10.3229 3.8824 -0.5722 16 7 9.6339 2.7931 -0.3528 17 14 12.1881 3.8094 -0.6428 18 1 12.7440 4.0287 0.7166 19 1 12.6128 2.4769 -1.1422 20 1 12.6904 4.8645 -1.5591 21 7 7.5513 4.0427 -0.4727 22 8 4.0459 0.8732 1.2219 23 6 4.8739 -0.2776 1.0430 24 6 5.4328 -0.7193 2.3971 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.7534 3.4579 0.7393 33 1 3.6810 3.3285 -1.0345 34 1 6.0314 2.0450 -0.0629 35 1 4.4424 5.2485 -0.5461 36 1 5.6806 7.3570 -0.9656 37 1 8.1592 7.2891 -1.0658 38 1 10.0913 1.9471 -0.2264 39 1 4.2837 -1.0864 0.6122 40 1 5.6975 -0.0319 0.3726 41 1 6.0640 -1.5974 2.2606 42 1 6.0229 0.0895 2.8278 43 1 4.6091 -0.9649 3.0674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329754407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:56 Heat of formation + Delta-G solvation = -30.375187 kcal Electronic energy + Delta-G solvation = -21667.400841 eV Core-core repulsion = 18518.872516 eV Total energy + Delta-G solvation = -3148.528325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.92273 -37.96737 -35.07694 -34.60340 -33.20044 -31.53237 -30.36870 -29.66975 -28.36836 -25.53917 -25.19122 -22.79798 -22.01962 -21.41918 -20.83115 -20.20824 -17.31554 -16.97723 -16.47635 -15.46564 -15.16098 -14.85812 -14.63830 -14.41142 -13.83041 -13.71586 -13.41698 -13.25478 -13.05680 -12.70193 -12.63466 -12.08463 -11.98849 -11.85442 -11.80617 -11.51848 -11.18369 -11.10382 -10.96560 -10.94856 -10.81482 -10.62714 -10.56241 -10.37988 -9.88077 -9.44878 -9.33364 -8.83347 -7.86187 -7.46184 -6.44780 -6.28726 -4.43270 2.91127 3.12839 3.16309 3.28559 3.34044 3.74838 4.01070 4.15152 4.77913 4.88534 4.90082 4.95785 5.10892 5.13233 5.31132 5.37422 5.45518 5.52038 5.55204 5.70331 5.73086 5.80202 5.92496 5.98757 6.00871 6.10649 6.11644 6.17464 6.20445 6.22361 6.28036 6.62796 6.90831 6.94112 6.99339 7.29119 7.36237 7.64846 7.86387 7.96905 8.21149 8.41809 8.73786 8.84933 9.17199 10.29245 10.44908 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.004309 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.719412 B = 6496.781936 C = 7724.240681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.081 3.919 5 H 0.066 0.934 6 C 0.132 3.868 7 N -0.735 5.735 8 C 0.412 3.588 9 C -0.367 4.367 10 C -0.032 4.032 11 C -0.318 4.318 12 C 0.293 3.707 13 C -0.435 4.435 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.716 5.716 17 Si 0.904 3.096 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.262 1.262 21 N -0.532 5.532 22 O -0.375 6.375 23 C 0.057 3.943 24 C -0.150 4.150 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.268 0.732 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.702 -8.221 1.171 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.163 4.163 4 C 0.022 3.978 5 H 0.084 0.916 6 C 0.006 3.994 7 N -0.372 5.372 8 C 0.172 3.828 9 C -0.393 4.393 10 C -0.056 4.056 11 C -0.341 4.341 12 C 0.166 3.834 13 C -0.467 4.467 14 H 0.101 0.899 15 C -0.153 4.153 16 N -0.338 5.338 17 Si 0.729 3.271 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.186 1.186 21 N -0.254 5.254 22 O -0.294 6.294 23 C -0.019 4.019 24 C -0.207 4.207 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.460 -9.056 1.501 14.683 hybrid contribution 0.568 0.368 -0.354 0.764 sum -10.892 -8.688 1.147 13.979 Atomic orbital electron populations 1.21760 0.95893 1.01379 1.01790 1.21488 0.95739 0.96771 1.02055 1.21848 0.93925 0.97510 1.03028 1.22386 0.93829 0.94148 0.87409 0.91591 1.21417 0.82055 0.95073 1.00830 1.44026 1.03494 1.08320 1.81340 1.18529 0.90080 0.84678 0.89507 1.20603 0.97624 0.93553 1.27518 1.20590 0.94110 0.95686 0.95236 1.21527 0.93888 0.98654 1.20011 1.18198 0.93110 0.85681 0.86430 1.19568 0.90358 0.94685 1.42136 0.89947 1.26044 1.00143 0.95522 0.93612 1.70164 1.36329 0.98908 1.28423 0.86389 0.82922 0.78457 0.79351 1.19528 1.20296 1.18625 1.68217 1.02526 1.29676 1.24970 1.87947 1.67498 1.44405 1.29548 1.22556 0.93400 0.87580 0.98389 1.21723 1.01001 1.01570 0.96439 0.92824 0.92979 0.92693 0.92418 0.91525 0.90807 0.90721 0.92601 0.91967 0.77223 0.89237 0.88982 0.88757 0.92063 0.93883 0.93022 0.91363 0.91463 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.17 5.83 -26.73 -0.16 -1.33 16 3 C -0.12 -1.35 4.92 -26.73 -0.13 -1.48 16 4 C 0.08 1.08 2.32 -26.73 -0.06 1.02 16 5 H 0.07 0.86 7.60 -51.93 -0.39 0.46 16 6 C 0.13 2.18 4.62 -4.04 -0.02 2.16 16 7 N -0.73 -15.43 5.65 -60.39 -0.34 -15.77 16 8 C 0.41 10.42 7.65 -155.33 -1.19 9.23 16 9 C -0.37 -8.75 9.32 -38.87 -0.36 -9.11 16 10 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 11 C -0.32 -8.26 9.83 -38.65 -0.38 -8.64 16 12 C 0.29 8.36 6.55 -85.00 -0.56 7.80 16 13 C -0.44 -12.02 9.14 -37.74 -0.34 -12.37 16 14 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 15 C 0.07 1.86 5.50 -17.34 -0.10 1.77 16 16 N -0.72 -19.30 11.46 55.55 0.64 -18.66 16 17 Si 0.90 18.98 29.56 -169.99 -5.02 13.96 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 21 N -0.53 -15.10 7.89 -10.33 -0.08 -15.18 16 22 O -0.37 -5.47 9.31 -35.23 -0.33 -5.80 16 23 C 0.06 0.74 6.22 37.16 0.23 0.97 16 24 C -0.15 -1.77 10.28 37.16 0.38 -1.39 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 33 H 0.06 0.98 7.62 -51.93 -0.40 0.59 16 34 H 0.39 8.31 7.43 -40.82 -0.30 8.01 16 35 H 0.09 1.90 6.67 -52.48 -0.35 1.55 16 36 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.72 7.23 -51.93 -0.38 0.34 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -30.43 353.57 -9.79 -40.22 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.27 Total: 9.30 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.71 Total: -13.40 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.21 Total: -49.61 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.33 Total: -5.80 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.43 -9.79 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329754407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.844 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds