Wall clock time and date at job start Tue Mar 31 2020 00:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47080 * 2 1 4 4 C 1.53000 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47288 * 55.00380 * 4 3 2 6 6 C 1.53002 * 109.46979 * 175.00240 * 4 3 2 7 7 N 1.46505 * 109.47130 * 182.49812 * 6 4 3 8 8 C 1.38822 * 119.99889 * 174.21758 * 7 6 4 9 9 C 1.39787 * 119.58643 * 0.27838 * 8 7 6 10 10 C 1.38597 * 119.49307 * 179.97438 * 9 8 7 11 11 C 1.38393 * 118.67855 * 359.97438 * 10 9 8 12 12 C 1.40550 * 119.15080 * 0.02562 * 11 10 9 13 13 C 1.41312 * 119.78541 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00258 * 359.97438 * 13 12 11 15 15 C 1.40030 * 120.00078 * 179.97438 * 13 12 11 16 16 N 1.30745 * 119.99916 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00068 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47502 * 89.99800 * 17 15 13 19 19 H 1.48501 * 109.47125 * 209.99991 * 17 15 13 20 20 H 1.48503 * 109.46884 * 329.99550 * 17 15 13 21 21 N 1.31957 * 119.57953 * 180.02562 * 8 7 6 22 22 O 1.42900 * 109.47327 * 295.00215 * 4 3 2 23 23 C 1.42903 * 114.00080 * 121.01697 * 22 4 3 24 24 C 1.53000 * 109.47163 * 174.56739 * 23 22 4 25 25 H 1.08998 * 109.47159 * 59.99572 * 1 2 3 26 26 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47191 * 299.99984 * 1 2 3 28 28 H 1.09002 * 109.46867 * 240.00707 * 2 1 3 29 29 H 1.08998 * 109.47159 * 120.00428 * 2 1 3 30 30 H 1.09005 * 109.47143 * 60.00385 * 3 2 1 31 31 H 1.08998 * 109.47474 * 300.00235 * 3 2 1 32 32 H 1.09004 * 109.47149 * 62.50315 * 6 4 3 33 33 H 1.08993 * 109.47456 * 302.49590 * 6 4 3 34 34 H 0.97004 * 119.99553 * 354.49305 * 7 6 4 35 35 H 1.08003 * 120.25437 * 359.95568 * 9 8 7 36 36 H 1.08001 * 120.66237 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.42279 * 179.97438 * 11 10 9 38 38 H 0.96997 * 119.99802 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.46540 * 294.56699 * 23 22 4 40 40 H 1.08997 * 109.46956 * 54.56225 * 23 22 4 41 41 H 1.08998 * 109.47057 * 179.97438 * 24 23 22 42 42 H 1.08999 * 109.46713 * 300.00113 * 24 23 22 43 43 H 1.09002 * 109.46808 * 59.99502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0800 2.8795 -0.1250 7 7 5.5438 2.8747 -0.1844 8 6 6.2328 4.0566 -0.4203 9 6 5.5214 5.2473 -0.5941 10 6 6.2112 6.4262 -0.8290 11 6 7.5935 6.3873 -0.8840 12 6 8.2516 5.1588 -0.7012 13 6 9.6626 5.1037 -0.7541 14 1 10.2318 6.0036 -0.9349 15 6 10.3229 3.8824 -0.5722 16 7 9.6339 2.7931 -0.3528 17 14 12.1881 3.8094 -0.6428 18 1 12.7440 4.0287 0.7166 19 1 12.6128 2.4769 -1.1422 20 1 12.6904 4.8645 -1.5591 21 7 7.5513 4.0427 -0.4727 22 8 4.0459 0.8732 1.2219 23 6 4.8739 -0.2776 1.0430 24 6 5.4328 -0.7193 2.3971 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.7534 3.4579 0.7393 33 1 3.6810 3.3285 -1.0345 34 1 6.0314 2.0450 -0.0629 35 1 4.4424 5.2485 -0.5461 36 1 5.6806 7.3570 -0.9656 37 1 8.1592 7.2891 -1.0658 38 1 10.0913 1.9471 -0.2264 39 1 4.2837 -1.0864 0.6122 40 1 5.6975 -0.0319 0.3726 41 1 6.0640 -1.5974 2.2606 42 1 6.0229 0.0895 2.8278 43 1 4.6091 -0.9649 3.0674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329754407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:55 Heat of formation + Delta-G solvation = -47.304167 kcal Electronic energy + Delta-G solvation = -21668.134937 eV Core-core repulsion = 18518.872516 eV Total energy + Delta-G solvation = -3149.262421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33652 -39.58061 -36.54987 -35.69538 -35.02295 -32.72632 -32.19181 -31.14232 -29.78270 -27.32443 -26.55808 -23.83388 -23.57875 -22.83097 -22.01126 -21.81616 -19.25684 -18.19923 -17.98543 -16.82460 -16.65695 -16.34782 -16.08366 -15.62753 -15.43797 -15.13413 -14.82280 -14.57529 -14.26231 -14.08175 -13.90402 -13.63112 -13.31973 -12.90286 -12.83352 -12.79414 -12.73190 -12.60816 -12.47905 -12.22147 -12.04441 -11.88409 -11.72459 -11.69920 -11.46252 -11.28645 -10.66938 -10.42586 -9.83774 -9.44656 -8.29726 -8.22628 -6.47982 1.06246 1.34453 1.41135 1.54337 1.58855 2.25126 2.60523 2.71094 2.92884 3.73349 3.98578 4.02238 4.06141 4.17957 4.23701 4.31805 4.36487 4.42756 4.47163 4.56715 4.68427 4.73436 4.76210 4.86751 4.92871 4.97413 4.99901 5.00577 5.01901 5.08382 5.13003 5.24290 5.29173 5.36691 5.37335 5.47952 5.71742 5.96464 6.07021 6.22485 6.30279 6.55596 6.82856 6.93612 7.21224 8.34388 8.51577 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.004309 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.719412 B = 6496.781936 C = 7724.240681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.119 4.119 4 C 0.086 3.914 5 H 0.070 0.930 6 C 0.129 3.871 7 N -0.731 5.731 8 C 0.393 3.607 9 C -0.368 4.368 10 C -0.029 4.029 11 C -0.345 4.345 12 C 0.258 3.742 13 C -0.471 4.471 14 H 0.086 0.914 15 C 0.025 3.975 16 N -0.752 5.752 17 Si 0.987 3.013 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.256 1.256 21 N -0.566 5.566 22 O -0.392 6.392 23 C 0.054 3.946 24 C -0.147 4.147 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.389 0.611 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.275 0.725 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 -8.838 0.907 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.157 4.157 4 C 0.028 3.972 5 H 0.088 0.912 6 C 0.004 3.996 7 N -0.366 5.366 8 C 0.152 3.848 9 C -0.394 4.394 10 C -0.053 4.053 11 C -0.368 4.368 12 C 0.131 3.869 13 C -0.503 4.503 14 H 0.105 0.895 15 C -0.196 4.196 16 N -0.374 5.374 17 Si 0.807 3.193 18 H -0.189 1.189 19 H -0.192 1.192 20 H -0.180 1.180 21 N -0.289 5.289 22 O -0.312 6.312 23 C -0.022 4.022 24 C -0.204 4.204 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.223 0.777 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.456 -9.679 1.241 15.823 hybrid contribution 0.728 0.554 -0.255 0.950 sum -11.727 -9.125 0.987 14.892 Atomic orbital electron populations 1.21740 0.94702 1.02076 1.02089 1.21456 0.96728 0.95665 1.01905 1.21825 0.91586 0.98680 1.03563 1.22395 0.95471 0.92063 0.87244 0.91200 1.21687 0.79344 0.97529 1.01016 1.44227 1.05201 1.06926 1.80256 1.19004 0.89839 0.86606 0.89342 1.20950 0.99066 0.93056 1.26342 1.21009 0.93502 0.97288 0.93527 1.21700 0.95202 0.98309 1.21546 1.18694 0.94108 0.86828 0.87240 1.19936 0.90784 0.95856 1.43763 0.89543 1.26973 1.05537 0.94541 0.92577 1.70262 1.38703 0.99608 1.28809 0.85154 0.75779 0.78845 0.79530 1.18902 1.19214 1.17997 1.68191 1.04105 1.30251 1.26384 1.87928 1.67737 1.45200 1.30297 1.22665 0.93092 0.87738 0.98697 1.21728 1.01292 1.01384 0.96042 0.92195 0.92136 0.92739 0.91931 0.92329 0.91116 0.89314 0.93139 0.90831 0.77691 0.86419 0.85202 0.87894 0.91412 0.91509 0.94738 0.89487 0.93898 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.12 -2.03 5.83 30.59 0.18 -1.85 16 3 C -0.12 -2.31 4.92 30.59 0.15 -2.16 16 4 C 0.09 2.21 2.32 30.60 0.07 2.28 16 5 H 0.07 1.74 7.60 -2.39 -0.02 1.72 16 6 C 0.13 4.13 4.62 86.38 0.40 4.53 16 7 N -0.73 -30.93 5.65 -344.98 -1.95 -32.88 16 8 C 0.39 20.10 7.65 133.42 1.02 21.12 16 9 C -0.37 -17.25 9.32 22.73 0.21 -17.04 16 10 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 11 C -0.34 -18.14 9.83 22.87 0.22 -17.92 16 12 C 0.26 15.19 6.55 40.17 0.26 15.46 16 13 C -0.47 -26.81 9.14 23.46 0.21 -26.59 16 14 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 15 C 0.03 1.34 5.50 85.29 0.47 1.81 16 16 N -0.75 -41.55 11.46 21.84 0.25 -41.30 16 17 Si 0.99 39.33 29.56 68.60 2.03 41.36 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 21 N -0.57 -33.10 7.89 -186.59 -1.47 -34.57 16 22 O -0.39 -11.19 9.31 -148.98 -1.39 -12.58 16 23 C 0.05 1.36 6.22 71.98 0.45 1.81 16 24 C -0.15 -3.41 10.28 71.98 0.74 -2.67 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.09 7.82 -2.39 -0.02 1.07 16 30 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.68 8.12 -2.38 -0.02 1.66 16 33 H 0.07 2.20 7.62 -2.39 -0.02 2.18 16 34 H 0.39 16.90 7.43 -92.71 -0.69 16.21 16 35 H 0.12 4.74 6.67 -2.91 -0.02 4.72 16 36 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 37 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 38 H 0.28 13.72 8.29 -92.71 -0.77 12.95 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.03 0.97 7.23 -2.39 -0.02 0.95 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -67.18 353.57 3.09 -64.09 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: 0.29 Total: 39.60 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 5.33 Total: -23.72 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -3.17 Total: -108.75 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -1.39 Total: -12.58 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -67.18 3.09 -64.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329754407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.783 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds