Wall clock time and date at job start Tue Mar 31 2020 00:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.32991 * 119.99517 * 2 1 4 4 C 1.47100 * 119.99916 * 172.95524 * 3 2 1 5 5 O 1.21622 * 119.99565 * 354.04100 * 4 3 2 6 6 N 1.34778 * 120.00413 * 174.03928 * 4 3 2 7 7 C 1.46501 * 119.99946 * 180.02562 * 6 4 3 8 8 H 1.08997 * 112.85119 * 25.33366 * 7 6 4 9 9 C 1.53785 * 113.61013 * 156.52845 * 7 6 4 10 10 C 1.53775 * 87.08051 * 89.19922 * 9 7 6 11 11 H 1.08994 * 113.61833 * 270.88054 * 10 9 7 12 12 C 1.53004 * 113.61389 * 140.05996 * 10 9 7 13 13 N 1.46501 * 109.46913 * 174.99739 * 12 10 9 14 14 C 1.36945 * 119.99753 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99814 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99929 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00083 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00058 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47005 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47103 * 120.00282 * 18 16 14 21 21 H 1.48500 * 109.47751 * 240.00323 * 18 16 14 22 22 C 1.53781 * 87.08465 * 25.43234 * 10 9 7 23 23 C 1.50697 * 119.99977 * 180.02562 * 2 1 3 24 24 C 1.52995 * 117.50038 * 1.64811 * 23 2 1 25 25 C 1.52995 * 60.00058 * 252.51065 * 24 23 2 26 26 H 1.09003 * 109.46787 * 90.00229 * 1 2 3 27 27 H 1.08994 * 109.46975 * 209.99661 * 1 2 3 28 28 H 1.08995 * 109.46978 * 329.99832 * 1 2 3 29 29 H 1.07995 * 120.00609 * 352.96244 * 3 2 1 30 30 H 0.97000 * 119.99861 * 0.02562 * 6 4 3 31 31 H 1.09002 * 113.61139 * 203.74909 * 9 7 6 32 32 H 1.09000 * 113.61377 * 334.56673 * 9 7 6 33 33 H 1.08997 * 109.47429 * 295.00351 * 12 10 9 34 34 H 1.09000 * 109.46973 * 55.00372 * 12 10 9 35 35 H 0.97000 * 120.00218 * 0.02562 * 13 12 10 36 36 H 0.97000 * 120.00012 * 179.97438 * 17 16 14 37 37 H 1.08998 * 113.61496 * 220.02085 * 22 10 9 38 38 H 1.09001 * 113.61718 * 89.11242 * 22 10 9 39 39 H 1.09002 * 115.54875 * 147.35918 * 23 2 1 40 40 H 1.09003 * 117.50126 * 359.97438 * 24 23 2 41 41 H 1.09004 * 117.50144 * 145.01864 * 24 23 2 42 42 H 1.09002 * 117.49934 * 252.50878 * 25 24 23 43 43 H 1.08998 * 117.51775 * 107.48044 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6346 1.1567 0.1562 5 8 4.2243 0.1198 0.3936 6 7 4.3214 2.3102 0.0364 7 6 5.7781 2.3149 0.1914 8 1 6.2312 1.3501 -0.0366 9 6 6.4679 3.4995 -0.5056 10 6 6.2747 4.2812 0.8045 11 1 5.3265 4.8160 0.8580 12 6 7.4725 5.1566 1.1782 13 7 7.1473 5.9469 2.3682 14 6 8.0731 6.8103 2.8907 15 1 9.0427 6.9088 2.4254 16 6 7.7652 7.5587 4.0185 17 7 6.5837 7.4382 4.5859 18 14 9.0282 8.7357 4.7317 19 1 10.2678 8.6858 3.9155 20 1 8.4817 10.1165 4.7171 21 1 9.3390 8.3412 6.1292 22 6 6.2560 2.9209 1.5216 23 6 2.2606 -1.3051 -0.0006 24 6 1.4390 -2.5951 -0.0402 25 6 2.1541 -2.1828 1.2480 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6381 2.0835 -0.1146 30 1 3.8511 3.1372 -0.1526 31 1 7.5131 3.3125 -0.7524 32 1 5.9007 3.9032 -1.3442 33 1 8.3345 4.5231 1.3872 34 1 7.7058 5.8260 0.3502 35 1 6.2764 5.8587 2.7859 36 1 6.3687 7.9609 5.3742 37 1 5.5169 2.8585 2.3203 38 1 7.2432 2.5757 1.8290 39 1 3.2128 -1.2979 -0.5310 40 1 0.3535 -2.5000 -0.0654 41 1 1.8506 -3.4371 -0.5970 42 1 3.0361 -2.7535 1.5388 43 1 1.5393 -1.8162 2.0700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330569259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:08 Heat of formation + Delta-G solvation = 32.874006 kcal Electronic energy + Delta-G solvation = -20945.437875 eV Core-core repulsion = 17799.652241 eV Total energy + Delta-G solvation = -3145.785634 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.25732 -38.83741 -37.46396 -34.48307 -33.62592 -32.95637 -30.82284 -28.43107 -26.70244 -25.45574 -24.01653 -23.10763 -22.49417 -21.51544 -21.08065 -19.12725 -18.58986 -17.29058 -16.96738 -16.16941 -15.57118 -15.02838 -14.73602 -14.59889 -14.12051 -14.05058 -13.64850 -13.38779 -13.25538 -13.12896 -12.74463 -12.55226 -12.30271 -12.08059 -11.77323 -11.59159 -11.48832 -11.02865 -10.95567 -10.82746 -10.57230 -10.40573 -10.28881 -10.04489 -9.79599 -9.61604 -9.52596 -9.14800 -8.86324 -8.76147 -6.87563 -5.73814 -3.01852 1.16341 3.21008 3.24073 3.44798 3.50262 3.52648 3.79722 4.33863 4.55844 4.60367 4.73129 4.79926 4.86540 4.88761 4.93190 5.12942 5.16702 5.20087 5.22073 5.30581 5.40945 5.56424 5.60652 5.71072 5.78885 5.90729 5.93745 5.97848 6.02119 6.08773 6.14113 6.16636 6.29531 6.36176 6.39308 6.48035 6.71325 6.82377 6.98090 7.59138 7.72934 8.30049 8.45535 9.56446 10.16028 10.50451 11.49306 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031374 B = 0.002732 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.250322 B =10247.140212 C =10549.483063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.005 4.005 3 C -0.226 4.226 4 C 0.547 3.453 5 O -0.539 6.539 6 N -0.707 5.707 7 C 0.117 3.883 8 H 0.097 0.903 9 C -0.138 4.138 10 C -0.113 4.113 11 H 0.087 0.913 12 C 0.162 3.838 13 N -0.732 5.732 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.016 4.016 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.138 4.138 23 C -0.118 4.118 24 C -0.191 4.191 25 C -0.155 4.155 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.401 0.599 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.020 0.980 34 H 0.018 0.982 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 -16.929 -12.737 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.007 4.007 3 C -0.247 4.247 4 C 0.337 3.663 5 O -0.419 6.419 6 N -0.357 5.357 7 C 0.012 3.988 8 H 0.115 0.885 9 C -0.177 4.177 10 C -0.132 4.132 11 H 0.105 0.895 12 C 0.035 3.965 13 N -0.376 5.376 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.212 4.212 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.177 4.177 23 C -0.136 4.136 24 C -0.228 4.228 25 C -0.192 4.192 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.235 0.765 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.882 -17.565 -12.548 24.640 hybrid contribution 0.159 1.317 0.602 1.457 sum -11.723 -16.248 -11.946 23.327 Atomic orbital electron populations 1.21020 0.91157 1.03386 1.02974 1.21801 0.95182 0.93370 0.90335 1.22371 0.93479 0.98731 1.10080 1.18519 0.87743 0.83379 0.76671 1.90738 1.71036 1.31470 1.48627 1.45609 1.07381 1.10294 1.72393 1.21895 0.79865 0.99411 0.97635 0.88494 1.23306 1.01251 0.95777 0.97342 1.22750 1.00404 0.95203 0.94820 0.89472 1.20640 0.93640 0.92159 0.90088 1.42366 1.16973 1.48084 1.30191 1.19298 0.95318 1.14842 1.07368 0.91189 1.24744 0.97061 1.00772 0.98639 1.69674 1.20594 1.44715 1.23337 0.86119 0.80531 0.80752 0.78821 1.20577 1.21909 1.21892 1.23403 1.01976 0.95947 0.96388 1.21470 1.00534 0.87836 1.03736 1.23137 0.99013 0.98637 1.02004 1.22800 1.02661 1.02446 0.91299 0.90304 0.90789 0.90838 0.85401 0.76486 0.88809 0.91324 0.96231 0.96432 0.78340 0.93627 0.91387 0.89250 0.84903 0.88694 0.88704 0.88482 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.49 36.01 0.34 -0.50 16 2 C -0.01 -0.05 5.80 -101.16 -0.59 -0.64 16 3 C -0.23 -2.32 9.62 -37.81 -0.36 -2.68 16 4 C 0.55 7.15 7.67 -12.66 -0.10 7.05 16 5 O -0.54 -8.57 12.93 5.26 0.07 -8.51 16 6 N -0.71 -8.48 5.26 -54.19 -0.29 -8.76 16 7 C 0.12 1.54 4.30 -67.11 -0.29 1.26 16 8 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 9 C -0.14 -1.72 7.38 -25.92 -0.19 -1.91 16 10 C -0.11 -1.79 3.64 -89.81 -0.33 -2.12 16 11 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 12 C 0.16 3.29 6.10 -4.04 -0.02 3.26 16 13 N -0.73 -18.91 5.60 -59.91 -0.34 -19.24 16 14 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 17 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 18 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 C -0.14 -2.15 7.44 -25.92 -0.19 -2.34 16 23 C -0.12 -1.24 4.35 -91.78 -0.40 -1.64 16 24 C -0.19 -1.55 9.79 -26.74 -0.26 -1.81 16 25 C -0.16 -1.52 10.23 -26.74 -0.27 -1.79 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.43 6.37 -51.93 -0.33 0.10 16 28 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.40 3.99 8.69 -40.82 -0.35 3.64 16 31 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.38 10.40 7.67 -40.82 -0.31 10.08 16 36 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.41 7.90 -51.93 -0.41 1.00 16 39 H 0.13 1.69 6.24 -51.93 -0.32 1.37 16 40 H 0.09 0.63 6.31 -51.93 -0.33 0.30 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -32.92 353.06 -9.49 -42.41 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.05 Total: 10.41 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.91 Total: -11.36 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.10 Total: -55.99 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.92 -9.49 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330569259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.281 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds