Wall clock time and date at job start Tue Mar 31 2020 00:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.32991 * 119.99517 * 2 1 4 4 C 1.47100 * 119.99916 * 172.95524 * 3 2 1 5 5 O 1.21622 * 119.99565 * 354.04100 * 4 3 2 6 6 N 1.34778 * 120.00413 * 174.03928 * 4 3 2 7 7 C 1.46501 * 119.99946 * 180.02562 * 6 4 3 8 8 H 1.08997 * 112.85119 * 25.33366 * 7 6 4 9 9 C 1.53785 * 113.61013 * 156.52845 * 7 6 4 10 10 C 1.53775 * 87.08051 * 89.19922 * 9 7 6 11 11 H 1.08994 * 113.61833 * 270.88054 * 10 9 7 12 12 C 1.53004 * 113.61389 * 140.05996 * 10 9 7 13 13 N 1.46501 * 109.46913 * 174.99739 * 12 10 9 14 14 C 1.36945 * 119.99753 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99814 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99929 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00083 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00058 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47005 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47103 * 120.00282 * 18 16 14 21 21 H 1.48500 * 109.47751 * 240.00323 * 18 16 14 22 22 C 1.53781 * 87.08465 * 25.43234 * 10 9 7 23 23 C 1.50697 * 119.99977 * 180.02562 * 2 1 3 24 24 C 1.52995 * 117.50038 * 1.64811 * 23 2 1 25 25 C 1.52995 * 60.00058 * 252.51065 * 24 23 2 26 26 H 1.09003 * 109.46787 * 90.00229 * 1 2 3 27 27 H 1.08994 * 109.46975 * 209.99661 * 1 2 3 28 28 H 1.08995 * 109.46978 * 329.99832 * 1 2 3 29 29 H 1.07995 * 120.00609 * 352.96244 * 3 2 1 30 30 H 0.97000 * 119.99861 * 0.02562 * 6 4 3 31 31 H 1.09002 * 113.61139 * 203.74909 * 9 7 6 32 32 H 1.09000 * 113.61377 * 334.56673 * 9 7 6 33 33 H 1.08997 * 109.47429 * 295.00351 * 12 10 9 34 34 H 1.09000 * 109.46973 * 55.00372 * 12 10 9 35 35 H 0.97000 * 120.00218 * 0.02562 * 13 12 10 36 36 H 0.97000 * 120.00012 * 179.97438 * 17 16 14 37 37 H 1.08998 * 113.61496 * 220.02085 * 22 10 9 38 38 H 1.09001 * 113.61718 * 89.11242 * 22 10 9 39 39 H 1.09002 * 115.54875 * 147.35918 * 23 2 1 40 40 H 1.09003 * 117.50126 * 359.97438 * 24 23 2 41 41 H 1.09004 * 117.50144 * 145.01864 * 24 23 2 42 42 H 1.09002 * 117.49934 * 252.50878 * 25 24 23 43 43 H 1.08998 * 117.51775 * 107.48044 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6346 1.1567 0.1562 5 8 4.2243 0.1198 0.3936 6 7 4.3214 2.3102 0.0364 7 6 5.7781 2.3149 0.1914 8 1 6.2312 1.3501 -0.0366 9 6 6.4679 3.4995 -0.5056 10 6 6.2747 4.2812 0.8045 11 1 5.3265 4.8160 0.8580 12 6 7.4725 5.1566 1.1782 13 7 7.1473 5.9469 2.3682 14 6 8.0731 6.8103 2.8907 15 1 9.0427 6.9088 2.4254 16 6 7.7652 7.5587 4.0185 17 7 6.5837 7.4382 4.5859 18 14 9.0282 8.7357 4.7317 19 1 10.2678 8.6858 3.9155 20 1 8.4817 10.1165 4.7171 21 1 9.3390 8.3412 6.1292 22 6 6.2560 2.9209 1.5216 23 6 2.2606 -1.3051 -0.0006 24 6 1.4390 -2.5951 -0.0402 25 6 2.1541 -2.1828 1.2480 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6381 2.0835 -0.1146 30 1 3.8511 3.1372 -0.1526 31 1 7.5131 3.3125 -0.7524 32 1 5.9007 3.9032 -1.3442 33 1 8.3345 4.5231 1.3872 34 1 7.7058 5.8260 0.3502 35 1 6.2764 5.8587 2.7859 36 1 6.3687 7.9609 5.3742 37 1 5.5169 2.8585 2.3203 38 1 7.2432 2.5757 1.8290 39 1 3.2128 -1.2979 -0.5310 40 1 0.3535 -2.5000 -0.0654 41 1 1.8506 -3.4371 -0.5970 42 1 3.0361 -2.7535 1.5388 43 1 1.5393 -1.8162 2.0700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330569259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:07 Heat of formation + Delta-G solvation = 12.239157 kcal Electronic energy + Delta-G solvation = -20946.332669 eV Core-core repulsion = 17799.652241 eV Total energy + Delta-G solvation = -3146.680428 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.30641 -39.87196 -38.37651 -36.32570 -34.49969 -34.13264 -32.74806 -29.26385 -28.24014 -26.63505 -25.42596 -24.39760 -23.22977 -22.95105 -22.07475 -20.34310 -19.47623 -19.06987 -18.11238 -17.12925 -16.76488 -16.43717 -16.07334 -15.67911 -15.53695 -15.34838 -15.03526 -14.53482 -14.29826 -14.08337 -13.92424 -13.60829 -13.38681 -13.13907 -13.11991 -12.91992 -12.71512 -12.47074 -12.19495 -12.12776 -11.93834 -11.74417 -11.67348 -11.36172 -11.29614 -11.15061 -10.87353 -10.53180 -10.05781 -9.69966 -8.98816 -7.95894 -5.24397 0.36895 1.46322 1.47383 1.57554 2.25748 2.30279 2.55415 3.06092 3.37108 3.59370 3.60672 3.63221 3.84673 3.93638 3.96749 4.04963 4.15564 4.25775 4.32666 4.43309 4.56802 4.66258 4.73920 4.76686 4.81994 4.83757 4.90662 4.92089 4.96695 4.97998 5.09499 5.15365 5.23111 5.26759 5.28126 5.39471 5.45723 5.49712 5.65167 5.73001 6.27117 6.65873 7.32731 7.33609 8.10475 8.33020 9.28037 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031374 B = 0.002732 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.250322 B =10247.140212 C =10549.483063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.003 3.997 3 C -0.243 4.243 4 C 0.539 3.461 5 O -0.576 6.576 6 N -0.701 5.701 7 C 0.128 3.872 8 H 0.091 0.909 9 C -0.116 4.116 10 C -0.110 4.110 11 H 0.085 0.915 12 C 0.160 3.840 13 N -0.746 5.746 14 C -0.244 4.244 15 H 0.075 0.925 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.974 3.026 19 H -0.266 1.266 20 H -0.291 1.291 21 H -0.294 1.294 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.165 4.165 25 C -0.167 4.167 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.412 0.588 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.019 0.981 34 H 0.023 0.977 35 H 0.373 0.627 36 H 0.251 0.749 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.406 -17.058 -14.152 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.001 3.999 3 C -0.264 4.264 4 C 0.330 3.670 5 O -0.458 6.458 6 N -0.352 5.352 7 C 0.022 3.978 8 H 0.109 0.891 9 C -0.154 4.154 10 C -0.129 4.129 11 H 0.103 0.897 12 C 0.034 3.966 13 N -0.388 5.388 14 C -0.376 4.376 15 H 0.093 0.907 16 C -0.271 4.271 17 N -0.622 5.622 18 Si 0.803 3.197 19 H -0.190 1.190 20 H -0.219 1.219 21 H -0.221 1.221 22 C -0.182 4.182 23 C -0.158 4.158 24 C -0.202 4.202 25 C -0.205 4.205 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.171 0.829 30 H 0.248 0.752 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.204 0.796 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.794 -17.692 -14.010 25.942 hybrid contribution 0.465 1.264 1.018 1.689 sum -12.329 -16.427 -12.992 24.304 Atomic orbital electron populations 1.21098 0.88483 1.04372 1.04328 1.22143 0.96939 0.92492 0.88347 1.22469 0.91782 1.00288 1.11866 1.19091 0.89041 0.82931 0.75898 1.90728 1.71997 1.32699 1.50368 1.45572 1.06880 1.10751 1.71982 1.21701 0.80772 0.99355 0.95988 0.89090 1.23211 1.02273 0.93763 0.96154 1.22667 0.98479 0.94423 0.97310 0.89679 1.20829 0.95508 0.92146 0.88155 1.42603 1.16132 1.48438 1.31647 1.19707 0.95864 1.14762 1.07304 0.90682 1.25598 0.99104 1.02969 0.99424 1.69829 1.22536 1.45970 1.23832 0.85056 0.78613 0.78231 0.77762 1.19005 1.21853 1.22101 1.23411 1.01288 0.96454 0.97048 1.21410 1.00483 0.89674 1.04246 1.23231 0.99942 0.97125 0.99879 1.22829 1.02943 1.02744 0.91935 0.88537 0.89842 0.89833 0.82859 0.75158 0.87636 0.89000 0.96264 0.95934 0.79580 0.94027 0.93391 0.89874 0.87729 0.86432 0.88027 0.89583 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.49 71.24 0.68 -0.59 16 2 C 0.00 0.05 5.80 -17.61 -0.10 -0.05 16 3 C -0.24 -4.73 9.62 23.43 0.23 -4.50 16 4 C 0.54 14.07 7.67 86.57 0.66 14.74 16 5 O -0.58 -18.92 12.93 -4.10 -0.05 -18.97 16 6 N -0.70 -16.35 5.26 -443.62 -2.34 -18.69 16 7 C 0.13 3.29 4.30 45.52 0.20 3.49 16 8 H 0.09 2.51 7.50 -2.39 -0.02 2.50 16 9 C -0.12 -2.65 7.38 31.12 0.23 -2.42 16 10 C -0.11 -3.42 3.64 -10.27 -0.04 -3.46 16 11 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 12 C 0.16 6.40 6.10 86.38 0.53 6.93 16 13 N -0.75 -38.84 5.60 -343.44 -1.92 -40.76 16 14 C -0.24 -13.98 9.99 84.03 0.84 -13.14 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 17 N -0.97 -60.52 13.06 21.65 0.28 -60.23 16 18 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 22 C -0.14 -4.49 7.44 31.12 0.23 -4.26 16 23 C -0.14 -2.91 4.35 -11.54 -0.05 -2.96 16 24 C -0.17 -2.40 9.79 30.59 0.30 -2.10 16 25 C -0.17 -3.24 10.23 30.59 0.31 -2.93 16 26 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 0.70 6.37 -2.39 -0.02 0.68 16 28 H 0.08 0.71 8.07 -2.39 -0.02 0.69 16 29 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.41 7.64 8.69 -92.71 -0.81 6.84 16 31 H 0.11 2.23 8.10 -2.39 -0.02 2.21 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.02 0.78 7.85 -2.39 -0.02 0.76 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.37 20.66 7.67 -92.71 -0.71 19.95 16 36 H 0.25 15.09 8.31 -92.71 -0.77 14.31 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.68 7.90 -2.39 -0.02 2.66 16 39 H 0.10 2.79 6.24 -2.39 -0.01 2.78 16 40 H 0.12 1.18 6.31 -2.39 -0.02 1.17 16 41 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -71.91 353.06 1.97 -69.94 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -0.51 Total: 35.25 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 4.48 Total: -15.43 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -3.98 Total: -119.68 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -71.91 1.97 -69.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330569259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.179 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds