Wall clock time and date at job start Tue Mar 31 2020 00:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32994 * 119.99804 * 2 1 4 4 C 1.47112 * 120.00029 * 353.10247 * 3 2 1 5 5 O 1.21607 * 119.99872 * 353.76634 * 4 3 2 6 6 N 1.34775 * 120.00054 * 173.76831 * 4 3 2 7 7 C 1.46492 * 119.99912 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.85315 * 23.80938 * 7 6 4 9 9 C 1.53787 * 113.61260 * 155.00094 * 7 6 4 10 10 C 1.53788 * 87.08040 * 89.20358 * 9 7 6 11 11 H 1.09004 * 113.61210 * 270.79963 * 10 9 7 12 12 C 1.52995 * 113.61709 * 139.98401 * 10 9 7 13 13 N 1.46496 * 109.47507 * 175.00086 * 12 10 9 14 14 C 1.36938 * 120.00346 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99476 * 359.97438 * 14 13 12 16 16 C 1.38804 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31627 * 120.00219 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00079 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46945 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.46655 * 299.99899 * 18 16 14 21 21 H 1.48494 * 109.47058 * 59.99908 * 18 16 14 22 22 C 1.53782 * 87.08148 * 25.42908 * 10 9 7 23 23 C 1.50690 * 120.00220 * 179.97438 * 2 1 3 24 24 C 1.53002 * 117.50004 * 8.62690 * 23 2 1 25 25 C 1.53001 * 60.00143 * 252.50761 * 24 23 2 26 26 H 1.08998 * 109.47098 * 84.53823 * 1 2 3 27 27 H 1.09001 * 109.47373 * 204.53636 * 1 2 3 28 28 H 1.09005 * 109.47687 * 324.53820 * 1 2 3 29 29 H 1.07996 * 120.00130 * 173.10061 * 3 2 1 30 30 H 0.97008 * 119.99954 * 0.02562 * 6 4 3 31 31 H 1.09000 * 113.61423 * 334.65291 * 9 7 6 32 32 H 1.08995 * 113.61593 * 203.74567 * 9 7 6 33 33 H 1.09001 * 109.47372 * 54.99547 * 12 10 9 34 34 H 1.09003 * 109.46666 * 295.00161 * 12 10 9 35 35 H 0.97005 * 119.99548 * 359.97438 * 13 12 10 36 36 H 0.97001 * 119.99401 * 359.97438 * 17 16 14 37 37 H 1.09006 * 113.60991 * 89.11556 * 22 10 9 38 38 H 1.08997 * 113.61605 * 220.01964 * 22 10 9 39 39 H 1.09005 * 115.55269 * 154.33144 * 23 2 1 40 40 H 1.08995 * 117.49714 * 359.97438 * 24 23 2 41 41 H 1.08999 * 117.49983 * 145.01766 * 24 23 2 42 42 H 1.09000 * 117.49642 * 252.51463 * 25 24 23 43 43 H 1.08991 * 117.50195 * 107.48511 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1530 5 8 0.2521 2.4136 -0.3926 6 7 2.0990 3.5925 -0.0276 7 6 1.3745 4.8566 -0.1806 8 1 0.3073 4.7596 0.0187 9 6 2.0333 6.0368 0.5530 10 6 2.8394 6.2842 -0.7331 11 1 3.7804 5.7353 -0.7709 12 6 3.0014 7.7655 -1.0795 13 7 3.8781 7.9015 -2.2453 14 6 4.1697 9.1440 -2.7416 15 1 3.7529 10.0237 -2.2738 16 6 5.0008 9.2727 -3.8458 17 7 5.5083 8.2005 -4.4162 18 14 5.3991 10.9677 -4.5225 19 1 6.2998 10.8333 -5.6954 20 1 4.1431 11.6424 -4.9381 21 1 6.0704 11.7748 -3.4722 22 6 1.6919 5.5960 -1.4911 23 6 2.2605 -1.3050 0.0006 24 6 1.4517 -2.5878 -0.2024 25 6 2.0260 -2.2557 1.1763 26 1 -0.3633 0.0978 -1.0230 27 1 -0.3634 -0.9349 0.4268 28 1 -0.3634 0.8370 0.5962 29 1 3.2460 1.1552 0.1123 30 1 3.0501 3.5986 0.1631 31 1 2.6471 5.7355 1.4019 32 1 1.3400 6.8421 0.7953 33 1 3.4403 8.2912 -0.2315 34 1 2.0253 8.1942 -1.3069 35 1 4.2521 7.1112 -2.6656 36 1 5.3017 7.3204 -4.0646 37 1 0.9051 6.2809 -1.8075 38 1 2.0300 4.9389 -2.2923 39 1 3.2632 -1.2691 -0.4254 40 1 0.3746 -2.4879 -0.3360 41 1 1.9222 -3.3961 -0.7622 42 1 2.8744 -2.8454 1.5234 43 1 1.3268 -1.9371 1.9493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330569260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:12 Heat of formation + Delta-G solvation = 31.812874 kcal Electronic energy + Delta-G solvation = -20811.626151 eV Core-core repulsion = 17665.794503 eV Total energy + Delta-G solvation = -3145.831648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32607 -38.91034 -37.88765 -34.78986 -33.36924 -33.22837 -30.75996 -28.08467 -26.52863 -25.53158 -24.50950 -23.12385 -22.77642 -21.65399 -20.97196 -19.18799 -18.62170 -17.25275 -17.09166 -16.47195 -15.74481 -15.23376 -14.87173 -14.84466 -14.47477 -13.74924 -13.61543 -13.50700 -13.33490 -13.16904 -12.98436 -12.44202 -12.23003 -12.19249 -11.88651 -11.69888 -11.58099 -11.27326 -10.84912 -10.72084 -10.67233 -10.49665 -10.28363 -9.98884 -9.91445 -9.66257 -9.27053 -9.10896 -8.88379 -8.79848 -6.95850 -6.07688 -3.06395 1.11472 3.10487 3.15529 3.52955 3.53116 3.57111 3.74490 4.19452 4.43400 4.50796 4.64998 4.65392 4.66556 4.80535 4.83083 5.01559 5.08443 5.11040 5.19446 5.35141 5.45080 5.58066 5.64204 5.65870 5.70312 5.71241 5.80618 5.86700 5.90117 5.94708 6.03724 6.19154 6.24030 6.26152 6.30604 6.37206 6.63709 6.73732 6.88820 7.51729 7.83679 8.21926 8.79074 9.27429 10.13784 10.29307 11.41183 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.002624 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.783432 B =10667.604532 C =11170.527120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.000 4.000 3 C -0.228 4.228 4 C 0.548 3.452 5 O -0.543 6.543 6 N -0.707 5.707 7 C 0.117 3.883 8 H 0.099 0.901 9 C -0.137 4.137 10 C -0.115 4.115 11 H 0.086 0.914 12 C 0.168 3.832 13 N -0.743 5.743 14 C -0.330 4.330 15 H 0.064 0.936 16 C -0.048 4.048 17 N -0.945 5.945 18 Si 1.081 2.919 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.295 1.295 22 C -0.139 4.139 23 C -0.135 4.135 24 C -0.172 4.172 25 C -0.167 4.167 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.401 0.599 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.019 0.981 34 H 0.021 0.979 35 H 0.366 0.634 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 -19.942 13.151 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.002 4.002 3 C -0.249 4.249 4 C 0.338 3.662 5 O -0.423 6.423 6 N -0.356 5.356 7 C 0.012 3.988 8 H 0.117 0.883 9 C -0.176 4.176 10 C -0.134 4.134 11 H 0.104 0.896 12 C 0.040 3.960 13 N -0.389 5.389 14 C -0.461 4.461 15 H 0.082 0.918 16 C -0.245 4.245 17 N -0.591 5.591 18 Si 0.911 3.089 19 H -0.210 1.210 20 H -0.223 1.223 21 H -0.223 1.223 22 C -0.178 4.178 23 C -0.153 4.153 24 C -0.209 4.209 25 C -0.204 4.204 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.144 0.856 30 H 0.236 0.764 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.199 0.801 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.149 -18.889 11.908 23.770 hybrid contribution -0.018 -0.930 1.119 1.455 sum -8.167 -19.819 13.026 25.083 Atomic orbital electron populations 1.21181 0.90791 1.02344 1.03840 1.21766 0.96145 0.92311 0.89984 1.22283 1.00370 0.91804 1.10417 1.18486 0.86911 0.84143 0.76656 1.90746 1.15166 1.87603 1.48746 1.45589 1.12620 1.05101 1.72336 1.21895 0.97018 0.82418 0.97464 0.88293 1.23304 0.99669 0.97387 0.97245 1.22774 0.97373 0.98090 0.95167 0.89620 1.20575 0.93729 0.91538 0.90124 1.42361 1.57435 1.05719 1.33364 1.20049 1.27937 0.85348 1.12796 0.91839 1.25787 0.97421 1.05644 0.95651 1.70884 1.47185 0.97905 1.43149 0.83234 0.75967 0.73579 0.76081 1.21034 1.22286 1.22291 1.23420 0.98965 0.98946 0.96482 1.21301 1.00311 0.88778 1.04878 1.23075 1.00513 0.97638 0.99631 1.22988 1.03722 1.01960 0.91689 0.90105 0.92696 0.89045 0.85568 0.76448 0.91244 0.88730 0.96351 0.96126 0.80090 0.93461 0.89163 0.91455 0.86510 0.87957 0.88208 0.88178 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 7.91 36.00 0.28 -0.97 16 2 C 0.00 0.00 5.81 -101.17 -0.59 -0.59 16 3 C -0.23 -2.36 9.67 -37.80 -0.37 -2.72 16 4 C 0.55 7.13 7.61 -12.66 -0.10 7.03 16 5 O -0.54 -8.58 12.88 5.27 0.07 -8.51 16 6 N -0.71 -8.45 5.26 -54.20 -0.29 -8.73 16 7 C 0.12 1.54 4.32 -67.12 -0.29 1.25 16 8 H 0.10 1.37 7.46 -51.93 -0.39 0.98 16 9 C -0.14 -1.72 7.39 -25.91 -0.19 -1.91 16 10 C -0.12 -1.83 3.63 -89.81 -0.33 -2.16 16 11 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 12 C 0.17 3.45 6.10 -4.05 -0.02 3.43 16 13 N -0.74 -19.29 5.60 -59.91 -0.34 -19.63 16 14 C -0.33 -9.61 9.99 -15.06 -0.15 -9.76 16 15 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 16 C -0.05 -1.42 5.50 -17.43 -0.10 -1.52 16 17 N -0.95 -29.87 13.70 55.49 0.76 -29.11 16 18 Si 1.08 26.42 29.92 -169.99 -5.09 21.34 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.14 -2.15 7.43 -25.92 -0.19 -2.34 16 23 C -0.13 -1.01 6.01 -91.77 -0.55 -1.56 16 24 C -0.17 -1.07 9.76 -26.73 -0.26 -1.33 16 25 C -0.17 -1.01 10.10 -26.73 -0.27 -1.28 16 26 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 27 H 0.05 0.43 6.30 -51.93 -0.33 0.10 16 28 H 0.09 1.09 6.12 -51.93 -0.32 0.77 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.40 4.00 8.69 -40.82 -0.35 3.64 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.44 7.84 -51.93 -0.41 0.03 16 35 H 0.37 9.69 6.50 -40.82 -0.27 9.43 16 36 H 0.25 7.90 6.77 -40.82 -0.28 7.63 16 37 H 0.09 1.42 7.90 -51.93 -0.41 1.01 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.63 6.42 -51.93 -0.33 0.30 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -34.02 351.08 -9.64 -43.66 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.93 Total: 10.13 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -3.12 Total: -14.44 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.14 Total: -57.47 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 26.42 SS G_CDS: -5.09 Total: 21.34 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.02 -9.64 -43.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330569260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.468 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds