Wall clock time and date at job start Tue Mar 31 2020 00:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32994 * 119.99804 * 2 1 4 4 C 1.47112 * 120.00029 * 353.10247 * 3 2 1 5 5 O 1.21607 * 119.99872 * 353.76634 * 4 3 2 6 6 N 1.34775 * 120.00054 * 173.76831 * 4 3 2 7 7 C 1.46492 * 119.99912 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.85315 * 23.80938 * 7 6 4 9 9 C 1.53787 * 113.61260 * 155.00094 * 7 6 4 10 10 C 1.53788 * 87.08040 * 89.20358 * 9 7 6 11 11 H 1.09004 * 113.61210 * 270.79963 * 10 9 7 12 12 C 1.52995 * 113.61709 * 139.98401 * 10 9 7 13 13 N 1.46496 * 109.47507 * 175.00086 * 12 10 9 14 14 C 1.36938 * 120.00346 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99476 * 359.97438 * 14 13 12 16 16 C 1.38804 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31627 * 120.00219 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00079 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46945 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.46655 * 299.99899 * 18 16 14 21 21 H 1.48494 * 109.47058 * 59.99908 * 18 16 14 22 22 C 1.53782 * 87.08148 * 25.42908 * 10 9 7 23 23 C 1.50690 * 120.00220 * 179.97438 * 2 1 3 24 24 C 1.53002 * 117.50004 * 8.62690 * 23 2 1 25 25 C 1.53001 * 60.00143 * 252.50761 * 24 23 2 26 26 H 1.08998 * 109.47098 * 84.53823 * 1 2 3 27 27 H 1.09001 * 109.47373 * 204.53636 * 1 2 3 28 28 H 1.09005 * 109.47687 * 324.53820 * 1 2 3 29 29 H 1.07996 * 120.00130 * 173.10061 * 3 2 1 30 30 H 0.97008 * 119.99954 * 0.02562 * 6 4 3 31 31 H 1.09000 * 113.61423 * 334.65291 * 9 7 6 32 32 H 1.08995 * 113.61593 * 203.74567 * 9 7 6 33 33 H 1.09001 * 109.47372 * 54.99547 * 12 10 9 34 34 H 1.09003 * 109.46666 * 295.00161 * 12 10 9 35 35 H 0.97005 * 119.99548 * 359.97438 * 13 12 10 36 36 H 0.97001 * 119.99401 * 359.97438 * 17 16 14 37 37 H 1.09006 * 113.60991 * 89.11556 * 22 10 9 38 38 H 1.08997 * 113.61605 * 220.01964 * 22 10 9 39 39 H 1.09005 * 115.55269 * 154.33144 * 23 2 1 40 40 H 1.08995 * 117.49714 * 359.97438 * 24 23 2 41 41 H 1.08999 * 117.49983 * 145.01766 * 24 23 2 42 42 H 1.09000 * 117.49642 * 252.51463 * 25 24 23 43 43 H 1.08991 * 117.50195 * 107.48511 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1530 5 8 0.2521 2.4136 -0.3926 6 7 2.0990 3.5925 -0.0276 7 6 1.3745 4.8566 -0.1806 8 1 0.3073 4.7596 0.0187 9 6 2.0333 6.0368 0.5530 10 6 2.8394 6.2842 -0.7331 11 1 3.7804 5.7353 -0.7709 12 6 3.0014 7.7655 -1.0795 13 7 3.8781 7.9015 -2.2453 14 6 4.1697 9.1440 -2.7416 15 1 3.7529 10.0237 -2.2738 16 6 5.0008 9.2727 -3.8458 17 7 5.5083 8.2005 -4.4162 18 14 5.3991 10.9677 -4.5225 19 1 6.2998 10.8333 -5.6954 20 1 4.1431 11.6424 -4.9381 21 1 6.0704 11.7748 -3.4722 22 6 1.6919 5.5960 -1.4911 23 6 2.2605 -1.3050 0.0006 24 6 1.4517 -2.5878 -0.2024 25 6 2.0260 -2.2557 1.1763 26 1 -0.3633 0.0978 -1.0230 27 1 -0.3634 -0.9349 0.4268 28 1 -0.3634 0.8370 0.5962 29 1 3.2460 1.1552 0.1123 30 1 3.0501 3.5986 0.1631 31 1 2.6471 5.7355 1.4019 32 1 1.3400 6.8421 0.7953 33 1 3.4403 8.2912 -0.2315 34 1 2.0253 8.1942 -1.3069 35 1 4.2521 7.1112 -2.6656 36 1 5.3017 7.3204 -4.0646 37 1 0.9051 6.2809 -1.8075 38 1 2.0300 4.9389 -2.2923 39 1 3.2632 -1.2691 -0.4254 40 1 0.3746 -2.4879 -0.3360 41 1 1.9222 -3.3961 -0.7622 42 1 2.8744 -2.8454 1.5234 43 1 1.3268 -1.9371 1.9493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330569260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:11 Heat of formation + Delta-G solvation = 10.503332 kcal Electronic energy + Delta-G solvation = -20812.550202 eV Core-core repulsion = 17665.794503 eV Total energy + Delta-G solvation = -3146.755699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38709 -39.91148 -38.67099 -36.69704 -34.51891 -34.12915 -32.68982 -29.07402 -28.05822 -26.70923 -25.62536 -24.84718 -23.24092 -23.10089 -21.89283 -20.39544 -19.46707 -19.25701 -18.10641 -17.19639 -17.01128 -16.49403 -16.17155 -15.90399 -15.72343 -15.41199 -15.11708 -14.76169 -14.61598 -14.17153 -13.97275 -13.68209 -13.43064 -13.04417 -12.90650 -12.68300 -12.56440 -12.48898 -12.24281 -11.95346 -11.87633 -11.86375 -11.64047 -11.37917 -11.34646 -11.07512 -10.88635 -10.65884 -10.16939 -9.75434 -9.11678 -8.42480 -5.35567 0.29958 1.57160 1.67654 1.84152 2.16222 2.22105 2.70417 2.98978 3.36732 3.48256 3.51790 3.54736 3.83910 3.84929 3.87432 3.93610 4.10659 4.11169 4.12995 4.28161 4.46369 4.63828 4.67634 4.73462 4.76192 4.80094 4.81581 4.84666 4.88781 4.97916 5.04945 5.07614 5.12588 5.17903 5.23945 5.30247 5.50086 5.52192 5.56113 5.65449 6.47410 6.57558 7.08414 7.24640 7.99232 8.10172 9.09802 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.002624 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.783432 B =10667.604532 C =11170.527120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.006 3.994 3 C -0.242 4.242 4 C 0.541 3.459 5 O -0.578 6.578 6 N -0.701 5.701 7 C 0.128 3.872 8 H 0.094 0.906 9 C -0.116 4.116 10 C -0.112 4.112 11 H 0.085 0.915 12 C 0.165 3.835 13 N -0.757 5.757 14 C -0.337 4.337 15 H 0.066 0.934 16 C -0.107 4.107 17 N -0.975 5.975 18 Si 1.130 2.870 19 H -0.292 1.292 20 H -0.278 1.278 21 H -0.275 1.275 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.170 4.170 25 C -0.157 4.157 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.412 0.588 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.360 0.640 36 H 0.243 0.757 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -20.579 14.563 26.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.004 3.996 3 C -0.262 4.262 4 C 0.333 3.667 5 O -0.460 6.460 6 N -0.351 5.351 7 C 0.022 3.978 8 H 0.113 0.887 9 C -0.154 4.154 10 C -0.131 4.131 11 H 0.103 0.897 12 C 0.039 3.961 13 N -0.402 5.402 14 C -0.468 4.468 15 H 0.084 0.916 16 C -0.298 4.298 17 N -0.623 5.623 18 Si 0.954 3.046 19 H -0.218 1.218 20 H -0.204 1.204 21 H -0.201 1.201 22 C -0.183 4.183 23 C -0.167 4.167 24 C -0.207 4.207 25 C -0.194 4.194 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.167 0.833 30 H 0.249 0.751 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.191 0.809 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.143 0.857 40 H 0.119 0.881 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.926 -19.532 13.375 24.964 hybrid contribution -0.166 -0.787 0.709 1.073 sum -8.093 -20.320 14.084 26.014 Atomic orbital electron populations 1.21105 0.91464 1.02598 1.02762 1.22004 0.95939 0.93347 0.88301 1.22343 1.01342 0.90650 1.11912 1.18984 0.86666 0.85115 0.75912 1.90733 1.16721 1.88121 1.50449 1.45545 1.13155 1.04518 1.71882 1.21702 0.97106 0.83075 0.95868 0.88745 1.23218 0.99012 0.97004 0.96176 1.22692 0.97858 0.94845 0.97663 0.89666 1.20762 0.92317 0.94825 0.88197 1.42603 1.58221 1.04598 1.34750 1.20431 1.27152 0.86651 1.12598 0.91609 1.27294 0.97684 1.08386 0.96448 1.70998 1.48967 0.98078 1.44297 0.82614 0.76410 0.69942 0.75665 1.21784 1.20429 1.20145 1.23428 0.98688 0.99015 0.97135 1.21347 1.00693 0.88017 1.06653 1.23177 1.00445 0.97058 0.99987 1.23078 1.04080 1.00889 0.91338 0.91423 0.90552 0.91082 0.83334 0.75133 0.88959 0.87620 0.96153 0.96368 0.80863 0.94643 0.89826 0.93191 0.85666 0.88093 0.86914 0.86637 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 7.91 71.23 0.56 -1.88 16 2 C 0.01 0.11 5.81 -17.62 -0.10 0.01 16 3 C -0.24 -4.78 9.67 23.43 0.23 -4.55 16 4 C 0.54 13.94 7.61 86.57 0.66 14.60 16 5 O -0.58 -18.59 12.88 -4.05 -0.05 -18.64 16 6 N -0.70 -16.12 5.26 -443.64 -2.33 -18.45 16 7 C 0.13 3.26 4.32 45.52 0.20 3.46 16 8 H 0.09 2.56 7.46 -2.39 -0.02 2.54 16 9 C -0.12 -2.65 7.39 31.12 0.23 -2.42 16 10 C -0.11 -3.47 3.63 -10.27 -0.04 -3.50 16 11 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 12 C 0.17 6.72 6.10 86.38 0.53 7.25 16 13 N -0.76 -39.64 5.60 -343.47 -1.92 -41.56 16 14 C -0.34 -19.62 9.99 84.03 0.84 -18.78 16 15 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 16 C -0.11 -6.39 5.50 84.86 0.47 -5.93 16 17 N -0.98 -62.46 13.70 21.65 0.30 -62.17 16 18 Si 1.13 52.86 29.92 68.60 2.05 54.91 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 22 C -0.14 -4.45 7.43 31.12 0.23 -4.21 16 23 C -0.15 -1.94 6.01 -11.54 -0.07 -2.01 16 24 C -0.17 -1.75 9.76 30.60 0.30 -1.45 16 25 C -0.16 -1.52 10.10 30.60 0.31 -1.21 16 26 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 27 H 0.08 1.13 6.30 -2.39 -0.02 1.11 16 28 H 0.07 1.73 6.12 -2.38 -0.01 1.71 16 29 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.41 7.59 8.69 -92.70 -0.81 6.78 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.02 0.76 7.84 -2.39 -0.02 0.74 16 35 H 0.36 19.47 6.50 -92.70 -0.60 18.87 16 36 H 0.24 15.53 6.77 -92.71 -0.63 14.90 16 37 H 0.08 2.67 7.90 -2.38 -0.02 2.65 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.10 1.06 6.42 -2.39 -0.02 1.05 16 41 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.66 351.08 2.12 -71.54 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.26 Total: 35.02 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.34 Total: -20.64 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -3.96 Total: -122.18 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.64 kcal Atomic # 14 Polarization: 52.86 SS G_CDS: 2.05 Total: 54.91 kcal Total: -73.66 2.12 -71.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330569260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.039 kcal (2) G-P(sol) polarization free energy of solvation -73.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds