Wall clock time and date at job start Mon Mar 30 2020 23:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47124 * 119.99708 * 2 1 4 4 C 1.50704 * 119.99634 * 359.97438 * 3 2 1 5 5 C 1.32867 * 120.00236 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00192 * 173.87595 * 5 3 2 7 7 C 1.50701 * 109.47417 * 233.38082 * 6 5 3 8 8 O 1.21277 * 119.99708 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00090 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99885 * 0.02562 * 9 7 6 11 11 C 1.46492 * 120.00002 * 180.02562 * 9 7 6 12 12 C 1.53779 * 113.61421 * 63.22931 * 11 9 7 13 13 C 1.53778 * 87.08371 * 89.11208 * 12 11 9 14 14 N 1.46496 * 113.61452 * 270.80044 * 13 12 11 15 15 C 1.36938 * 120.00040 * 200.25670 * 14 13 12 16 16 H 1.08003 * 119.99743 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00422 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99867 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00458 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47033 * 59.99595 * 19 17 15 21 21 H 1.48501 * 109.47350 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46886 * 299.99939 * 19 17 15 23 23 C 1.53782 * 87.17053 * 25.39189 * 13 12 11 24 24 H 1.07995 * 120.00351 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99261 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00854 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46887 * 264.72496 * 4 3 2 28 28 H 1.08990 * 109.47114 * 24.73197 * 4 3 2 29 29 H 1.09006 * 109.46776 * 144.73110 * 4 3 2 30 30 H 1.08003 * 119.99537 * 353.88207 * 5 3 2 31 31 H 1.09009 * 109.46642 * 113.38098 * 6 5 3 32 32 H 1.08999 * 109.47384 * 353.38776 * 6 5 3 33 33 H 1.08995 * 109.46756 * 271.25319 * 10 9 7 34 34 H 1.08997 * 109.46925 * 31.25445 * 10 9 7 35 35 H 1.08997 * 109.47117 * 151.25335 * 10 9 7 36 36 H 1.08998 * 112.91051 * 291.97274 * 11 9 7 37 37 H 1.09009 * 113.61366 * 334.56391 * 12 11 9 38 38 H 1.09005 * 113.61478 * 203.66709 * 12 11 9 39 39 H 1.09006 * 113.61270 * 139.97995 * 13 12 11 40 40 H 0.96998 * 120.00075 * 20.26112 * 14 13 12 41 41 H 0.96998 * 120.00552 * 179.97438 * 18 17 15 42 42 H 1.09006 * 113.60995 * 89.15932 * 23 13 12 43 43 H 1.08993 * 113.61179 * 220.05749 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 1.3106 2.5792 -0.0006 5 6 3.3930 1.2743 0.0005 6 6 4.1464 2.5719 -0.1387 7 6 5.1320 2.4614 -1.2734 8 8 5.2141 1.4305 -1.9069 9 7 5.9215 3.5084 -1.5847 10 6 5.8218 4.7539 -0.8197 11 6 6.8791 3.4011 -2.6880 12 6 6.2176 3.1813 -4.0587 13 6 6.1588 4.7125 -4.1882 14 7 4.9355 5.3014 -3.6377 15 6 4.5407 6.5522 -4.0311 16 1 5.1309 7.1044 -4.7475 17 6 3.3820 7.1105 -3.5092 18 7 2.6624 6.4374 -2.6366 19 14 2.8430 8.8164 -4.0464 20 1 2.6157 8.8246 -5.5139 21 1 1.5841 9.1807 -3.3479 22 1 3.9010 9.8005 -3.7039 23 6 7.3553 4.7637 -3.2235 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8689 -0.9352 0.0004 27 1 1.2112 2.9408 -1.0240 28 1 0.3205 2.4272 0.4290 29 1 1.8553 3.3136 0.5929 30 1 3.9329 0.3443 0.1006 31 1 4.6809 2.7828 0.7876 32 1 3.4441 3.3796 -0.3448 33 1 5.0668 5.3978 -1.2707 34 1 5.5391 4.5272 0.2083 35 1 6.7854 5.2632 -0.8276 36 1 7.6915 2.7052 -2.4786 37 1 5.2364 2.7101 -3.9995 38 1 6.8730 2.7061 -4.7887 39 1 6.3896 5.0752 -5.1898 40 1 4.4053 4.8053 -2.9946 41 1 1.8528 6.8275 -2.2716 42 1 8.3224 4.7222 -3.7248 43 1 7.2914 5.5683 -2.4910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333102925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:25 Heat of formation + Delta-G solvation = 41.193975 kcal Electronic energy + Delta-G solvation = -22523.977829 eV Core-core repulsion = 19378.552976 eV Total energy + Delta-G solvation = -3145.424853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.08150 -37.91277 -36.50322 -34.10967 -33.21682 -32.12583 -29.95557 -28.51781 -26.72926 -26.45845 -24.89095 -24.03099 -22.80358 -20.95920 -19.27896 -17.80900 -17.62684 -17.42302 -16.44952 -16.09550 -15.57637 -15.11598 -14.72853 -14.24027 -14.06401 -13.61650 -13.19058 -13.01121 -12.86793 -12.65710 -12.34820 -12.27180 -11.95845 -11.70592 -11.42718 -11.33896 -11.22778 -11.14656 -10.87725 -10.76546 -10.62917 -10.32778 -10.27564 -10.10723 -9.77392 -9.58634 -9.18346 -8.90111 -8.03176 -7.98903 -7.00984 -5.84083 -3.11779 1.50226 3.08638 3.19637 3.39650 3.45019 3.45423 3.55977 4.53684 4.85065 4.91967 5.05197 5.23683 5.28461 5.41097 5.45049 5.49547 5.53563 5.58366 5.66139 5.71068 5.79299 5.86430 5.90950 6.03169 6.03879 6.10892 6.20247 6.32572 6.36548 6.49564 6.50978 6.62847 6.69069 6.74478 6.78176 6.88753 6.93692 7.12432 7.20520 7.66713 7.90383 8.36165 8.68591 9.47239 10.04976 10.41907 11.38055 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.006141 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.426820 B = 4558.184534 C = 6054.653233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C -0.110 4.110 4 C -0.123 4.123 5 C -0.116 4.116 6 C -0.118 4.118 7 C 0.522 3.478 8 O -0.547 6.547 9 N -0.588 5.588 10 C 0.068 3.932 11 C 0.130 3.870 12 C -0.161 4.161 13 C 0.165 3.835 14 N -0.704 5.704 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.183 4.183 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.388 0.612 41 H 0.256 0.744 42 H 0.078 0.922 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -7.425 7.125 10.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.128 4.128 3 C -0.110 4.110 4 C -0.179 4.179 5 C -0.135 4.135 6 C -0.158 4.158 7 C 0.310 3.690 8 O -0.426 6.426 9 N -0.320 5.320 10 C -0.075 4.075 11 C 0.026 3.974 12 C -0.201 4.201 13 C 0.053 3.947 14 N -0.344 5.344 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.206 4.206 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.224 4.224 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.224 0.776 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.046 -7.759 6.718 10.706 hybrid contribution -0.393 0.805 -0.045 0.896 sum 2.653 -6.954 6.673 9.996 Atomic orbital electron populations 1.24384 0.95765 1.01871 1.01189 1.21857 0.95266 0.96053 0.99603 1.20585 0.93969 0.94374 1.02120 1.20894 0.99594 0.94154 1.03287 1.22758 0.93858 0.97638 0.99198 1.20856 0.98371 0.98701 0.97823 1.20354 0.80717 0.82884 0.85031 1.90640 1.68955 1.29532 1.53433 1.47469 1.38065 1.13810 1.32703 1.22097 1.03963 0.86655 0.94767 1.21760 0.90887 0.98202 0.86531 1.23686 1.01683 0.98870 0.95828 1.21143 0.87466 0.91119 0.94966 1.42304 1.23643 1.17354 1.51083 1.19252 1.05400 0.92322 1.20248 0.91180 1.24692 0.97676 0.98555 0.99698 1.69622 1.17298 1.37666 1.33365 0.86274 0.77691 0.84247 0.77976 1.21366 1.21735 1.21329 1.24236 1.00420 0.95863 1.01899 0.87924 0.88470 0.87115 0.90531 0.91973 0.91227 0.86878 0.88582 0.86931 0.88439 0.92389 0.91487 0.91451 0.90783 0.90024 0.92257 0.77646 0.93440 0.90323 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.25 14.12 28.88 0.41 -1.84 16 2 C -0.11 -1.43 9.83 -37.83 -0.37 -1.80 16 3 C -0.11 -1.60 5.98 -102.87 -0.62 -2.22 16 4 C -0.12 -1.74 8.52 36.01 0.31 -1.43 16 5 C -0.12 -1.74 8.45 -36.16 -0.31 -2.05 16 6 C -0.12 -1.80 4.32 -29.04 -0.13 -1.93 16 7 C 0.52 9.57 7.36 -10.98 -0.08 9.49 16 8 O -0.55 -11.57 14.98 5.56 0.08 -11.49 16 9 N -0.59 -10.32 2.09 -172.90 -0.36 -10.68 16 10 C 0.07 1.10 8.66 59.85 0.52 1.62 16 11 C 0.13 2.25 4.14 -67.03 -0.28 1.97 16 12 C -0.16 -3.01 7.12 -25.92 -0.18 -3.19 16 13 C 0.17 3.32 4.54 -67.12 -0.30 3.01 16 14 N -0.70 -16.92 4.04 -52.64 -0.21 -17.14 16 15 C -0.24 -6.37 9.98 -15.06 -0.15 -6.52 16 16 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -25.91 13.06 55.49 0.72 -25.19 16 19 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 C -0.18 -3.07 7.16 -25.83 -0.19 -3.25 16 24 H 0.10 1.16 6.05 -52.49 -0.32 0.84 16 25 H 0.10 0.93 8.06 -52.48 -0.42 0.51 16 26 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.06 0.76 6.17 -51.93 -0.32 0.44 16 29 H 0.07 0.94 6.76 -51.93 -0.35 0.59 16 30 H 0.11 1.66 8.05 -52.48 -0.42 1.24 16 31 H 0.10 1.20 7.40 -51.92 -0.38 0.82 16 32 H 0.11 1.83 5.81 -51.93 -0.30 1.53 16 33 H 0.10 1.98 6.26 -51.93 -0.33 1.66 16 34 H 0.06 0.78 6.49 -51.93 -0.34 0.44 16 35 H 0.07 1.00 6.40 -51.93 -0.33 0.67 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.61 7.18 -51.92 -0.37 1.24 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 40 H 0.39 9.81 5.65 -40.82 -0.23 9.58 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.38 5.84 -51.93 -0.30 1.07 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -29.64 341.74 -7.61 -37.25 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -6.50 Total: 14.13 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.46 Total: -8.51 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.15 Total: -53.00 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.64 -7.61 -37.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333102925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.442 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds