Wall clock time and date at job start Mon Mar 30 2020 23:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47124 * 119.99708 * 2 1 4 4 C 1.50704 * 119.99634 * 359.97438 * 3 2 1 5 5 C 1.32867 * 120.00236 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00192 * 173.87595 * 5 3 2 7 7 C 1.50701 * 109.47417 * 233.38082 * 6 5 3 8 8 O 1.21277 * 119.99708 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00090 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99885 * 0.02562 * 9 7 6 11 11 C 1.46492 * 120.00002 * 180.02562 * 9 7 6 12 12 C 1.53779 * 113.61421 * 63.22931 * 11 9 7 13 13 C 1.53778 * 87.08371 * 89.11208 * 12 11 9 14 14 N 1.46496 * 113.61452 * 270.80044 * 13 12 11 15 15 C 1.36938 * 120.00040 * 200.25670 * 14 13 12 16 16 H 1.08003 * 119.99743 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00422 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99867 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00458 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47033 * 59.99595 * 19 17 15 21 21 H 1.48501 * 109.47350 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46886 * 299.99939 * 19 17 15 23 23 C 1.53782 * 87.17053 * 25.39189 * 13 12 11 24 24 H 1.07995 * 120.00351 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99261 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00854 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46887 * 264.72496 * 4 3 2 28 28 H 1.08990 * 109.47114 * 24.73197 * 4 3 2 29 29 H 1.09006 * 109.46776 * 144.73110 * 4 3 2 30 30 H 1.08003 * 119.99537 * 353.88207 * 5 3 2 31 31 H 1.09009 * 109.46642 * 113.38098 * 6 5 3 32 32 H 1.08999 * 109.47384 * 353.38776 * 6 5 3 33 33 H 1.08995 * 109.46756 * 271.25319 * 10 9 7 34 34 H 1.08997 * 109.46925 * 31.25445 * 10 9 7 35 35 H 1.08997 * 109.47117 * 151.25335 * 10 9 7 36 36 H 1.08998 * 112.91051 * 291.97274 * 11 9 7 37 37 H 1.09009 * 113.61366 * 334.56391 * 12 11 9 38 38 H 1.09005 * 113.61478 * 203.66709 * 12 11 9 39 39 H 1.09006 * 113.61270 * 139.97995 * 13 12 11 40 40 H 0.96998 * 120.00075 * 20.26112 * 14 13 12 41 41 H 0.96998 * 120.00552 * 179.97438 * 18 17 15 42 42 H 1.09006 * 113.60995 * 89.15932 * 23 13 12 43 43 H 1.08993 * 113.61179 * 220.05749 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 1.3106 2.5792 -0.0006 5 6 3.3930 1.2743 0.0005 6 6 4.1464 2.5719 -0.1387 7 6 5.1320 2.4614 -1.2734 8 8 5.2141 1.4305 -1.9069 9 7 5.9215 3.5084 -1.5847 10 6 5.8218 4.7539 -0.8197 11 6 6.8791 3.4011 -2.6880 12 6 6.2176 3.1813 -4.0587 13 6 6.1588 4.7125 -4.1882 14 7 4.9355 5.3014 -3.6377 15 6 4.5407 6.5522 -4.0311 16 1 5.1309 7.1044 -4.7475 17 6 3.3820 7.1105 -3.5092 18 7 2.6624 6.4374 -2.6366 19 14 2.8430 8.8164 -4.0464 20 1 2.6157 8.8246 -5.5139 21 1 1.5841 9.1807 -3.3479 22 1 3.9010 9.8005 -3.7039 23 6 7.3553 4.7637 -3.2235 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8689 -0.9352 0.0004 27 1 1.2112 2.9408 -1.0240 28 1 0.3205 2.4272 0.4290 29 1 1.8553 3.3136 0.5929 30 1 3.9329 0.3443 0.1006 31 1 4.6809 2.7828 0.7876 32 1 3.4441 3.3796 -0.3448 33 1 5.0668 5.3978 -1.2707 34 1 5.5391 4.5272 0.2083 35 1 6.7854 5.2632 -0.8276 36 1 7.6915 2.7052 -2.4786 37 1 5.2364 2.7101 -3.9995 38 1 6.8730 2.7061 -4.7887 39 1 6.3896 5.0752 -5.1898 40 1 4.4053 4.8053 -2.9946 41 1 1.8528 6.8275 -2.2716 42 1 8.3224 4.7222 -3.7248 43 1 7.2914 5.5683 -2.4910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333102925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:25 Heat of formation + Delta-G solvation = 25.534783 kcal Electronic energy + Delta-G solvation = -22524.656863 eV Core-core repulsion = 19378.552976 eV Total energy + Delta-G solvation = -3146.103887 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51930 -39.35040 -37.68037 -35.71015 -34.95865 -33.25744 -31.83149 -29.70097 -28.10415 -27.66598 -26.48643 -25.68254 -24.37702 -22.16784 -20.63199 -19.44527 -19.12430 -18.74067 -17.78749 -17.49090 -16.93254 -16.59198 -16.45140 -15.62545 -15.51923 -14.99394 -14.86196 -14.51522 -14.15937 -13.93636 -13.75179 -13.49491 -13.28110 -13.19605 -13.05755 -12.72987 -12.56313 -12.55170 -12.44339 -12.28450 -12.16568 -11.72675 -11.69784 -11.65569 -11.38930 -11.13172 -10.81789 -10.63330 -9.44075 -9.09776 -8.93056 -7.88156 -5.15712 0.44413 1.50996 1.52317 1.57919 1.70271 2.02748 2.29407 2.59418 3.42329 3.54372 3.77755 3.79790 3.91010 3.96852 4.02390 4.27797 4.32509 4.35342 4.38454 4.44926 4.46103 4.57116 4.71154 4.79021 4.85641 4.88764 4.91768 4.99862 5.03258 5.11650 5.16378 5.27859 5.31730 5.45433 5.48802 5.57015 5.61339 5.78539 5.82231 6.05422 6.33910 6.51655 7.27141 7.40610 8.15352 8.42368 9.33591 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.006141 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.426820 B = 4558.184534 C = 6054.653233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.137 4.137 3 C -0.111 4.111 4 C -0.120 4.120 5 C -0.133 4.133 6 C -0.110 4.110 7 C 0.514 3.486 8 O -0.581 6.581 9 N -0.588 5.588 10 C 0.074 3.926 11 C 0.127 3.873 12 C -0.156 4.156 13 C 0.145 3.855 14 N -0.715 5.715 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.062 4.062 18 N -0.956 5.956 19 Si 0.966 3.034 20 H -0.288 1.288 21 H -0.297 1.297 22 H -0.278 1.278 23 C -0.158 4.158 24 H 0.104 0.896 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.379 0.621 41 H 0.250 0.750 42 H 0.114 0.886 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -7.451 7.675 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.111 4.111 4 C -0.177 4.177 5 C -0.151 4.151 6 C -0.149 4.149 7 C 0.303 3.697 8 O -0.462 6.462 9 N -0.320 5.320 10 C -0.068 4.068 11 C 0.023 3.977 12 C -0.195 4.195 13 C 0.035 3.965 14 N -0.355 5.355 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.255 4.255 18 N -0.606 5.606 19 Si 0.796 3.204 20 H -0.214 1.214 21 H -0.224 1.224 22 H -0.204 1.204 23 C -0.199 4.199 24 H 0.122 0.878 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.213 0.787 41 H 0.059 0.941 42 H 0.132 0.868 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.998 -7.773 7.255 11.359 hybrid contribution -0.703 0.763 -0.285 1.076 sum 3.294 -7.009 6.970 10.419 Atomic orbital electron populations 1.24646 0.95310 1.03097 0.98313 1.21968 0.95974 0.95726 1.01776 1.20800 0.94077 0.95141 1.01114 1.20868 1.00835 0.94250 1.01730 1.22762 0.94146 0.97507 1.00724 1.20805 0.97611 0.98502 0.97944 1.20898 0.80869 0.82521 0.85379 1.90610 1.70010 1.30861 1.54711 1.47586 1.37846 1.13882 1.32702 1.22028 1.03527 0.85627 0.95655 1.21885 0.91038 0.98885 0.85847 1.23672 1.00492 0.97494 0.97850 1.21437 0.87502 0.91929 0.95657 1.42391 1.25088 1.16781 1.51200 1.19544 1.05256 0.93189 1.19625 0.90988 1.25356 0.98134 1.01673 1.00369 1.69767 1.17452 1.38827 1.34522 0.85340 0.77027 0.80864 0.77186 1.21435 1.22356 1.20423 1.24049 1.00234 0.95161 1.00429 0.87822 0.86106 0.86200 0.93252 0.90100 0.90898 0.86816 0.85636 0.88210 0.92454 0.89570 0.89930 0.89656 0.94559 0.87277 0.92321 0.78708 0.94077 0.86804 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 14.12 66.64 0.94 -2.83 16 2 C -0.14 -3.43 9.83 23.43 0.23 -3.20 16 3 C -0.11 -3.22 5.98 -18.70 -0.11 -3.34 16 4 C -0.12 -3.45 8.52 71.24 0.61 -2.85 16 5 C -0.13 -4.01 8.45 24.51 0.21 -3.80 16 6 C -0.11 -3.34 4.32 29.10 0.13 -3.21 16 7 C 0.51 18.90 7.36 87.66 0.65 19.54 16 8 O -0.58 -24.89 14.98 -3.02 -0.05 -24.94 16 9 N -0.59 -20.28 2.09 -819.34 -1.71 -22.00 16 10 C 0.07 2.35 8.66 127.77 1.11 3.45 16 11 C 0.13 4.20 4.14 45.58 0.19 4.39 16 12 C -0.16 -5.71 7.12 31.12 0.22 -5.49 16 13 C 0.15 5.72 4.54 45.52 0.21 5.92 16 14 N -0.71 -34.78 4.04 -320.45 -1.29 -36.08 16 15 C -0.24 -12.99 9.98 84.03 0.84 -12.15 16 16 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 17 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 18 N -0.96 -54.38 13.06 21.65 0.28 -54.09 16 19 Si 0.97 44.46 29.55 68.60 2.03 46.48 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 C -0.16 -4.94 7.16 31.18 0.22 -4.71 16 24 H 0.10 2.17 6.05 -2.91 -0.02 2.15 16 25 H 0.12 1.98 8.06 -2.91 -0.02 1.96 16 26 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.95 6.17 -2.39 -0.01 1.93 16 29 H 0.07 2.00 6.76 -2.38 -0.02 1.98 16 30 H 0.11 3.37 8.05 -2.91 -0.02 3.35 16 31 H 0.13 2.97 7.40 -2.38 -0.02 2.95 16 32 H 0.10 3.33 5.81 -2.39 -0.01 3.31 16 33 H 0.06 2.36 6.26 -2.39 -0.01 2.34 16 34 H 0.09 2.20 6.49 -2.39 -0.02 2.18 16 35 H 0.08 2.33 6.40 -2.39 -0.02 2.31 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.04 1.61 7.18 -2.38 -0.02 1.59 16 38 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 39 H 0.06 2.29 8.12 -2.38 -0.02 2.27 16 40 H 0.38 19.71 5.65 -92.71 -0.52 19.18 16 41 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 43 H 0.07 2.40 5.84 -2.39 -0.01 2.38 16 Total: -1.00 -64.82 341.74 5.63 -59.18 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: 0.48 Total: 42.61 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 5.90 Total: -11.17 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -2.72 Total: -112.17 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.82 5.63 -59.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333102925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.717 kcal (2) G-P(sol) polarization free energy of solvation -64.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds