Wall clock time and date at job start Mon Mar 30 2020 23:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47112 * 120.00168 * 2 1 4 4 C 1.50700 * 119.99976 * 5.49566 * 3 2 1 5 5 C 1.32869 * 120.00008 * 185.50036 * 3 2 1 6 6 C 1.50696 * 120.00031 * 6.24643 * 5 3 2 7 7 C 1.50701 * 109.46875 * 126.12831 * 6 5 3 8 8 O 1.21271 * 120.00505 * 359.97438 * 7 6 5 9 9 N 1.34788 * 119.99662 * 179.72659 * 7 6 5 10 10 C 1.46501 * 120.00102 * 0.27229 * 9 7 6 11 11 C 1.46496 * 119.99726 * 180.27254 * 9 7 6 12 12 C 1.53779 * 113.61308 * 217.49501 * 11 9 7 13 13 C 1.53783 * 87.08113 * 220.02122 * 12 11 9 14 14 N 1.46503 * 113.69012 * 139.99419 * 13 12 11 15 15 C 1.36935 * 119.99912 * 107.46631 * 14 13 12 16 16 H 1.08004 * 120.00265 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99840 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00135 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00009 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47156 * 60.00444 * 19 17 15 21 21 H 1.48503 * 109.47025 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46964 * 300.00165 * 19 17 15 23 23 C 1.53780 * 87.08290 * 25.43352 * 13 12 11 24 24 H 1.08003 * 120.00464 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99884 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99686 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47462 * 270.00234 * 4 3 2 28 28 H 1.08997 * 109.47174 * 29.99951 * 4 3 2 29 29 H 1.08997 * 109.47001 * 149.99995 * 4 3 2 30 30 H 1.08006 * 120.00045 * 186.25146 * 5 3 2 31 31 H 1.09000 * 109.47343 * 6.12889 * 6 5 3 32 32 H 1.08996 * 109.47194 * 246.12547 * 6 5 3 33 33 H 1.08996 * 109.47058 * 89.99733 * 10 9 7 34 34 H 1.08992 * 109.46820 * 210.00161 * 10 9 7 35 35 H 1.09002 * 109.47038 * 330.00144 * 10 9 7 36 36 H 1.09002 * 112.85190 * 348.80346 * 11 9 7 37 37 H 1.09000 * 113.61754 * 334.56690 * 12 11 9 38 38 H 1.09002 * 113.61083 * 105.47506 * 12 11 9 39 39 H 1.09001 * 113.61560 * 270.88340 * 13 12 11 40 40 H 0.97001 * 119.99750 * 287.46156 * 14 13 12 41 41 H 0.96998 * 120.00628 * 179.97438 * 18 17 15 42 42 H 1.08993 * 113.61508 * 220.02112 * 23 13 12 43 43 H 1.09004 * 113.61628 * 89.11299 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5761 0.1250 5 6 3.3884 1.2766 -0.1103 6 6 4.1249 -0.0109 -0.3764 7 6 5.0035 0.1545 -1.5895 8 8 5.0288 1.2133 -2.1802 9 7 5.7651 -0.8730 -2.0151 10 6 5.7342 -2.1523 -1.3020 11 6 6.6237 -0.7103 -3.1909 12 6 6.6952 -1.9633 -4.0795 13 6 8.1941 -1.6629 -4.2470 14 7 9.0409 -2.8581 -4.2177 15 6 9.6202 -3.3151 -5.3712 16 1 9.4533 -2.7943 -6.3025 17 6 10.4230 -4.4472 -5.3434 18 7 10.6269 -5.0816 -4.2084 19 14 11.2128 -5.0711 -6.9171 20 1 12.0969 -4.0183 -7.4784 21 1 12.0147 -6.2853 -6.6207 22 1 10.1541 -5.4061 -7.9031 23 6 8.1175 -0.9290 -2.8978 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8687 -0.9354 -0.0004 27 1 1.0503 2.9393 -0.8678 28 1 0.4093 2.4195 0.7092 29 1 1.9472 3.3114 0.6240 30 1 3.9369 2.2015 -0.0092 31 1 3.4060 -0.8106 -0.5547 32 1 4.7410 -0.2621 0.4869 33 1 4.9589 -2.7880 -1.7296 34 1 6.7017 -2.6449 -1.3974 35 1 5.5187 -1.9757 -0.2481 36 1 6.4167 0.2067 -3.7426 37 1 6.4931 -2.8908 -3.5437 38 1 6.1262 -1.8753 -5.0050 39 1 8.4166 -1.0071 -5.0887 40 1 9.1912 -3.3256 -3.3812 41 1 11.1875 -5.8729 -4.1889 42 1 8.6965 -0.0060 -2.8693 43 1 8.3041 -1.5736 -2.0388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333102937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:29 Heat of formation + Delta-G solvation = 31.803310 kcal Electronic energy + Delta-G solvation = -21129.519110 eV Core-core repulsion = 17983.687047 eV Total energy + Delta-G solvation = -3145.832063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17824 -38.23222 -36.96187 -34.76563 -33.17112 -32.08510 -30.30730 -29.76532 -26.96532 -26.05327 -25.11455 -24.23553 -22.47918 -21.79636 -19.43088 -18.78704 -17.77209 -17.13436 -17.09790 -16.20616 -16.05236 -15.35169 -14.83234 -14.45857 -14.33461 -13.84071 -13.49989 -13.24660 -13.01149 -12.81606 -12.77755 -12.56740 -12.34526 -12.16397 -11.99301 -11.82927 -11.68279 -11.25099 -10.90269 -10.87057 -10.67454 -10.57199 -10.46606 -10.28243 -10.01516 -9.73974 -9.53337 -8.90823 -8.43887 -8.40384 -7.00563 -5.81691 -3.10555 1.12587 2.68501 2.75587 3.19530 3.42073 3.46631 3.47485 4.43898 4.56850 4.57647 4.64150 4.84412 5.06612 5.09697 5.14161 5.21071 5.25520 5.31120 5.38233 5.41696 5.44177 5.45549 5.53389 5.57623 5.75269 5.79532 5.85420 5.96181 6.13761 6.16143 6.20953 6.28236 6.33667 6.45493 6.50201 6.56152 6.71965 6.80920 7.03501 7.54799 7.66875 8.25948 8.36858 9.48132 10.04725 10.39536 11.40663 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042483 B = 0.002775 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.924260 B =10086.499796 C =10286.926898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.119 4.119 7 C 0.515 3.485 8 O -0.544 6.544 9 N -0.600 5.600 10 C 0.074 3.926 11 C 0.116 3.884 12 C -0.174 4.174 13 C 0.169 3.831 14 N -0.710 5.710 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.163 4.163 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.613 9.768 11.356 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C -0.115 4.115 4 C -0.170 4.170 5 C -0.132 4.132 6 C -0.158 4.158 7 C 0.303 3.697 8 O -0.422 6.422 9 N -0.332 5.332 10 C -0.070 4.070 11 C 0.013 3.987 12 C -0.216 4.216 13 C 0.057 3.943 14 N -0.347 5.347 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.203 4.203 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.486 10.251 10.861 22.996 hybrid contribution 0.512 -0.791 -0.504 1.069 sum -16.974 9.460 10.357 22.020 Atomic orbital electron populations 1.24415 0.95739 1.02007 1.00084 1.21980 0.95374 0.96355 1.00443 1.20550 0.93855 0.94349 1.02716 1.20770 0.99945 0.94179 1.02127 1.22836 0.94034 0.97872 0.98487 1.20889 0.99099 0.98511 0.97319 1.20506 0.79988 0.83632 0.85571 1.90670 1.66530 1.26884 1.58087 1.47897 1.42994 1.12491 1.29812 1.21808 1.03622 0.85466 0.96054 1.22595 0.89557 1.00318 0.86260 1.24316 1.02044 0.96630 0.98652 1.21342 0.88823 0.89578 0.94598 1.42344 1.55516 1.27909 1.08979 1.19270 1.22737 1.07456 0.88090 0.91058 1.24760 1.00692 0.98374 0.97019 1.69640 1.42826 1.21270 1.24412 0.86253 0.79086 0.78067 0.82694 1.21190 1.21684 1.21214 1.23923 0.94707 1.00940 1.00712 0.88171 0.88140 0.86527 0.91312 0.91872 0.91656 0.86242 0.88099 0.87992 0.92471 0.89971 0.91317 0.86935 0.89891 0.92203 0.90296 0.78128 0.93393 0.91798 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 14.07 28.88 0.41 -0.99 16 2 C -0.12 -1.07 9.20 -37.83 -0.35 -1.42 16 3 C -0.11 -1.10 5.98 -102.87 -0.61 -1.72 16 4 C -0.11 -0.91 9.38 36.01 0.34 -0.57 16 5 C -0.11 -1.20 8.43 -36.16 -0.30 -1.51 16 6 C -0.12 -1.19 4.48 -29.04 -0.13 -1.32 16 7 C 0.51 7.22 7.67 -10.98 -0.08 7.13 16 8 O -0.54 -9.62 15.52 5.56 0.09 -9.54 16 9 N -0.60 -8.19 3.08 -173.00 -0.53 -8.72 16 10 C 0.07 0.79 8.85 59.85 0.53 1.32 16 11 C 0.12 1.82 4.21 -67.12 -0.28 1.54 16 12 C -0.17 -2.98 7.31 -25.92 -0.19 -3.17 16 13 C 0.17 3.32 4.48 -67.12 -0.30 3.02 16 14 N -0.71 -17.40 5.40 -52.63 -0.28 -17.69 16 15 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 16 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 19 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.16 -2.72 7.37 -25.92 -0.19 -2.91 16 24 H 0.10 0.62 8.06 -52.48 -0.42 0.20 16 25 H 0.10 0.68 6.31 -52.49 -0.33 0.35 16 26 H 0.12 0.89 6.00 -52.48 -0.31 0.58 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.42 6.67 -51.93 -0.35 0.08 16 29 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 30 H 0.12 1.31 8.04 -52.48 -0.42 0.89 16 31 H 0.10 0.86 5.38 -51.93 -0.28 0.58 16 32 H 0.10 0.82 7.40 -51.93 -0.38 0.43 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.98 6.34 -51.93 -0.33 0.66 16 35 H 0.07 0.55 6.43 -51.93 -0.33 0.21 16 36 H 0.11 1.88 7.23 -51.93 -0.38 1.50 16 37 H 0.08 1.44 6.72 -51.93 -0.35 1.09 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 40 H 0.38 9.92 7.92 -40.82 -0.32 9.59 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.35 6.90 -51.93 -0.36 0.99 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -31.88 349.08 -7.83 -39.71 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.65 Total: 8.70 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.42 Total: -7.89 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.09 Total: -53.38 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.88 -7.83 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333102937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.515 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds