Wall clock time and date at job start Mon Mar 30 2020 23:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47112 * 120.00168 * 2 1 4 4 C 1.50700 * 119.99976 * 5.49566 * 3 2 1 5 5 C 1.32869 * 120.00008 * 185.50036 * 3 2 1 6 6 C 1.50696 * 120.00031 * 6.24643 * 5 3 2 7 7 C 1.50701 * 109.46875 * 126.12831 * 6 5 3 8 8 O 1.21271 * 120.00505 * 359.97438 * 7 6 5 9 9 N 1.34788 * 119.99662 * 179.72659 * 7 6 5 10 10 C 1.46501 * 120.00102 * 0.27229 * 9 7 6 11 11 C 1.46496 * 119.99726 * 180.27254 * 9 7 6 12 12 C 1.53779 * 113.61308 * 217.49501 * 11 9 7 13 13 C 1.53783 * 87.08113 * 220.02122 * 12 11 9 14 14 N 1.46503 * 113.69012 * 139.99419 * 13 12 11 15 15 C 1.36935 * 119.99912 * 107.46631 * 14 13 12 16 16 H 1.08004 * 120.00265 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99840 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00135 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00009 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47156 * 60.00444 * 19 17 15 21 21 H 1.48503 * 109.47025 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46964 * 300.00165 * 19 17 15 23 23 C 1.53780 * 87.08290 * 25.43352 * 13 12 11 24 24 H 1.08003 * 120.00464 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99884 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99686 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47462 * 270.00234 * 4 3 2 28 28 H 1.08997 * 109.47174 * 29.99951 * 4 3 2 29 29 H 1.08997 * 109.47001 * 149.99995 * 4 3 2 30 30 H 1.08006 * 120.00045 * 186.25146 * 5 3 2 31 31 H 1.09000 * 109.47343 * 6.12889 * 6 5 3 32 32 H 1.08996 * 109.47194 * 246.12547 * 6 5 3 33 33 H 1.08996 * 109.47058 * 89.99733 * 10 9 7 34 34 H 1.08992 * 109.46820 * 210.00161 * 10 9 7 35 35 H 1.09002 * 109.47038 * 330.00144 * 10 9 7 36 36 H 1.09002 * 112.85190 * 348.80346 * 11 9 7 37 37 H 1.09000 * 113.61754 * 334.56690 * 12 11 9 38 38 H 1.09002 * 113.61083 * 105.47506 * 12 11 9 39 39 H 1.09001 * 113.61560 * 270.88340 * 13 12 11 40 40 H 0.97001 * 119.99750 * 287.46156 * 14 13 12 41 41 H 0.96998 * 120.00628 * 179.97438 * 18 17 15 42 42 H 1.08993 * 113.61508 * 220.02112 * 23 13 12 43 43 H 1.09004 * 113.61628 * 89.11299 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5761 0.1250 5 6 3.3884 1.2766 -0.1103 6 6 4.1249 -0.0109 -0.3764 7 6 5.0035 0.1545 -1.5895 8 8 5.0288 1.2133 -2.1802 9 7 5.7651 -0.8730 -2.0151 10 6 5.7342 -2.1523 -1.3020 11 6 6.6237 -0.7103 -3.1909 12 6 6.6952 -1.9633 -4.0795 13 6 8.1941 -1.6629 -4.2470 14 7 9.0409 -2.8581 -4.2177 15 6 9.6202 -3.3151 -5.3712 16 1 9.4533 -2.7943 -6.3025 17 6 10.4230 -4.4472 -5.3434 18 7 10.6269 -5.0816 -4.2084 19 14 11.2128 -5.0711 -6.9171 20 1 12.0969 -4.0183 -7.4784 21 1 12.0147 -6.2853 -6.6207 22 1 10.1541 -5.4061 -7.9031 23 6 8.1175 -0.9290 -2.8978 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8687 -0.9354 -0.0004 27 1 1.0503 2.9393 -0.8678 28 1 0.4093 2.4195 0.7092 29 1 1.9472 3.3114 0.6240 30 1 3.9369 2.2015 -0.0092 31 1 3.4060 -0.8106 -0.5547 32 1 4.7410 -0.2621 0.4869 33 1 4.9589 -2.7880 -1.7296 34 1 6.7017 -2.6449 -1.3974 35 1 5.5187 -1.9757 -0.2481 36 1 6.4167 0.2067 -3.7426 37 1 6.4931 -2.8908 -3.5437 38 1 6.1262 -1.8753 -5.0050 39 1 8.4166 -1.0071 -5.0887 40 1 9.1912 -3.3256 -3.3812 41 1 11.1875 -5.8729 -4.1889 42 1 8.6965 -0.0060 -2.8693 43 1 8.3041 -1.5736 -2.0388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333102937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:28 Heat of formation + Delta-G solvation = 12.986116 kcal Electronic energy + Delta-G solvation = -21130.335085 eV Core-core repulsion = 17983.687047 eV Total energy + Delta-G solvation = -3146.648038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35248 -39.51567 -37.74885 -36.17646 -34.88637 -32.89030 -31.90755 -30.74093 -27.97476 -27.04945 -26.51689 -25.94231 -23.78153 -22.63299 -20.77103 -20.07136 -19.04249 -18.48043 -18.20439 -17.39218 -16.95263 -16.45027 -16.25728 -15.88079 -15.56422 -14.95256 -14.91543 -14.42404 -14.14288 -14.06287 -13.54923 -13.44740 -13.31356 -13.24974 -13.13613 -13.05373 -12.90825 -12.73666 -12.42986 -12.27165 -12.15455 -11.98644 -11.68614 -11.52535 -11.40455 -11.31156 -10.88120 -10.77748 -9.58064 -9.11352 -8.99450 -7.94922 -5.23173 0.45058 1.48428 1.50631 1.56687 1.62018 1.96545 2.26392 2.57277 3.36525 3.60481 3.74546 3.79118 3.83517 3.94515 4.01231 4.16085 4.23838 4.27669 4.31729 4.42009 4.57208 4.65510 4.68450 4.74826 4.79398 4.81099 4.84621 4.87678 4.95159 4.98737 5.09449 5.13070 5.15851 5.43147 5.50370 5.52091 5.58581 5.66983 5.83373 6.05325 6.27054 6.47399 7.18191 7.33872 8.08485 8.33055 9.27918 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042483 B = 0.002775 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.924260 B =10086.499796 C =10286.926898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.147 4.147 3 C -0.110 4.110 4 C -0.117 4.117 5 C -0.141 4.141 6 C -0.107 4.107 7 C 0.510 3.490 8 O -0.587 6.587 9 N -0.601 5.601 10 C 0.068 3.932 11 C 0.130 3.870 12 C -0.160 4.160 13 C 0.152 3.848 14 N -0.722 5.722 15 C -0.246 4.246 16 H 0.075 0.925 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.278 1.278 23 C -0.149 4.149 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.376 0.624 41 H 0.252 0.748 42 H 0.066 0.934 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.315 9.648 11.972 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.110 4.110 4 C -0.174 4.174 5 C -0.159 4.159 6 C -0.146 4.146 7 C 0.300 3.700 8 O -0.468 6.468 9 N -0.332 5.332 10 C -0.074 4.074 11 C 0.026 3.974 12 C -0.202 4.202 13 C 0.042 3.958 14 N -0.360 5.360 15 C -0.378 4.378 16 H 0.093 0.907 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.800 3.200 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.205 1.205 23 C -0.189 4.189 24 H 0.133 0.867 25 H 0.124 0.876 26 H 0.145 0.855 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.227 10.158 11.482 24.591 hybrid contribution 0.911 -0.670 -0.674 1.317 sum -18.316 9.488 10.808 23.288 Atomic orbital electron populations 1.24667 0.95500 1.03085 0.97728 1.22111 0.95946 0.96255 1.02169 1.20830 0.93764 0.95455 1.00956 1.20836 1.00530 0.93723 1.02299 1.22802 0.94530 0.97776 1.00808 1.20875 0.98884 0.98880 0.95922 1.21253 0.79791 0.82748 0.86186 1.90648 1.67931 1.28588 1.59637 1.47951 1.42406 1.13669 1.29161 1.22030 1.03348 0.84098 0.97890 1.22215 0.89290 0.99009 0.86931 1.24080 0.99614 0.97346 0.99132 1.21620 0.89593 0.88398 0.96204 1.42468 1.56417 1.29268 1.07810 1.19645 1.21926 1.07120 0.89105 0.90696 1.25528 1.02019 0.99087 0.99918 1.69785 1.44002 1.21736 1.26269 0.85249 0.78180 0.77218 0.79331 1.20553 1.22155 1.20465 1.23765 0.95674 1.00516 0.98992 0.86655 0.87590 0.85526 0.91526 0.90412 0.91380 0.87588 0.86196 0.85616 0.91289 0.91296 0.87927 0.87893 0.89916 0.92022 0.90663 0.79187 0.93963 0.91503 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 14.07 66.64 0.94 -1.17 16 2 C -0.15 -2.19 9.20 23.42 0.22 -1.97 16 3 C -0.11 -1.94 5.98 -18.71 -0.11 -2.06 16 4 C -0.12 -1.72 9.38 71.24 0.67 -1.05 16 5 C -0.14 -2.82 8.43 24.51 0.21 -2.61 16 6 C -0.11 -1.90 4.48 29.10 0.13 -1.77 16 7 C 0.51 13.65 7.67 87.66 0.67 14.32 16 8 O -0.59 -20.73 15.52 -3.00 -0.05 -20.78 16 9 N -0.60 -15.48 3.08 -819.64 -2.53 -18.01 16 10 C 0.07 1.31 8.85 127.77 1.13 2.44 16 11 C 0.13 3.99 4.21 45.52 0.19 4.18 16 12 C -0.16 -5.37 7.31 31.12 0.23 -5.15 16 13 C 0.15 5.96 4.48 45.52 0.20 6.16 16 14 N -0.72 -35.65 5.40 -320.44 -1.73 -37.38 16 15 C -0.25 -13.51 9.97 84.03 0.84 -12.67 16 16 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 17 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 18 N -0.97 -58.10 13.06 21.65 0.28 -57.82 16 19 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 C -0.15 -4.93 7.37 31.12 0.23 -4.70 16 24 H 0.12 1.05 8.06 -2.91 -0.02 1.03 16 25 H 0.11 1.15 6.31 -2.91 -0.02 1.13 16 26 H 0.13 1.55 6.00 -2.91 -0.02 1.54 16 27 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 0.88 6.67 -2.39 -0.02 0.87 16 29 H 0.07 0.94 8.06 -2.39 -0.02 0.92 16 30 H 0.11 2.35 8.04 -2.91 -0.02 2.33 16 31 H 0.12 1.68 5.38 -2.39 -0.01 1.67 16 32 H 0.13 1.61 7.40 -2.39 -0.02 1.59 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.54 6.34 -2.39 -0.02 1.53 16 35 H 0.10 1.27 6.43 -2.39 -0.02 1.25 16 36 H 0.10 3.42 7.23 -2.39 -0.02 3.40 16 37 H 0.08 2.80 6.72 -2.39 -0.02 2.79 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 40 H 0.38 19.65 7.92 -92.71 -0.73 18.91 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.08 2.73 6.90 -2.38 -0.02 2.72 16 Total: -1.00 -68.72 349.08 4.28 -64.44 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.27 Total: 31.56 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 6.01 Total: -9.73 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -3.98 Total: -113.20 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.78 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -68.72 4.28 -64.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333102937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.428 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds