Wall clock time and date at job start Tue Mar 31 2020 00:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47658 * 2 1 4 4 C 1.52998 * 109.47658 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47265 * 180.02562 * 4 3 2 6 6 C 1.42905 * 113.99785 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46735 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46626 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46998 * 179.97438 * 8 7 6 10 10 C 1.38818 * 120.00409 * 179.97438 * 9 8 7 11 11 C 1.39800 * 119.58213 * 359.97438 * 10 9 8 12 12 C 1.38591 * 119.49462 * 179.97438 * 11 10 9 13 13 C 1.38388 * 118.68033 * 0.02562 * 12 11 10 14 14 C 1.40560 * 119.14925 * 359.97438 * 13 12 11 15 15 C 1.41315 * 119.78847 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99580 * 0.02562 * 15 14 13 17 17 C 1.40022 * 120.00281 * 179.97438 * 15 14 13 18 18 N 1.30744 * 119.99674 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00130 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47148 * 59.99840 * 19 17 15 21 21 H 1.48496 * 109.47312 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47326 * 300.00091 * 19 17 15 23 23 N 1.31950 * 119.58965 * 179.72765 * 10 9 8 24 24 H 1.08999 * 109.47167 * 60.00040 * 1 2 3 25 25 H 1.09001 * 109.47669 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47096 * 300.00323 * 1 2 3 27 27 H 1.08997 * 109.47096 * 239.99677 * 2 1 3 28 28 H 1.09010 * 109.46475 * 120.00212 * 2 1 3 29 29 H 1.09000 * 109.46843 * 59.99261 * 3 2 1 30 30 H 1.09004 * 109.47214 * 300.00390 * 3 2 1 31 31 H 1.08997 * 109.47096 * 59.99677 * 4 3 2 32 32 H 1.09005 * 109.46515 * 299.99729 * 4 3 2 33 33 H 1.08993 * 109.47057 * 59.99308 * 6 5 4 34 34 H 1.09000 * 109.46838 * 299.99546 * 6 5 4 35 35 H 1.08993 * 109.47839 * 59.99877 * 7 6 5 36 36 H 1.09000 * 109.47160 * 299.99439 * 7 6 5 37 37 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 38 38 H 1.09001 * 109.46801 * 59.99811 * 8 7 6 39 39 H 0.97010 * 119.99910 * 359.97438 * 9 8 7 40 40 H 1.08005 * 120.25279 * 359.97438 * 11 10 9 41 41 H 1.07995 * 120.66279 * 180.02562 * 12 11 10 42 42 H 1.07993 * 120.42982 * 179.97438 * 13 12 11 43 43 H 0.97002 * 119.99757 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0464 2.7896 0.0012 6 6 5.4710 2.9024 0.0013 7 6 5.8655 4.3806 0.0013 8 6 7.3908 4.5013 0.0020 9 7 7.7687 5.9168 0.0014 10 6 9.1092 6.2774 0.0024 11 6 10.0915 5.2827 0.0046 12 6 11.4292 5.6448 0.0050 13 6 11.7531 6.9903 0.0039 14 6 10.7199 7.9432 0.0018 15 6 11.0352 9.3207 0.0011 16 1 12.0675 9.6383 0.0019 17 6 10.0095 10.2738 -0.0015 18 7 8.7599 9.8893 -0.0029 19 14 10.4264 12.0946 -0.0031 20 1 11.2211 12.4194 -1.2148 21 1 9.1722 12.8896 -0.0053 22 1 11.2175 12.4224 1.2102 23 7 9.4403 7.5547 -0.0036 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 1.6767 1.9562 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9284 -0.8891 32 1 3.9329 0.9287 0.8910 33 1 5.8737 2.4191 -0.8888 34 1 5.8737 2.4185 0.8911 35 1 5.4628 4.8643 0.8912 36 1 5.4629 4.8642 -0.8887 37 1 7.7931 4.0179 0.8923 38 1 7.7939 4.0176 -0.8877 39 1 7.0820 6.6021 0.0003 40 1 9.8100 4.2400 0.0058 41 1 12.2036 4.8920 0.0062 42 1 12.7864 7.3041 0.0046 43 1 8.0493 10.5495 -0.0051 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338233498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:13 Heat of formation + Delta-G solvation = -34.827379 kcal Electronic energy + Delta-G solvation = -20278.465480 eV Core-core repulsion = 17129.744093 eV Total energy + Delta-G solvation = -3148.721387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.51417 -38.14456 -35.86026 -35.06598 -33.40217 -31.83607 -30.29201 -29.43982 -28.31961 -25.37052 -24.76876 -23.44553 -22.02692 -21.43625 -20.90791 -20.27651 -17.36454 -16.70807 -16.62232 -16.16466 -15.55130 -15.03171 -14.76941 -14.57907 -14.45108 -14.12107 -13.60815 -13.20129 -13.11900 -12.92093 -12.55817 -12.32180 -12.02851 -11.79845 -11.60593 -11.42005 -11.23133 -11.22603 -11.04331 -11.04024 -10.97717 -10.82858 -10.58749 -10.39561 -9.90385 -9.73255 -9.44622 -8.85545 -7.87983 -7.47728 -6.48535 -6.29425 -4.44434 2.91927 3.12550 3.15172 3.26777 3.33386 3.35927 4.00959 4.28634 4.56768 4.68667 4.76238 4.86972 4.92843 4.99639 5.07730 5.19480 5.24948 5.29245 5.42056 5.46623 5.51016 5.59286 5.60541 5.74909 5.83391 5.89619 5.96197 6.06537 6.18122 6.23781 6.28667 6.60404 6.88901 6.92325 6.97063 7.07568 7.28497 7.62794 7.84404 7.94784 8.19653 8.39685 8.71891 8.83539 9.15241 10.28011 10.43755 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027949 B = 0.002454 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.595856 B =11406.944973 C =12361.583907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.061 3.939 5 O -0.390 6.390 6 C 0.068 3.932 7 C -0.129 4.129 8 C 0.146 3.854 9 N -0.739 5.739 10 C 0.411 3.589 11 C -0.368 4.368 12 C -0.032 4.032 13 C -0.317 4.317 14 C 0.292 3.708 15 C -0.435 4.435 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.716 5.716 19 Si 0.906 3.094 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.266 1.266 23 N -0.531 5.531 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.396 0.604 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 -14.717 0.009 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.015 4.015 5 O -0.309 6.309 6 C -0.009 4.009 7 C -0.167 4.167 8 C 0.020 3.980 9 N -0.376 5.376 10 C 0.171 3.829 11 C -0.394 4.394 12 C -0.057 4.057 13 C -0.340 4.340 14 C 0.165 3.835 15 C -0.467 4.467 16 H 0.101 0.899 17 C -0.154 4.154 18 N -0.338 5.338 19 Si 0.730 3.270 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.190 1.190 23 N -0.253 5.253 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.358 -14.044 0.002 19.383 hybrid contribution 0.793 0.081 0.003 0.797 sum -12.565 -13.963 0.005 18.784 Atomic orbital electron populations 1.21755 0.95415 1.01684 1.02084 1.21447 0.96257 0.96114 1.02191 1.21557 0.93594 0.97152 1.03457 1.22500 0.95025 0.83952 1.00051 1.87865 1.21420 1.26159 1.95455 1.22366 0.80844 0.97289 1.00363 1.21657 0.95837 0.95151 1.04028 1.20858 0.92400 0.84119 1.00589 1.44079 1.04553 1.04934 1.84032 1.18518 0.83827 0.90712 0.89854 1.20602 0.93238 0.96833 1.28701 1.20590 0.94589 0.95211 0.95268 1.21530 0.98601 0.93267 1.20604 1.18203 0.85677 0.93090 0.86539 1.19543 0.93999 0.89517 1.43625 0.89937 1.26054 0.94759 1.01019 0.93606 1.70144 0.99631 1.34933 1.29060 0.86430 0.78714 0.82046 0.79803 1.19024 1.20367 1.19030 1.68210 1.19915 1.12090 1.25068 0.92580 0.92646 0.92586 0.91856 0.91856 0.91103 0.91097 0.93461 0.93468 0.93108 0.93102 0.90565 0.90560 0.93039 0.93053 0.76902 0.89249 0.88961 0.88718 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.78 5.93 -26.74 -0.16 -0.94 16 3 C -0.12 -0.97 5.58 -26.74 -0.15 -1.12 16 4 C 0.06 0.57 5.94 37.16 0.22 0.79 16 5 O -0.39 -4.75 10.34 -35.23 -0.36 -5.12 16 6 C 0.07 0.78 5.94 37.16 0.22 1.00 16 7 C -0.13 -1.69 5.70 -26.73 -0.15 -1.84 16 8 C 0.15 2.30 4.88 -4.04 -0.02 2.28 16 9 N -0.74 -15.18 5.72 -60.39 -0.35 -15.53 16 10 C 0.41 10.29 7.65 -155.33 -1.19 9.10 16 11 C -0.37 -8.66 9.34 -38.87 -0.36 -9.03 16 12 C -0.03 -0.76 10.15 -39.40 -0.40 -1.16 16 13 C -0.32 -8.18 9.83 -38.65 -0.38 -8.56 16 14 C 0.29 8.30 6.55 -85.00 -0.56 7.74 16 15 C -0.43 -11.98 9.14 -37.74 -0.34 -12.32 16 16 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 17 C 0.07 1.84 5.50 -17.35 -0.10 1.75 16 18 N -0.72 -19.36 11.46 55.55 0.64 -18.72 16 19 Si 0.91 19.00 29.56 -169.99 -5.02 13.98 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 N -0.53 -15.00 7.89 -10.33 -0.08 -15.08 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 38 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 39 H 0.40 8.13 8.59 -40.82 -0.35 7.78 16 40 H 0.09 1.86 6.68 -52.48 -0.35 1.51 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -30.55 357.54 -10.20 -40.75 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.41 Total: 7.15 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.00 Total: -12.82 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.21 Total: -49.33 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.36 Total: -5.12 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.55 -10.20 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338233498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.922 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds