Wall clock time and date at job start Tue Mar 31 2020 00:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47056 * 2 1 4 4 C 1.53000 * 109.47652 * 240.00206 * 2 1 3 5 5 O 1.42901 * 109.47258 * 120.00035 * 2 1 3 6 6 C 1.42895 * 114.00139 * 60.00036 * 5 2 1 7 7 C 1.52997 * 109.47269 * 180.02562 * 6 5 2 8 8 C 1.53006 * 109.47127 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.46995 * 180.02562 * 8 7 6 10 10 C 1.38823 * 119.99845 * 180.02562 * 9 8 7 11 11 C 1.39801 * 119.58465 * 359.97438 * 10 9 8 12 12 C 1.38594 * 119.48854 * 180.02562 * 11 10 9 13 13 C 1.38384 * 118.68561 * 0.02562 * 12 11 10 14 14 C 1.40560 * 119.14720 * 359.97438 * 13 12 11 15 15 C 1.41317 * 119.78238 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99875 * 0.02562 * 15 14 13 17 17 C 1.40027 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.30747 * 119.99990 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47085 * 60.00557 * 19 17 15 21 21 H 1.48498 * 109.46905 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47149 * 300.00152 * 19 17 15 23 23 N 1.31959 * 119.58719 * 179.73222 * 10 9 8 24 24 H 1.09002 * 109.47456 * 300.00077 * 1 2 3 25 25 H 1.09004 * 109.47171 * 59.99977 * 1 2 3 26 26 H 1.09004 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47168 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47333 * 299.99762 * 3 2 1 29 29 H 1.09003 * 109.47081 * 60.00231 * 3 2 1 30 30 H 1.09004 * 109.46879 * 300.00210 * 4 2 1 31 31 H 1.09000 * 109.47228 * 59.99260 * 4 2 1 32 32 H 1.08991 * 109.47868 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47098 * 59.99755 * 6 5 2 34 34 H 1.09004 * 109.47055 * 300.00254 * 6 5 2 35 35 H 1.09001 * 109.46832 * 60.00112 * 7 6 5 36 36 H 1.08993 * 109.47194 * 299.99633 * 7 6 5 37 37 H 1.09001 * 109.46801 * 300.00272 * 8 7 6 38 38 H 1.09001 * 109.46998 * 59.99868 * 8 7 6 39 39 H 0.96998 * 120.00192 * 359.97438 * 9 8 7 40 40 H 1.07998 * 120.25204 * 359.97438 * 11 10 9 41 41 H 1.08005 * 120.65653 * 180.02562 * 12 11 10 42 42 H 1.08004 * 120.42946 * 179.97438 * 13 12 11 43 43 H 0.97000 * 120.00065 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1496 -2.6536 2.5450 8 6 1.6976 -4.1116 2.6500 9 7 2.2379 -4.7033 3.8763 10 6 1.9609 -6.0272 4.1888 11 6 1.1649 -6.7877 3.3271 12 6 0.8892 -8.1091 3.6413 13 6 1.4141 -8.6382 4.8073 14 6 2.2075 -7.8226 5.6326 15 6 2.7499 -8.3489 6.8267 16 1 2.5547 -9.3748 7.1023 17 6 3.5404 -7.5404 7.6526 18 7 3.7762 -6.2983 7.3192 19 14 4.2579 -8.2362 9.2306 20 1 5.1377 -9.3884 8.9084 21 1 5.0497 -7.1858 9.9197 22 1 3.1564 -8.6875 10.1185 23 7 2.4562 -6.5535 5.2929 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 1.9491 -2.5915 0.4007 34 1 0.4958 -2.0777 1.2907 35 1 1.7847 -2.0974 3.4085 36 1 3.2384 -2.6114 2.5192 37 1 0.6087 -4.1534 2.6759 38 1 2.0621 -4.6680 1.7864 39 1 2.7899 -4.1702 4.4697 40 1 0.7673 -6.3486 2.4241 41 1 0.2767 -8.7140 2.9889 42 1 1.2168 -9.6645 5.0797 43 1 4.3235 -5.7381 7.8914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347271414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:16 Heat of formation + Delta-G solvation = -42.815830 kcal Electronic energy + Delta-G solvation = -20975.284410 eV Core-core repulsion = 17826.216618 eV Total energy + Delta-G solvation = -3149.067792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.22043 -39.95602 -37.27434 -35.39660 -34.60247 -32.81782 -32.10158 -30.25110 -28.39935 -28.29113 -27.28429 -25.92011 -23.56099 -22.52994 -22.04323 -20.87183 -19.25412 -18.01126 -17.44260 -17.00341 -16.62615 -16.49973 -16.15400 -15.67642 -15.67503 -14.90940 -14.84181 -14.68108 -14.23023 -14.04873 -13.77246 -13.37851 -13.06709 -12.90544 -12.83026 -12.75587 -12.68128 -12.64969 -12.51621 -12.50504 -12.36517 -12.14940 -11.86594 -11.74703 -11.34840 -11.25694 -10.65668 -10.43137 -9.83479 -9.44556 -8.30558 -8.22241 -6.47707 1.07177 1.34839 1.41627 1.53890 1.59962 2.25527 2.39166 2.93096 2.94918 3.88646 3.89114 3.98565 4.06805 4.07814 4.13251 4.22743 4.39232 4.46820 4.53507 4.60736 4.66031 4.70789 4.78617 4.82261 4.86556 4.94978 4.95727 5.00129 5.01172 5.08456 5.12167 5.15790 5.20874 5.36534 5.37478 5.38683 5.71978 5.96924 6.07358 6.22921 6.36074 6.56195 6.83421 6.94604 7.21596 8.34697 8.51817 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027647 B = 0.002947 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.527084 B = 9499.868120 C =10305.424115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 C -0.137 4.137 4 C -0.177 4.177 5 O -0.399 6.399 6 C 0.068 3.932 7 C -0.117 4.117 8 C 0.147 3.853 9 N -0.736 5.736 10 C 0.392 3.608 11 C -0.367 4.367 12 C -0.030 4.030 13 C -0.344 4.344 14 C 0.257 3.743 15 C -0.472 4.472 16 H 0.087 0.913 17 C 0.024 3.976 18 N -0.753 5.753 19 Si 0.987 3.013 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.259 1.259 23 N -0.567 5.567 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.393 0.607 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 13.001 -13.676 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.057 3.943 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.320 6.320 6 C -0.009 4.009 7 C -0.155 4.155 8 C 0.023 3.977 9 N -0.372 5.372 10 C 0.152 3.848 11 C -0.393 4.393 12 C -0.054 4.054 13 C -0.367 4.367 14 C 0.130 3.870 15 C -0.504 4.504 16 H 0.105 0.895 17 C -0.197 4.197 18 N -0.375 5.375 19 Si 0.807 3.193 20 H -0.184 1.184 21 H -0.194 1.194 22 H -0.184 1.184 23 N -0.290 5.290 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.227 0.773 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.163 13.807 -13.147 19.326 hybrid contribution -0.124 -0.819 0.278 0.874 sum -3.286 12.988 -12.869 18.577 Atomic orbital electron populations 1.22427 0.94920 1.02802 1.03328 1.21752 0.93924 0.93595 0.85052 1.21790 1.01632 0.92838 1.03159 1.22426 1.01839 1.01212 0.97998 1.87924 1.75144 1.24409 1.44509 1.22303 0.98954 0.82660 0.96960 1.21503 1.01822 0.93699 0.98462 1.21043 0.97984 0.92428 0.86288 1.44297 1.58183 1.08785 1.25896 1.18987 0.89535 0.86070 0.90227 1.20966 1.16118 0.96886 1.05307 1.21024 0.95196 0.94428 0.94756 1.21705 1.12924 1.00910 1.01173 1.18697 0.88602 0.87120 0.92558 1.19922 1.27441 0.99061 1.03958 0.89460 1.26987 0.95418 0.94713 1.02602 1.70249 1.25279 1.06899 1.35053 0.85205 0.78746 0.78830 0.76506 1.18358 1.19351 1.18361 1.68178 1.29488 1.14167 1.17200 0.92363 0.89784 0.92150 0.92398 0.89075 0.92400 0.92156 0.89779 0.92365 0.91958 0.91964 0.91251 0.91249 0.92331 0.92335 0.77329 0.86199 0.85123 0.87865 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.25 71.98 0.59 -1.96 16 2 C 0.10 1.61 1.14 -10.79 -0.01 1.60 16 3 C -0.14 -1.97 8.84 71.98 0.64 -1.33 16 4 C -0.18 -2.55 8.25 71.98 0.59 -1.96 16 5 O -0.40 -9.24 9.99 -148.98 -1.49 -10.73 16 6 C 0.07 1.45 5.14 71.98 0.37 1.82 16 7 C -0.12 -2.98 5.70 30.60 0.17 -2.81 16 8 C 0.15 4.45 4.88 86.38 0.42 4.87 16 9 N -0.74 -30.29 5.72 -344.97 -1.97 -32.27 16 10 C 0.39 19.75 7.65 133.42 1.02 20.77 16 11 C -0.37 -16.80 9.34 22.73 0.21 -16.59 16 12 C -0.03 -1.37 10.15 22.39 0.23 -1.15 16 13 C -0.34 -17.94 9.83 22.87 0.22 -17.72 16 14 C 0.26 15.05 6.55 40.18 0.26 15.32 16 15 C -0.47 -26.76 9.14 23.46 0.21 -26.55 16 16 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 17 C 0.02 1.29 5.50 85.29 0.47 1.76 16 18 N -0.75 -41.78 11.46 21.84 0.25 -41.53 16 19 Si 0.99 39.40 29.56 68.60 2.03 41.43 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 21 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 23 N -0.57 -32.95 7.89 -186.58 -1.47 -34.42 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.06 0.88 6.54 -2.39 -0.02 0.86 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.88 6.54 -2.39 -0.02 0.86 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.21 6.42 -2.39 -0.02 1.19 16 34 H 0.06 1.21 6.42 -2.38 -0.02 1.19 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.71 7.92 -2.39 -0.02 1.69 16 38 H 0.06 1.71 7.92 -2.39 -0.02 1.69 16 39 H 0.39 16.49 8.59 -92.71 -0.80 15.69 16 40 H 0.12 4.65 6.68 -2.91 -0.02 4.63 16 41 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16 42 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 43 H 0.28 13.88 8.29 -92.71 -0.77 13.11 16 Total: -1.00 -67.30 348.85 2.95 -64.36 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: 0.19 Total: 37.08 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 5.41 Total: -23.91 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -3.19 Total: -108.22 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -1.49 Total: -10.73 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -67.30 2.95 -64.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347271414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.540 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds