Wall clock time and date at job start Tue Mar 31 2020 00:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46843 * 115.82282 * 3 2 1 5 5 C 1.37103 * 119.99730 * 88.56568 * 4 3 2 6 6 H 1.08002 * 120.00151 * 161.43283 * 5 4 3 7 7 C 1.38948 * 120.00287 * 341.43558 * 5 4 3 8 8 N 1.31414 * 119.99769 * 7.46965 * 7 5 4 9 9 Si 1.86801 * 120.00208 * 187.47470 * 7 5 4 10 10 H 1.48504 * 109.47170 * 89.99909 * 9 7 5 11 11 H 1.48494 * 109.47049 * 209.99824 * 9 7 5 12 12 H 1.48506 * 109.46958 * 329.99799 * 9 7 5 13 13 C 1.34770 * 120.00164 * 268.56850 * 4 3 2 14 14 O 1.21297 * 120.00021 * 184.80939 * 13 4 3 15 15 C 1.50699 * 120.00286 * 4.80241 * 13 4 3 16 16 H 1.08999 * 110.41961 * 322.90325 * 15 13 4 17 17 C 1.54912 * 110.37081 * 85.20889 * 15 13 4 18 18 C 1.55136 * 101.64928 * 155.90165 * 17 15 13 19 19 C 1.54321 * 103.02326 * 324.34678 * 18 17 15 20 20 N 1.47442 * 107.23133 * 22.28634 * 19 18 17 21 21 C 1.46900 * 111.00135 * 123.25447 * 20 19 18 22 22 C 1.53006 * 109.47075 * 69.87455 * 21 20 19 23 23 C 1.52993 * 109.46866 * 184.99850 * 22 21 20 24 24 C 1.52999 * 109.46989 * 64.99827 * 22 21 20 25 25 H 4.40637 * 5.51359 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47468 * 355.82781 * 3 2 1 27 27 H 1.08998 * 109.46880 * 235.82318 * 3 2 1 28 28 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.98923 * 37.81221 * 17 15 13 30 30 H 1.08992 * 110.98954 * 273.99380 * 17 15 13 31 31 H 1.09000 * 110.70871 * 205.96398 * 18 17 15 32 32 H 1.09004 * 110.85723 * 82.80041 * 18 17 15 33 33 H 1.08998 * 109.89128 * 262.87470 * 19 18 17 34 34 H 1.08998 * 109.88516 * 141.68721 * 19 18 17 35 35 H 1.08998 * 109.47558 * 309.87481 * 21 20 19 36 36 H 1.09004 * 109.47287 * 189.87306 * 21 20 19 37 37 H 1.08997 * 109.46731 * 304.99779 * 22 21 20 38 38 H 1.08997 * 109.47387 * 299.99527 * 23 22 21 39 39 H 1.09004 * 109.46730 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.47622 * 60.00262 * 23 22 21 41 41 H 1.08991 * 109.47294 * 180.02562 * 24 22 21 42 42 H 1.08998 * 109.47283 * 300.00407 * 24 22 21 43 43 H 1.09000 * 109.47024 * 60.00073 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6025 -1.2433 5 6 3.3339 1.9569 -1.3169 6 1 3.9597 2.3690 -2.0947 7 6 2.7313 2.7995 -0.3909 8 7 2.0919 2.2932 0.6396 9 14 2.8299 4.6519 -0.6106 10 1 1.6722 5.1172 -1.4159 11 1 2.8037 5.3103 0.7202 12 1 4.0922 5.0008 -1.3108 13 6 3.3865 -0.1751 -2.3147 14 8 3.8725 0.3095 -3.3148 15 6 3.0651 -1.6467 -2.2702 16 1 3.2718 -2.0514 -1.2795 17 6 1.5831 -1.8868 -2.6522 18 6 1.6229 -3.3538 -3.1551 19 6 2.9953 -3.4444 -3.8550 20 7 3.8421 -2.3746 -3.2960 21 6 5.0791 -2.9256 -2.7267 22 6 5.9780 -3.4339 -3.8557 23 6 7.2085 -4.1194 -3.2585 24 6 6.4220 -2.2550 -4.7240 25 1 -1.0501 0.0001 0.0003 26 1 3.0099 -1.0240 0.0748 27 1 3.0091 0.5781 0.8502 28 1 1.6715 2.8814 1.2863 29 1 1.2702 -1.2099 -3.4472 30 1 0.9349 -1.7900 -1.7814 31 1 0.8160 -3.5404 -3.8637 32 1 1.5695 -4.0521 -2.3198 33 1 2.8745 -3.2990 -4.9285 34 1 3.4481 -4.4163 -3.6588 35 1 4.8351 -3.7505 -2.0572 36 1 5.6007 -2.1475 -2.1693 37 1 5.4253 -4.1474 -4.4668 38 1 7.7612 -3.4059 -2.6474 39 1 7.8486 -4.4819 -4.0628 40 1 6.8922 -4.9593 -2.6399 41 1 7.0620 -2.6171 -5.5286 42 1 5.5454 -1.7666 -5.1494 43 1 6.9747 -1.5415 -4.1128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358227148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:45 Heat of formation + Delta-G solvation = 38.192880 kcal Electronic energy + Delta-G solvation = -22949.781044 eV Core-core repulsion = 19804.226053 eV Total energy + Delta-G solvation = -3145.554991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.59003 -37.65052 -35.36699 -34.98214 -31.99849 -31.19053 -30.77361 -28.99474 -26.85453 -26.42111 -25.16645 -24.48802 -21.65354 -21.25830 -19.27936 -18.57702 -17.79650 -16.81296 -16.45962 -15.75431 -15.09278 -14.56357 -14.35098 -14.06215 -13.88932 -13.66453 -13.08064 -12.85375 -12.80384 -12.43668 -12.31730 -12.06277 -11.99458 -11.63230 -11.39689 -11.16263 -11.12333 -11.00040 -10.87149 -10.67749 -10.48686 -10.47039 -10.41078 -10.27001 -10.22681 -9.45915 -9.18519 -8.68715 -8.39656 -7.82601 -7.70970 -6.20220 -3.83626 3.19716 3.28364 3.32463 3.76946 3.83829 4.10857 4.16127 4.32959 4.83780 4.96965 5.09000 5.11080 5.13818 5.20985 5.26227 5.43804 5.48335 5.60636 5.61484 5.77733 5.79344 5.85283 5.88255 5.98537 6.02490 6.06156 6.11943 6.14577 6.25986 6.33414 6.37643 6.39940 6.56002 6.58029 6.83454 7.03027 7.19157 7.28990 7.45741 7.60196 8.14907 8.54385 8.85191 9.22358 9.43742 10.01771 10.73600 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.005848 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.245012 B = 4786.724063 C = 5614.955776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.093 4.093 3 C 0.224 3.776 4 N -0.452 5.452 5 C -0.299 4.299 6 H 0.102 0.898 7 C 0.029 3.971 8 N -0.882 5.882 9 Si 0.927 3.073 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.468 3.532 14 O -0.558 6.558 15 C 0.063 3.937 16 H 0.062 0.938 17 C -0.113 4.113 18 C -0.141 4.141 19 C 0.046 3.954 20 N -0.501 5.501 21 C 0.059 3.941 22 C -0.088 4.088 23 C -0.146 4.146 24 C -0.136 4.136 25 H 0.196 0.804 26 H 0.049 0.951 27 H 0.135 0.865 28 H 0.266 0.734 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -12.418 -2.301 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.095 4.095 3 C 0.100 3.900 4 N -0.172 5.172 5 C -0.427 4.427 6 H 0.120 0.880 7 C -0.173 4.173 8 N -0.523 5.523 9 Si 0.755 3.245 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.255 3.745 14 O -0.438 6.438 15 C -0.049 4.049 16 H 0.080 0.920 17 C -0.151 4.151 18 C -0.180 4.180 19 C -0.082 4.082 20 N -0.225 5.225 21 C -0.070 4.070 22 C -0.107 4.107 23 C -0.204 4.204 24 C -0.193 4.193 25 H 0.214 0.786 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.092 0.908 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.157 -11.710 -3.043 12.290 hybrid contribution -0.678 0.418 0.850 1.164 sum 1.479 -11.292 -2.193 11.598 Atomic orbital electron populations 1.24231 0.95360 1.07253 1.03560 1.23326 0.94387 0.94568 0.97217 1.18705 0.84166 0.95577 0.91502 1.43693 1.57685 1.07039 1.08791 1.19694 1.28102 0.80322 1.14550 0.87978 1.25287 0.95790 1.00470 0.95718 1.69892 1.35670 1.34703 1.12048 0.85902 0.78824 0.82427 0.77390 1.20525 1.21069 1.19535 1.19768 0.84022 0.87093 0.83617 1.90515 1.46667 1.74780 1.31875 1.22486 0.93745 0.94645 0.94010 0.92049 1.22613 0.94696 0.95718 1.02076 1.22794 0.97857 0.97165 1.00160 1.22826 0.92217 0.93161 1.00022 1.63094 1.04280 1.22996 1.32115 1.22329 0.91418 0.97734 0.95497 1.21074 0.95383 0.97588 0.96659 1.21831 0.97847 1.00106 1.00636 1.21683 1.01725 0.97296 0.98599 0.78642 0.93315 0.84783 0.92251 0.90453 0.89992 0.90940 0.91746 0.90779 0.93061 0.95381 0.90875 0.91670 0.92616 0.92782 0.93198 0.94200 0.90793 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -5.85 18.79 29.55 0.56 -5.29 16 2 C -0.09 -2.07 10.01 -37.12 -0.37 -2.44 16 3 C 0.22 5.01 4.98 -6.83 -0.03 4.98 16 4 N -0.45 -11.40 2.59 -117.93 -0.30 -11.70 16 5 C -0.30 -8.24 9.41 -14.93 -0.14 -8.38 16 6 H 0.10 2.97 7.30 -52.49 -0.38 2.58 16 7 C 0.03 0.75 5.40 -17.47 -0.09 0.65 16 8 N -0.88 -22.81 8.30 55.50 0.46 -22.34 16 9 Si 0.93 21.03 29.56 -169.99 -5.02 16.01 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 13 C 0.47 11.38 6.89 -10.99 -0.08 11.31 16 14 O -0.56 -15.50 16.26 5.54 0.09 -15.41 16 15 C 0.06 1.20 2.09 -67.34 -0.14 1.06 16 16 H 0.06 1.11 5.80 -51.93 -0.30 0.81 16 17 C -0.11 -1.95 6.28 -24.59 -0.15 -2.10 16 18 C -0.14 -1.90 6.94 -24.91 -0.17 -2.07 16 19 C 0.05 0.64 6.13 -2.83 -0.02 0.63 16 20 N -0.50 -8.66 3.88 -224.75 -0.87 -9.53 16 21 C 0.06 0.89 3.93 -3.82 -0.01 0.88 16 22 C -0.09 -1.16 2.89 -90.62 -0.26 -1.42 16 23 C -0.15 -1.60 9.19 37.15 0.34 -1.26 16 24 C -0.14 -2.00 9.08 37.16 0.34 -1.67 16 25 H 0.20 3.30 7.80 -54.09 -0.42 2.88 16 26 H 0.05 0.94 5.92 -51.93 -0.31 0.64 16 27 H 0.13 3.23 6.06 -51.93 -0.31 2.91 16 28 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 30 H 0.08 1.42 6.25 -51.93 -0.32 1.10 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.63 6.94 -51.93 -0.36 0.27 16 35 H 0.03 0.39 7.96 -51.93 -0.41 -0.03 16 36 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 37 H 0.06 0.82 7.05 -51.93 -0.37 0.45 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.29 7.75 -51.93 -0.40 0.88 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -29.97 342.33 -7.68 -37.65 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.95 Total: 5.32 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.24 Total: -5.15 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.72 Total: -43.58 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.09 Total: -15.41 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.97 -7.68 -37.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358227148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.844 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds