Wall clock time and date at job start Tue Mar 31 2020 00:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46843 * 115.82282 * 3 2 1 5 5 C 1.37103 * 119.99730 * 88.56568 * 4 3 2 6 6 H 1.08002 * 120.00151 * 161.43283 * 5 4 3 7 7 C 1.38948 * 120.00287 * 341.43558 * 5 4 3 8 8 N 1.31414 * 119.99769 * 7.46965 * 7 5 4 9 9 Si 1.86801 * 120.00208 * 187.47470 * 7 5 4 10 10 H 1.48504 * 109.47170 * 89.99909 * 9 7 5 11 11 H 1.48494 * 109.47049 * 209.99824 * 9 7 5 12 12 H 1.48506 * 109.46958 * 329.99799 * 9 7 5 13 13 C 1.34770 * 120.00164 * 268.56850 * 4 3 2 14 14 O 1.21297 * 120.00021 * 184.80939 * 13 4 3 15 15 C 1.50699 * 120.00286 * 4.80241 * 13 4 3 16 16 H 1.08999 * 110.41961 * 322.90325 * 15 13 4 17 17 C 1.54912 * 110.37081 * 85.20889 * 15 13 4 18 18 C 1.55136 * 101.64928 * 155.90165 * 17 15 13 19 19 C 1.54321 * 103.02326 * 324.34678 * 18 17 15 20 20 N 1.47442 * 107.23133 * 22.28634 * 19 18 17 21 21 C 1.46900 * 111.00135 * 123.25447 * 20 19 18 22 22 C 1.53006 * 109.47075 * 69.87455 * 21 20 19 23 23 C 1.52993 * 109.46866 * 184.99850 * 22 21 20 24 24 C 1.52999 * 109.46989 * 64.99827 * 22 21 20 25 25 H 4.40637 * 5.51359 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47468 * 355.82781 * 3 2 1 27 27 H 1.08998 * 109.46880 * 235.82318 * 3 2 1 28 28 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.98923 * 37.81221 * 17 15 13 30 30 H 1.08992 * 110.98954 * 273.99380 * 17 15 13 31 31 H 1.09000 * 110.70871 * 205.96398 * 18 17 15 32 32 H 1.09004 * 110.85723 * 82.80041 * 18 17 15 33 33 H 1.08998 * 109.89128 * 262.87470 * 19 18 17 34 34 H 1.08998 * 109.88516 * 141.68721 * 19 18 17 35 35 H 1.08998 * 109.47558 * 309.87481 * 21 20 19 36 36 H 1.09004 * 109.47287 * 189.87306 * 21 20 19 37 37 H 1.08997 * 109.46731 * 304.99779 * 22 21 20 38 38 H 1.08997 * 109.47387 * 299.99527 * 23 22 21 39 39 H 1.09004 * 109.46730 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.47622 * 60.00262 * 23 22 21 41 41 H 1.08991 * 109.47294 * 180.02562 * 24 22 21 42 42 H 1.08998 * 109.47283 * 300.00407 * 24 22 21 43 43 H 1.09000 * 109.47024 * 60.00073 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6025 -1.2433 5 6 3.3339 1.9569 -1.3169 6 1 3.9597 2.3690 -2.0947 7 6 2.7313 2.7995 -0.3909 8 7 2.0919 2.2932 0.6396 9 14 2.8299 4.6519 -0.6106 10 1 1.6722 5.1172 -1.4159 11 1 2.8037 5.3103 0.7202 12 1 4.0922 5.0008 -1.3108 13 6 3.3865 -0.1751 -2.3147 14 8 3.8725 0.3095 -3.3148 15 6 3.0651 -1.6467 -2.2702 16 1 3.2718 -2.0514 -1.2795 17 6 1.5831 -1.8868 -2.6522 18 6 1.6229 -3.3538 -3.1551 19 6 2.9953 -3.4444 -3.8550 20 7 3.8421 -2.3746 -3.2960 21 6 5.0791 -2.9256 -2.7267 22 6 5.9780 -3.4339 -3.8557 23 6 7.2085 -4.1194 -3.2585 24 6 6.4220 -2.2550 -4.7240 25 1 -1.0501 0.0001 0.0003 26 1 3.0099 -1.0240 0.0748 27 1 3.0091 0.5781 0.8502 28 1 1.6715 2.8814 1.2863 29 1 1.2702 -1.2099 -3.4472 30 1 0.9349 -1.7900 -1.7814 31 1 0.8160 -3.5404 -3.8637 32 1 1.5695 -4.0521 -2.3198 33 1 2.8745 -3.2990 -4.9285 34 1 3.4481 -4.4163 -3.6588 35 1 4.8351 -3.7505 -2.0572 36 1 5.6007 -2.1475 -2.1693 37 1 5.4253 -4.1474 -4.4668 38 1 7.7612 -3.4059 -2.6474 39 1 7.8486 -4.4819 -4.0628 40 1 6.8922 -4.9593 -2.6399 41 1 7.0620 -2.6171 -5.5286 42 1 5.5454 -1.7666 -5.1494 43 1 6.9747 -1.5415 -4.1128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358227148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:44 Heat of formation + Delta-G solvation = 20.845670 kcal Electronic energy + Delta-G solvation = -22950.533275 eV Core-core repulsion = 19804.226053 eV Total energy + Delta-G solvation = -3146.307222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13981 -39.24897 -36.97284 -36.47566 -33.89309 -33.02411 -31.97683 -30.44030 -28.23710 -27.92054 -26.55344 -26.16774 -23.22655 -22.41189 -20.48386 -20.18725 -19.63940 -18.44886 -18.25923 -17.09224 -16.74144 -16.05666 -15.89697 -15.59342 -15.49363 -15.04414 -14.45516 -14.30441 -14.13054 -14.06114 -13.73620 -13.66731 -13.15435 -13.10363 -12.98482 -12.73299 -12.62673 -12.46062 -12.34338 -12.12983 -12.09733 -11.78740 -11.63022 -11.56406 -11.40862 -11.31960 -10.94959 -10.48302 -10.22233 -9.79328 -9.08144 -8.19844 -5.91962 1.35684 1.39802 1.50485 1.98279 2.10173 2.33547 2.44804 2.84352 3.09406 3.42343 3.69044 3.79722 3.87766 3.98150 3.99993 4.14248 4.18312 4.30643 4.34497 4.57477 4.59045 4.71080 4.72977 4.79491 4.86373 4.86915 4.95127 4.96427 5.07698 5.10272 5.14624 5.24241 5.27899 5.33201 5.46542 5.49026 5.50924 5.58668 5.92967 6.18198 6.27763 6.56044 7.17444 7.21200 7.49052 8.08405 8.69458 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.005848 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.245012 B = 4786.724063 C = 5614.955776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.134 4.134 3 C 0.229 3.771 4 N -0.462 5.462 5 C -0.338 4.338 6 H 0.071 0.929 7 C 0.002 3.998 8 N -0.882 5.882 9 Si 0.983 3.017 10 H -0.281 1.281 11 H -0.268 1.268 12 H -0.276 1.276 13 C 0.457 3.543 14 O -0.608 6.608 15 C 0.073 3.927 16 H 0.073 0.927 17 C -0.111 4.111 18 C -0.127 4.127 19 C 0.045 3.955 20 N -0.527 5.527 21 C 0.059 3.941 22 C -0.082 4.082 23 C -0.141 4.141 24 C -0.131 4.131 25 H 0.231 0.769 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.270 0.730 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 -14.693 -1.767 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.136 4.136 3 C 0.106 3.894 4 N -0.182 5.182 5 C -0.466 4.466 6 H 0.089 0.911 7 C -0.199 4.199 8 N -0.521 5.521 9 Si 0.808 3.192 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.201 1.201 13 C 0.246 3.754 14 O -0.492 6.492 15 C -0.039 4.039 16 H 0.091 0.909 17 C -0.150 4.150 18 C -0.165 4.165 19 C -0.082 4.082 20 N -0.252 5.252 21 C -0.069 4.069 22 C -0.101 4.101 23 C -0.199 4.199 24 C -0.189 4.189 25 H 0.248 0.752 26 H 0.095 0.905 27 H 0.132 0.868 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.107 -14.016 -2.470 14.275 hybrid contribution -0.369 1.156 0.681 1.392 sum 0.738 -12.860 -1.789 13.005 Atomic orbital electron populations 1.25067 0.96244 1.05292 1.01565 1.23426 0.94795 0.96325 0.99014 1.18611 0.84904 0.96418 0.89425 1.43887 1.57670 1.06572 1.10088 1.19553 1.29786 0.82193 1.15021 0.91114 1.25897 0.95088 1.03807 0.95093 1.70028 1.34782 1.35659 1.11665 0.85081 0.78272 0.78025 0.77818 1.20660 1.19277 1.20052 1.20775 0.82593 0.89399 0.82635 1.90465 1.48742 1.76340 1.33643 1.22295 0.95274 0.91032 0.95277 0.90896 1.22558 0.93094 0.98110 1.01195 1.22776 0.98090 0.94365 1.01230 1.22904 0.92264 0.93295 0.99737 1.62963 1.05322 1.24903 1.31974 1.22365 0.90741 0.97364 0.96423 1.21066 0.96167 0.97000 0.95868 1.21785 0.96766 1.00145 1.01164 1.21619 1.00394 0.97620 0.99219 0.75216 0.90526 0.86843 0.91976 0.93397 0.89955 0.88895 0.89376 0.91026 0.90207 0.93011 0.93951 0.90084 0.93527 0.91275 0.91478 0.91932 0.94076 0.95226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.27 18.79 74.32 1.40 -8.88 16 2 C -0.13 -5.86 10.01 31.13 0.31 -5.55 16 3 C 0.23 10.39 4.98 84.57 0.42 10.81 16 4 N -0.46 -24.30 2.59 -645.42 -1.67 -25.97 16 5 C -0.34 -19.52 9.41 84.04 0.79 -18.73 16 6 H 0.07 4.42 7.30 -2.91 -0.02 4.40 16 7 C 0.00 0.12 5.40 84.93 0.46 0.58 16 8 N -0.88 -45.68 8.30 21.66 0.18 -45.50 16 9 Si 0.98 43.73 29.56 68.60 2.03 45.76 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 C 0.46 23.27 6.89 87.66 0.60 23.87 16 14 O -0.61 -36.05 16.26 -3.08 -0.05 -36.10 16 15 C 0.07 2.79 2.09 44.64 0.09 2.88 16 16 H 0.07 2.58 5.80 -2.39 -0.01 2.57 16 17 C -0.11 -3.75 6.28 31.98 0.20 -3.55 16 18 C -0.13 -3.00 6.94 31.77 0.22 -2.78 16 19 C 0.05 1.15 6.13 86.65 0.53 1.68 16 20 N -0.53 -18.01 3.88 -864.96 -3.35 -21.36 16 21 C 0.06 1.74 3.93 86.31 0.34 2.08 16 22 C -0.08 -2.04 2.89 -10.79 -0.03 -2.07 16 23 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 24 C -0.13 -3.93 9.08 71.98 0.65 -3.27 16 25 H 0.23 6.96 7.80 -4.42 -0.03 6.93 16 26 H 0.08 2.96 5.92 -2.39 -0.01 2.94 16 27 H 0.11 5.59 6.06 -2.39 -0.01 5.58 16 28 H 0.27 13.32 8.31 -92.70 -0.77 12.55 16 29 H 0.05 1.88 8.05 -2.39 -0.02 1.86 16 30 H 0.08 2.74 6.25 -2.39 -0.01 2.73 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.61 6.94 -2.39 -0.02 1.59 16 35 H 0.05 1.28 7.96 -2.39 -0.02 1.26 16 36 H 0.04 1.49 8.07 -2.38 -0.02 1.47 16 37 H 0.08 1.78 7.05 -2.39 -0.02 1.77 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.15 8.14 -2.38 -0.02 1.14 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.04 1.48 7.75 -2.39 -0.02 1.47 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -68.69 342.33 4.76 -63.93 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.97 Total: 24.24 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 6.65 Total: -5.00 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -4.84 Total: -92.83 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.05 Total: -36.10 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.69 4.76 -63.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358227148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.774 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds