Wall clock time and date at job start Tue Mar 31 2020 00:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32983 * 120.00524 * 2 1 4 4 C 1.47104 * 120.00147 * 5.98081 * 3 2 1 5 5 O 1.21615 * 119.99529 * 354.81609 * 4 3 2 6 6 N 1.34777 * 120.00589 * 174.81992 * 4 3 2 7 7 C 1.46495 * 119.99886 * 179.97438 * 6 4 3 8 8 C 1.53008 * 109.46457 * 179.97438 * 7 6 4 9 9 C 1.53793 * 113.60976 * 175.00149 * 8 7 6 10 10 C 1.53779 * 87.07800 * 140.06643 * 9 8 7 11 11 N 1.46495 * 113.61712 * 89.11452 * 10 9 8 12 12 C 1.36946 * 120.00266 * 156.52572 * 11 10 9 13 13 H 1.07994 * 119.99398 * 0.02562 * 12 11 10 14 14 C 1.38811 * 119.99986 * 180.02562 * 12 11 10 15 15 N 1.31613 * 119.99976 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99839 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46979 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47099 * 119.99668 * 16 14 12 19 19 H 1.48497 * 109.47012 * 240.00092 * 16 14 12 20 20 C 1.53785 * 87.17563 * 334.52353 * 10 9 8 21 21 C 1.50702 * 119.99464 * 179.97438 * 2 1 3 22 22 C 1.53002 * 117.50227 * 14.83961 * 21 2 1 23 23 C 1.52998 * 117.50312 * 306.17796 * 21 2 1 24 24 H 1.09003 * 109.46902 * 55.78311 * 1 2 3 25 25 H 1.09000 * 109.47602 * 175.78309 * 1 2 3 26 26 H 1.09002 * 109.47028 * 295.78532 * 1 2 3 27 27 H 1.08003 * 120.00469 * 185.98183 * 3 2 1 28 28 H 0.96998 * 119.99601 * 0.02562 * 6 4 3 29 29 H 1.08997 * 109.47278 * 60.00293 * 7 6 4 30 30 H 1.08995 * 109.47585 * 299.99738 * 7 6 4 31 31 H 1.08994 * 112.85412 * 43.81140 * 8 7 6 32 32 H 1.09001 * 113.61181 * 25.51406 * 9 8 7 33 33 H 1.08998 * 113.61030 * 254.61717 * 9 8 7 34 34 H 1.08998 * 113.61460 * 219.93516 * 10 9 8 35 35 H 0.96998 * 119.99866 * 336.53338 * 11 10 9 36 36 H 0.97004 * 119.99748 * 179.97438 * 15 14 12 37 37 H 1.08996 * 113.61129 * 140.02508 * 20 10 9 38 38 H 1.09000 * 113.61376 * 270.93115 * 20 10 9 39 39 H 1.09008 * 115.54977 * 160.50405 * 21 2 1 40 40 H 1.09002 * 117.49431 * 359.97438 * 22 21 2 41 41 H 1.09002 * 117.50139 * 145.01497 * 22 21 2 42 42 H 1.09002 * 117.49855 * 214.98022 * 23 21 2 43 43 H 1.08999 * 117.49712 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 1.4426 2.4222 0.1327 5 8 0.2266 2.4265 0.1476 6 7 2.1219 3.5815 0.2378 7 6 1.3954 4.8468 0.3694 8 6 2.3952 6.0006 0.4709 9 6 1.7337 7.3889 0.4904 10 6 2.7745 7.7830 1.5517 11 7 4.0127 8.3248 0.9865 12 6 4.8104 9.1419 1.7426 13 1 4.5268 9.3863 2.7555 14 6 5.9833 9.6557 1.2068 15 7 6.3291 9.3572 -0.0275 16 14 7.0718 10.7695 2.2384 17 1 6.4648 10.9487 3.5817 18 1 8.4161 10.1547 2.3801 19 1 7.1994 12.0910 1.5731 20 6 2.8625 6.2901 1.9100 21 6 2.2604 -1.3052 0.0006 22 6 1.4774 -2.5731 -0.3464 23 6 1.9198 -2.3171 1.0964 24 1 -0.3633 0.5779 -0.8498 25 1 -0.3634 -1.0248 -0.0756 26 1 -0.3633 0.4470 0.9254 27 1 3.2476 1.1541 -0.0975 28 1 3.0918 3.5781 0.2255 29 1 0.7793 4.8202 1.2682 30 1 0.7589 4.9928 -0.5032 31 1 3.2127 5.9166 -0.2451 32 1 0.7101 7.3795 0.8649 33 1 1.8375 7.9351 -0.4471 34 1 2.3688 8.4010 2.3526 35 1 4.2674 8.1050 0.0768 36 1 7.1486 9.7166 -0.4020 37 1 3.8770 5.9501 2.1178 38 1 2.1469 5.9810 2.6719 39 1 3.2983 -1.2490 -0.3277 40 1 0.4172 -2.4632 -0.5747 41 1 2.0003 -3.3512 -0.9026 42 1 2.7336 -2.9269 1.4890 43 1 1.1511 -2.0386 1.8173 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479753943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:05 Heat of formation + Delta-G solvation = 28.556014 kcal Electronic energy + Delta-G solvation = -20714.906315 eV Core-core repulsion = 17568.933439 eV Total energy + Delta-G solvation = -3145.972876 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.94387 -38.70273 -38.01545 -34.68665 -33.29972 -33.18641 -30.24173 -28.46411 -26.90183 -25.05245 -24.31619 -23.48615 -22.76090 -21.66728 -20.58615 -18.85073 -18.26740 -17.31500 -16.93448 -16.51242 -15.49882 -15.23258 -14.97518 -14.80113 -14.16978 -13.95883 -13.57664 -13.40391 -13.18609 -12.86412 -12.85269 -12.27393 -12.21734 -11.90522 -11.83066 -11.53489 -11.35191 -11.22051 -11.04111 -10.86347 -10.82753 -10.47480 -10.14894 -10.01120 -9.70048 -9.62403 -9.40072 -9.22600 -8.90593 -8.76001 -7.00766 -5.81949 -3.10865 1.19058 3.22920 3.30881 3.40661 3.46648 3.48752 3.59984 4.26331 4.47327 4.54828 4.55891 4.66795 4.84445 5.02701 5.08114 5.15196 5.21293 5.26445 5.41299 5.44910 5.51718 5.64489 5.67916 5.69506 5.71607 5.73369 5.87738 5.92578 5.98513 6.12146 6.22154 6.31432 6.34314 6.37755 6.50990 6.62029 6.75329 6.91512 7.04942 7.63730 7.68685 8.31983 8.37395 9.48074 10.05860 10.40056 11.40623 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.002613 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.333539 B =10713.549326 C =11281.955304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.006 4.006 3 C -0.225 4.225 4 C 0.542 3.458 5 O -0.549 6.549 6 N -0.721 5.721 7 C 0.132 3.868 8 C -0.120 4.120 9 C -0.147 4.147 10 C 0.167 3.833 11 N -0.706 5.706 12 C -0.241 4.241 13 H 0.073 0.927 14 C -0.014 4.014 15 N -0.933 5.933 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.168 4.168 21 C -0.133 4.133 22 C -0.175 4.175 23 C -0.164 4.164 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.126 0.874 28 H 0.402 0.598 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.736 -21.436 -0.279 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.008 4.008 3 C -0.246 4.246 4 C 0.332 3.668 5 O -0.430 6.430 6 N -0.371 5.371 7 C 0.009 3.991 8 C -0.138 4.138 9 C -0.187 4.187 10 C 0.055 3.945 11 N -0.345 5.345 12 C -0.372 4.372 13 H 0.091 0.909 14 C -0.210 4.210 15 N -0.581 5.581 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.209 4.209 21 C -0.151 4.151 22 C -0.212 4.212 23 C -0.201 4.201 24 H 0.103 0.897 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.144 0.856 28 H 0.236 0.764 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.495 -21.250 -0.137 23.701 hybrid contribution 1.474 0.529 0.129 1.572 sum -9.021 -20.721 -0.008 22.599 Atomic orbital electron populations 1.21081 0.90744 1.01093 1.04488 1.21752 0.96142 0.92320 0.90536 1.22329 1.00274 0.91961 1.10049 1.18498 0.87333 0.84282 0.76731 1.90757 1.13733 1.87468 1.51048 1.45968 1.10580 1.06444 1.74135 1.21442 0.94562 0.81724 1.01378 1.22758 0.98097 0.93444 0.99531 1.23419 0.98887 0.95077 1.01297 1.21057 0.87578 0.91647 0.94246 1.42181 1.20957 1.56246 1.15117 1.19338 1.00921 1.20809 0.96119 0.90938 1.24767 0.98542 1.01127 0.96536 1.69671 1.25480 1.48943 1.13996 0.86097 0.80493 0.80218 0.79266 1.20491 1.21845 1.21830 1.23924 1.00784 1.01925 0.94261 1.21284 0.99675 0.88424 1.05713 1.23130 1.01205 0.98348 0.98506 1.22990 1.03843 1.01277 0.92011 0.89747 0.92789 0.89949 0.85648 0.76355 0.91711 0.91943 0.88926 0.90459 0.91345 0.92084 0.78122 0.93495 0.91511 0.91456 0.86681 0.87874 0.88293 0.88152 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.10 36.00 0.29 -0.93 16 2 C -0.01 -0.06 5.82 -101.17 -0.59 -0.64 16 3 C -0.23 -2.45 9.67 -37.81 -0.37 -2.81 16 4 C 0.54 7.36 7.73 -12.66 -0.10 7.26 16 5 O -0.55 -8.90 13.11 5.26 0.07 -8.83 16 6 N -0.72 -9.24 5.55 -61.49 -0.34 -9.58 16 7 C 0.13 1.83 5.52 -4.04 -0.02 1.80 16 8 C -0.12 -1.81 3.64 -89.65 -0.33 -2.14 16 9 C -0.15 -2.38 7.38 -25.91 -0.19 -2.57 16 10 C 0.17 3.26 4.55 -67.12 -0.31 2.96 16 11 N -0.71 -17.40 5.31 -52.64 -0.28 -17.68 16 12 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 13 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 14 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 15 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 16 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C -0.17 -2.82 7.45 -25.77 -0.19 -3.01 16 21 C -0.13 -1.03 6.00 -91.77 -0.55 -1.58 16 22 C -0.18 -1.11 9.83 -26.69 -0.26 -1.37 16 23 C -0.16 -1.08 10.13 -26.69 -0.27 -1.35 16 24 H 0.08 1.00 7.18 -51.93 -0.37 0.63 16 25 H 0.05 0.43 5.57 -51.93 -0.29 0.15 16 26 H 0.08 0.97 7.28 -51.93 -0.38 0.59 16 27 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 28 H 0.40 4.52 8.46 -40.82 -0.35 4.18 16 29 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 35 H 0.38 10.02 7.90 -40.82 -0.32 9.69 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 39 H 0.12 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.10 0.64 6.10 -51.93 -0.32 0.32 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -31.07 352.99 -9.70 -40.77 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -7.04 Total: 11.57 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -3.13 Total: -11.62 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.10 Total: -54.36 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.07 -9.70 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479753943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.322 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds