Wall clock time and date at job start Tue Mar 31 2020 00:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47113 * 120.00070 * 2 1 4 4 C 1.50701 * 120.00245 * 5.41276 * 3 2 1 5 5 C 1.32871 * 120.00045 * 185.41505 * 3 2 1 6 6 C 1.50699 * 119.99895 * 4.12451 * 5 3 2 7 7 C 1.50701 * 109.47011 * 125.41046 * 6 5 3 8 8 O 1.21282 * 120.00379 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00183 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00070 * 179.72783 * 9 7 6 11 11 H 1.08998 * 109.49621 * 324.93632 * 10 9 7 12 12 C 1.53042 * 109.49455 * 204.84106 * 10 9 7 13 13 C 1.53042 * 109.53449 * 178.68332 * 12 10 9 14 14 C 1.53191 * 109.31348 * 61.36805 * 13 12 10 15 15 N 1.46932 * 108.77245 * 305.36137 * 14 13 12 16 16 C 1.36933 * 120.63061 * 233.63000 * 15 14 13 17 17 H 1.08007 * 120.00208 * 30.75861 * 16 15 14 18 18 C 1.38805 * 119.99996 * 210.75711 * 16 15 14 19 19 N 1.31618 * 120.00404 * 11.54448 * 18 16 15 20 20 Si 1.86803 * 120.00230 * 191.54307 * 18 16 15 21 21 H 1.48507 * 109.46910 * 89.99664 * 20 18 16 22 22 H 1.48500 * 109.47473 * 209.99942 * 20 18 16 23 23 H 1.48505 * 109.46948 * 330.00578 * 20 18 16 24 24 C 1.46924 * 118.73668 * 53.61346 * 15 14 13 25 25 H 1.08005 * 120.00136 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00270 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99639 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47256 * 270.00090 * 4 3 2 29 29 H 1.09003 * 109.46930 * 30.00198 * 4 3 2 30 30 H 1.08997 * 109.47221 * 149.99851 * 4 3 2 31 31 H 1.07999 * 120.00161 * 184.12577 * 5 3 2 32 32 H 1.08998 * 109.47022 * 5.41688 * 6 5 3 33 33 H 1.09003 * 109.47362 * 245.41441 * 6 5 3 34 34 H 0.97004 * 120.00084 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.46373 * 298.70156 * 12 10 9 36 36 H 1.09000 * 109.46576 * 58.66742 * 12 10 9 37 37 H 1.08993 * 109.50015 * 301.41042 * 13 12 10 38 38 H 1.09005 * 109.52270 * 181.33447 * 13 12 10 39 39 H 1.08999 * 109.58802 * 185.57941 * 14 13 12 40 40 H 1.08999 * 109.59033 * 65.14787 * 14 13 12 41 41 H 0.96995 * 120.00461 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.58425 * 186.60383 * 24 15 14 43 43 H 1.08999 * 109.58988 * 66.17244 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3159 2.5763 0.1231 5 6 3.3885 1.2766 -0.1086 6 6 4.1293 -0.0178 -0.3250 7 6 4.9958 0.0985 -1.5525 8 8 5.0107 1.1310 -2.1887 9 7 5.7549 -0.9445 -1.9429 10 6 6.5927 -0.8334 -3.1396 11 1 6.0856 -0.2182 -3.8828 12 6 6.8463 -2.2279 -3.7167 13 6 7.6940 -2.1103 -4.9854 14 6 9.0452 -1.4790 -4.6352 15 7 8.8067 -0.2022 -3.9483 16 6 9.3889 0.9521 -4.3995 17 1 9.5942 1.0777 -5.4524 18 6 9.7151 1.9610 -3.5037 19 7 9.6795 1.7282 -2.2087 20 14 10.2049 3.6492 -4.1359 21 1 8.9939 4.4986 -4.2681 22 1 11.1505 4.2804 -3.1806 23 1 10.8593 3.5105 -5.4617 24 6 7.9313 -0.1876 -2.7684 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8686 -0.9354 0.0004 28 1 1.0515 2.9387 -0.8703 29 1 0.4084 2.4200 0.7064 30 1 1.9464 3.3119 0.6224 31 1 3.9340 2.2063 -0.0417 32 1 3.4129 -0.8279 -0.4615 33 1 4.7547 -0.2281 0.5426 34 1 5.7433 -1.7702 -1.4339 35 1 7.3751 -2.8346 -2.9816 36 1 5.8939 -2.6995 -3.9589 37 1 7.1769 -1.4834 -5.7118 38 1 7.8546 -3.1016 -5.4095 39 1 9.6135 -1.3020 -5.5483 40 1 9.6022 -2.1482 -3.9795 41 1 9.9079 2.4330 -1.5827 42 1 7.7647 0.8414 -2.4498 43 1 8.3975 -0.7516 -1.9605 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479908093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:19 Heat of formation + Delta-G solvation = 8.835976 kcal Electronic energy + Delta-G solvation = -21832.809614 eV Core-core repulsion = 18685.981613 eV Total energy + Delta-G solvation = -3146.828001 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.49072 -37.52228 -36.68681 -34.04005 -32.65022 -31.99227 -30.23394 -29.90823 -28.59457 -25.41367 -25.23421 -22.30166 -22.05916 -21.57994 -19.93976 -19.25998 -17.64506 -16.77779 -16.66999 -15.83917 -15.56147 -14.86002 -14.71621 -14.12511 -13.89855 -13.60205 -13.47937 -13.20884 -12.99159 -12.62403 -12.41389 -12.34825 -12.29382 -11.98208 -11.88388 -11.50718 -10.95620 -10.73516 -10.69320 -10.68568 -10.51636 -10.46703 -10.21574 -9.94350 -9.92333 -9.49247 -9.30929 -8.48599 -8.39723 -8.24158 -6.58284 -5.71950 -3.20527 1.30801 2.94795 3.11925 3.44190 3.50532 3.50833 3.71678 4.55484 4.62435 4.80583 4.99027 5.13303 5.33827 5.40279 5.43680 5.43948 5.50955 5.57430 5.58720 5.64671 5.68242 5.69739 5.77667 5.98881 6.12039 6.17535 6.32133 6.35237 6.37474 6.44766 6.54689 6.69440 6.73898 6.80940 6.90283 6.98559 7.02197 7.35867 7.79003 7.86122 8.01112 8.53739 8.74550 9.27154 9.89344 10.45479 11.35478 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.004517 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.067970 B = 6197.205771 C = 7437.195092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 C -0.123 4.123 4 C -0.113 4.113 5 C -0.104 4.104 6 C -0.121 4.121 7 C 0.512 3.488 8 O -0.530 6.530 9 N -0.723 5.723 10 C 0.116 3.884 11 H 0.080 0.920 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.142 3.858 15 N -0.589 5.589 16 C -0.256 4.256 17 H 0.065 0.935 18 C 0.008 3.992 19 N -0.902 5.902 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.168 3.832 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.391 0.609 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.253 0.747 42 H 0.096 0.904 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.603 -7.577 5.292 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.136 4.136 3 C -0.123 4.123 4 C -0.169 4.169 5 C -0.122 4.122 6 C -0.160 4.160 7 C 0.297 3.703 8 O -0.406 6.406 9 N -0.374 5.374 10 C 0.011 3.989 11 H 0.098 0.902 12 C -0.154 4.154 13 C -0.171 4.171 14 C 0.016 3.984 15 N -0.312 5.312 16 C -0.386 4.386 17 H 0.083 0.917 18 C -0.191 4.191 19 N -0.546 5.546 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.041 3.959 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.224 0.776 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -14.512 -6.684 4.941 16.724 hybrid contribution 0.289 0.363 0.046 0.467 sum -14.222 -6.320 4.987 16.343 Atomic orbital electron populations 1.24366 0.95735 1.01841 1.00959 1.21985 0.95308 0.96412 0.99887 1.20510 0.93843 0.94266 1.03680 1.20752 0.99840 0.94276 1.02046 1.22894 0.93970 0.98100 0.97274 1.20884 0.99189 0.98281 0.97680 1.20371 0.80113 0.83830 0.85986 1.90744 1.65682 1.28523 1.55623 1.46091 1.45341 1.15903 1.30057 1.21970 0.94188 0.96658 0.86114 0.90226 1.21671 0.99042 0.96423 0.98224 1.22004 0.98755 0.99770 0.96578 1.20964 0.93000 0.88337 0.96113 1.43946 1.52262 1.02840 1.32158 1.19156 1.34468 0.93259 0.91694 0.91742 1.25130 0.99105 0.99552 0.95339 1.69964 1.51893 1.32165 1.00545 0.86265 0.78009 0.84433 0.77888 1.21258 1.21695 1.20394 1.21102 0.84958 1.01563 0.88264 0.88196 0.88357 0.86574 0.91435 0.92000 0.91641 0.86057 0.88449 0.87983 0.77595 0.92304 0.93223 0.92191 0.92695 0.92660 0.96421 0.93663 0.88632 0.96596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 14.07 28.88 0.41 -1.31 16 2 C -0.12 -1.22 9.24 -37.83 -0.35 -1.57 16 3 C -0.12 -1.46 5.98 -102.87 -0.62 -2.08 16 4 C -0.11 -1.16 9.39 36.01 0.34 -0.82 16 5 C -0.10 -1.40 8.44 -36.16 -0.31 -1.70 16 6 C -0.12 -1.51 5.95 -29.03 -0.17 -1.68 16 7 C 0.51 8.94 7.79 -10.98 -0.09 8.86 16 8 O -0.53 -12.03 15.70 5.56 0.09 -11.94 16 9 N -0.72 -11.78 5.08 -53.69 -0.27 -12.05 16 10 C 0.12 2.30 2.60 -67.81 -0.18 2.13 16 11 H 0.08 1.82 7.59 -51.93 -0.39 1.43 16 12 C -0.12 -1.89 5.35 -26.69 -0.14 -2.03 16 13 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 14 C 0.14 3.00 6.52 -3.71 -0.02 2.98 16 15 N -0.59 -15.24 2.99 -172.32 -0.51 -15.75 16 16 C -0.26 -7.30 9.58 -15.06 -0.14 -7.45 16 17 H 0.06 1.80 7.86 -52.48 -0.41 1.39 16 18 C 0.01 0.22 5.03 -17.43 -0.09 0.14 16 19 N -0.90 -27.15 11.06 55.49 0.61 -26.54 16 20 Si 0.90 22.73 29.57 -169.99 -5.03 17.70 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.17 4.16 4.84 -3.71 -0.02 4.14 16 25 H 0.10 0.83 6.31 -52.48 -0.33 0.50 16 26 H 0.10 0.72 8.06 -52.49 -0.42 0.29 16 27 H 0.12 1.05 5.92 -52.48 -0.31 0.74 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.53 6.67 -51.93 -0.35 0.19 16 30 H 0.06 0.64 8.06 -51.93 -0.42 0.23 16 31 H 0.12 1.78 8.05 -52.49 -0.42 1.36 16 32 H 0.10 0.97 5.33 -51.93 -0.28 0.70 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.39 4.86 8.60 -40.82 -0.35 4.50 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.10 2.80 6.08 -51.93 -0.32 2.48 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -33.70 346.46 -8.36 -42.06 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.93 Total: 4.12 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.54 Total: -2.81 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.17 Total: -54.34 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.70 -8.36 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479908093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.894 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds