Wall clock time and date at job start Tue Mar 31 2020 00:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47113 * 120.00070 * 2 1 4 4 C 1.50701 * 120.00245 * 5.41276 * 3 2 1 5 5 C 1.32871 * 120.00045 * 185.41505 * 3 2 1 6 6 C 1.50699 * 119.99895 * 4.12451 * 5 3 2 7 7 C 1.50701 * 109.47011 * 125.41046 * 6 5 3 8 8 O 1.21282 * 120.00379 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00183 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00070 * 179.72783 * 9 7 6 11 11 H 1.08998 * 109.49621 * 324.93632 * 10 9 7 12 12 C 1.53042 * 109.49455 * 204.84106 * 10 9 7 13 13 C 1.53042 * 109.53449 * 178.68332 * 12 10 9 14 14 C 1.53191 * 109.31348 * 61.36805 * 13 12 10 15 15 N 1.46932 * 108.77245 * 305.36137 * 14 13 12 16 16 C 1.36933 * 120.63061 * 233.63000 * 15 14 13 17 17 H 1.08007 * 120.00208 * 30.75861 * 16 15 14 18 18 C 1.38805 * 119.99996 * 210.75711 * 16 15 14 19 19 N 1.31618 * 120.00404 * 11.54448 * 18 16 15 20 20 Si 1.86803 * 120.00230 * 191.54307 * 18 16 15 21 21 H 1.48507 * 109.46910 * 89.99664 * 20 18 16 22 22 H 1.48500 * 109.47473 * 209.99942 * 20 18 16 23 23 H 1.48505 * 109.46948 * 330.00578 * 20 18 16 24 24 C 1.46924 * 118.73668 * 53.61346 * 15 14 13 25 25 H 1.08005 * 120.00136 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00270 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99639 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47256 * 270.00090 * 4 3 2 29 29 H 1.09003 * 109.46930 * 30.00198 * 4 3 2 30 30 H 1.08997 * 109.47221 * 149.99851 * 4 3 2 31 31 H 1.07999 * 120.00161 * 184.12577 * 5 3 2 32 32 H 1.08998 * 109.47022 * 5.41688 * 6 5 3 33 33 H 1.09003 * 109.47362 * 245.41441 * 6 5 3 34 34 H 0.97004 * 120.00084 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.46373 * 298.70156 * 12 10 9 36 36 H 1.09000 * 109.46576 * 58.66742 * 12 10 9 37 37 H 1.08993 * 109.50015 * 301.41042 * 13 12 10 38 38 H 1.09005 * 109.52270 * 181.33447 * 13 12 10 39 39 H 1.08999 * 109.58802 * 185.57941 * 14 13 12 40 40 H 1.08999 * 109.59033 * 65.14787 * 14 13 12 41 41 H 0.96995 * 120.00461 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.58425 * 186.60383 * 24 15 14 43 43 H 1.08999 * 109.58988 * 66.17244 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3159 2.5763 0.1231 5 6 3.3885 1.2766 -0.1086 6 6 4.1293 -0.0178 -0.3250 7 6 4.9958 0.0985 -1.5525 8 8 5.0107 1.1310 -2.1887 9 7 5.7549 -0.9445 -1.9429 10 6 6.5927 -0.8334 -3.1396 11 1 6.0856 -0.2182 -3.8828 12 6 6.8463 -2.2279 -3.7167 13 6 7.6940 -2.1103 -4.9854 14 6 9.0452 -1.4790 -4.6352 15 7 8.8067 -0.2022 -3.9483 16 6 9.3889 0.9521 -4.3995 17 1 9.5942 1.0777 -5.4524 18 6 9.7151 1.9610 -3.5037 19 7 9.6795 1.7282 -2.2087 20 14 10.2049 3.6492 -4.1359 21 1 8.9939 4.4986 -4.2681 22 1 11.1505 4.2804 -3.1806 23 1 10.8593 3.5105 -5.4617 24 6 7.9313 -0.1876 -2.7684 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8686 -0.9354 0.0004 28 1 1.0515 2.9387 -0.8703 29 1 0.4084 2.4200 0.7064 30 1 1.9464 3.3119 0.6224 31 1 3.9340 2.2063 -0.0417 32 1 3.4129 -0.8279 -0.4615 33 1 4.7547 -0.2281 0.5426 34 1 5.7433 -1.7702 -1.4339 35 1 7.3751 -2.8346 -2.9816 36 1 5.8939 -2.6995 -3.9589 37 1 7.1769 -1.4834 -5.7118 38 1 7.8546 -3.1016 -5.4095 39 1 9.6135 -1.3020 -5.5483 40 1 9.6022 -2.1482 -3.9795 41 1 9.9079 2.4330 -1.5827 42 1 7.7647 0.8414 -2.4498 43 1 8.3975 -0.7516 -1.9605 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479908093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:19 Heat of formation + Delta-G solvation = -13.267981 kcal Electronic energy + Delta-G solvation = -21833.768114 eV Core-core repulsion = 18685.981613 eV Total energy + Delta-G solvation = -3147.786501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93607 -39.04831 -37.75783 -35.77086 -34.43236 -32.97254 -31.91548 -31.16216 -30.02807 -27.26436 -26.44556 -23.95710 -23.54827 -22.64166 -21.42151 -20.86809 -18.76149 -18.52571 -17.98193 -17.26259 -16.82606 -16.58257 -15.89565 -15.80468 -15.34867 -15.17341 -14.89344 -14.58610 -14.27920 -14.11936 -13.96830 -13.52818 -13.45457 -13.23471 -12.96160 -12.89983 -12.72312 -12.50259 -12.42405 -12.26894 -12.04714 -11.70508 -11.61227 -11.49326 -11.32693 -11.26549 -10.78409 -10.59992 -10.03692 -9.13063 -8.66009 -7.89625 -5.41185 0.44956 1.38949 1.43743 1.50282 1.74466 2.06236 2.40950 2.50284 3.26755 3.73044 3.73605 3.91314 3.99293 4.04388 4.14567 4.20041 4.31344 4.43054 4.50918 4.57749 4.63772 4.67720 4.77992 4.80714 4.82266 4.92869 4.94501 5.08381 5.13130 5.20143 5.24014 5.34627 5.50693 5.51057 5.52611 5.59351 5.60834 5.80757 5.82744 6.04930 6.37240 6.70694 7.11617 7.42842 7.83615 8.33235 9.14244 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.004517 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.067970 B = 6197.205771 C = 7437.195092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.147 4.147 3 C -0.107 4.107 4 C -0.118 4.118 5 C -0.146 4.146 6 C -0.103 4.103 7 C 0.504 3.496 8 O -0.592 6.592 9 N -0.710 5.710 10 C 0.130 3.870 11 H 0.044 0.956 12 C -0.106 4.106 13 C -0.122 4.122 14 C 0.135 3.865 15 N -0.612 5.612 16 C -0.267 4.267 17 H 0.066 0.934 18 C -0.049 4.049 19 N -0.932 5.932 20 Si 0.964 3.036 21 H -0.294 1.294 22 H -0.289 1.289 23 H -0.261 1.261 24 C 0.180 3.820 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.415 0.585 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.023 0.977 41 H 0.247 0.753 42 H 0.042 0.958 43 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.599 -10.157 5.205 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.107 4.107 4 C -0.175 4.175 5 C -0.164 4.164 6 C -0.142 4.142 7 C 0.292 3.708 8 O -0.472 6.472 9 N -0.362 5.362 10 C 0.023 3.977 11 H 0.063 0.937 12 C -0.144 4.144 13 C -0.162 4.162 14 C 0.010 3.990 15 N -0.336 5.336 16 C -0.397 4.397 17 H 0.084 0.916 18 C -0.245 4.245 19 N -0.578 5.578 20 Si 0.792 3.208 21 H -0.221 1.221 22 H -0.215 1.215 23 H -0.185 1.185 24 C 0.053 3.947 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.149 0.851 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.252 0.748 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -16.512 -9.337 4.857 19.581 hybrid contribution 0.802 1.153 0.071 1.406 sum -15.711 -8.184 4.928 18.387 Atomic orbital electron populations 1.24673 0.95299 1.03209 0.97463 1.22091 0.95993 0.95972 1.02356 1.20832 0.93426 0.95798 1.00672 1.20843 1.00594 0.93754 1.02276 1.22772 0.94810 0.97652 1.01190 1.20836 0.99010 0.98924 0.95402 1.21381 0.79966 0.82778 0.86721 1.90715 1.67691 1.30922 1.57835 1.45914 1.44162 1.16852 1.29273 1.21477 0.91298 0.98301 0.86631 0.93734 1.21634 1.00949 0.93846 0.97928 1.21908 0.96039 1.01334 0.96892 1.21189 0.95707 0.86510 0.95571 1.44239 1.52798 1.04013 1.32514 1.19512 1.33661 0.94666 0.91874 0.91617 1.25900 0.99990 1.03023 0.95592 1.70132 1.53386 1.32737 1.01527 0.85310 0.77268 0.80084 0.78099 1.22133 1.21520 1.18516 1.20787 0.87410 0.98669 0.87797 0.87721 0.86150 0.85123 0.91636 0.89855 0.91898 0.88898 0.85076 0.85965 0.74820 0.90572 0.89591 0.93285 0.88381 0.92743 0.95940 0.94372 0.93981 0.98213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 14.07 66.64 0.94 -1.48 16 2 C -0.15 -2.62 9.24 23.42 0.22 -2.40 16 3 C -0.11 -2.46 5.98 -18.71 -0.11 -2.57 16 4 C -0.12 -2.35 9.39 71.24 0.67 -1.68 16 5 C -0.15 -4.01 8.44 24.51 0.21 -3.81 16 6 C -0.10 -2.48 5.95 29.10 0.17 -2.31 16 7 C 0.50 17.93 7.79 87.66 0.68 18.61 16 8 O -0.59 -28.53 15.70 -3.03 -0.05 -28.58 16 9 N -0.71 -22.67 5.08 -442.16 -2.25 -24.92 16 10 C 0.13 5.15 2.60 45.07 0.12 5.27 16 11 H 0.04 2.10 7.59 -2.39 -0.02 2.08 16 12 C -0.11 -3.13 5.35 30.62 0.16 -2.97 16 13 C -0.12 -3.88 6.08 30.67 0.19 -3.69 16 14 C 0.14 5.59 6.52 86.36 0.56 6.15 16 15 N -0.61 -32.39 2.99 -699.09 -2.09 -34.48 16 16 C -0.27 -15.67 9.58 84.03 0.81 -14.86 16 17 H 0.07 3.74 7.86 -2.91 -0.02 3.72 16 18 C -0.05 -2.97 5.03 84.86 0.43 -2.54 16 19 N -0.93 -58.85 11.06 21.65 0.24 -58.61 16 20 Si 0.96 48.33 29.57 68.60 2.03 50.36 16 21 H -0.29 -14.99 7.11 99.48 0.71 -14.29 16 22 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 23 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 24 C 0.18 9.28 4.84 86.36 0.42 9.70 16 25 H 0.10 1.38 6.31 -2.91 -0.02 1.36 16 26 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 27 H 0.13 1.89 5.92 -2.91 -0.02 1.87 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.27 6.67 -2.39 -0.02 1.25 16 30 H 0.06 1.27 8.06 -2.39 -0.02 1.25 16 31 H 0.09 3.01 8.05 -2.91 -0.02 2.99 16 32 H 0.13 2.24 5.33 -2.39 -0.01 2.23 16 33 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.41 9.27 8.60 -92.71 -0.80 8.48 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 39 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.04 2.61 6.08 -2.38 -0.01 2.60 16 43 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -79.44 346.46 3.53 -75.91 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.19 Total: 18.90 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.45 Total: 1.41 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -4.10 Total: -118.01 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.05 Total: -28.58 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -79.44 3.53 -75.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479908093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.639 kcal (2) G-P(sol) polarization free energy of solvation -79.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds