Wall clock time and date at job start Tue Mar 31 2020 00:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47119 * 120.00121 * 2 1 4 4 C 1.50700 * 119.99987 * 4.94861 * 3 2 1 5 5 C 1.32873 * 120.00215 * 184.94895 * 3 2 1 6 6 C 1.50707 * 119.99723 * 353.19006 * 5 3 2 7 7 C 1.50696 * 109.47407 * 121.18838 * 6 5 3 8 8 O 1.21290 * 119.99513 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00276 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99792 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.49847 * 34.94050 * 10 9 7 12 12 C 1.53046 * 109.49618 * 155.00709 * 10 9 7 13 13 C 1.53032 * 109.53921 * 181.31558 * 12 10 9 14 14 C 1.53188 * 109.31218 * 298.63170 * 13 12 10 15 15 N 1.46922 * 108.77511 * 54.63966 * 14 13 12 16 16 C 1.36938 * 120.63564 * 126.41471 * 15 14 13 17 17 H 1.07994 * 120.00138 * 211.83799 * 16 15 14 18 18 C 1.38819 * 119.99700 * 31.82993 * 16 15 14 19 19 N 1.31613 * 120.00154 * 10.07990 * 18 16 15 20 20 Si 1.86801 * 119.99766 * 190.08052 * 18 16 15 21 21 H 1.48496 * 109.47215 * 89.99746 * 20 18 16 22 22 H 1.48497 * 109.47245 * 210.00143 * 20 18 16 23 23 H 1.48504 * 109.47168 * 330.00047 * 20 18 16 24 24 C 1.46926 * 118.73473 * 306.38712 * 15 14 13 25 25 H 1.08000 * 120.00007 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99752 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00338 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46935 * 270.00153 * 4 3 2 29 29 H 1.09001 * 109.46634 * 30.00132 * 4 3 2 30 30 H 1.08999 * 109.47197 * 150.00241 * 4 3 2 31 31 H 1.07991 * 120.00560 * 173.18695 * 5 3 2 32 32 H 1.08998 * 109.47219 * 1.18456 * 6 5 3 33 33 H 1.09001 * 109.46601 * 241.18829 * 6 5 3 34 34 H 0.96994 * 119.99911 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.45355 * 301.33844 * 12 10 9 36 36 H 1.08999 * 109.46052 * 61.30274 * 12 10 9 37 37 H 1.09004 * 109.49738 * 58.58534 * 13 12 10 38 38 H 1.09004 * 109.49604 * 178.67849 * 13 12 10 39 39 H 1.09009 * 109.58432 * 174.41869 * 14 13 12 40 40 H 1.08997 * 109.59106 * 294.70343 * 14 13 12 41 41 H 0.96999 * 119.99899 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.58581 * 293.82030 * 24 15 14 43 43 H 1.09000 * 109.58500 * 173.40379 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3151 2.5768 0.1126 5 6 3.3893 1.2762 -0.0993 6 6 4.1502 -0.0240 -0.0573 7 6 4.9462 -0.1815 -1.3271 8 8 4.8998 0.6773 -2.1823 9 7 5.7095 -1.2766 -1.5125 10 6 6.4829 -1.4299 -2.7473 11 1 6.8363 -0.4536 -3.0788 12 6 7.6811 -2.3463 -2.4891 13 6 8.5079 -2.4809 -3.7698 14 6 7.6442 -3.1119 -4.8664 15 7 6.4190 -2.3158 -5.0201 16 6 6.0505 -1.8320 -6.2471 17 1 5.5189 -0.8948 -6.3205 18 6 6.3604 -2.5462 -7.3964 19 7 6.8270 -3.7733 -7.3029 20 14 6.1150 -1.7656 -9.0756 21 1 7.3570 -1.0585 -9.4791 22 1 5.8010 -2.8217 -10.0713 23 1 4.9920 -0.7960 -9.0115 24 6 5.5963 -2.0491 -3.8324 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8688 -0.9353 0.0004 28 1 1.0576 2.9351 -0.8841 29 1 0.4035 2.4228 0.6901 30 1 1.9421 3.3145 0.6132 31 1 3.9211 2.2096 -0.2101 32 1 3.4485 -0.8527 0.0369 33 1 4.8265 -0.0217 0.7976 34 1 5.7463 -1.9636 -0.8288 35 1 8.3006 -1.9202 -1.6999 36 1 7.3263 -3.3299 -2.1810 37 1 8.8423 -1.4948 -4.0923 38 1 9.3739 -3.1148 -3.5788 39 1 8.1955 -3.1192 -5.8068 40 1 7.3862 -4.1331 -4.5862 41 1 7.0432 -4.2724 -8.1060 42 1 5.1691 -2.9828 -3.4666 43 1 4.7962 -1.3553 -4.0904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479908096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:22 Heat of formation + Delta-G solvation = 8.639422 kcal Electronic energy + Delta-G solvation = -21652.765833 eV Core-core repulsion = 18505.929308 eV Total energy + Delta-G solvation = -3146.836525 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.68200 -37.57855 -36.75350 -34.23252 -32.49034 -31.97919 -30.42785 -30.17204 -28.48889 -25.48006 -25.25040 -22.35459 -22.05595 -21.65420 -20.11632 -19.29281 -17.69952 -16.83638 -16.74205 -15.93771 -15.73210 -14.88338 -14.68910 -14.33136 -14.03361 -13.66871 -13.42061 -13.25595 -13.09842 -12.71175 -12.55385 -12.37127 -12.29002 -12.04189 -11.82867 -11.58647 -11.03750 -10.85752 -10.79644 -10.76123 -10.56355 -10.25069 -10.17982 -9.91225 -9.86464 -9.62238 -9.44074 -8.75096 -8.39621 -8.29811 -6.58030 -5.75045 -3.23481 1.25461 2.86623 2.93894 3.41467 3.47102 3.49117 3.54360 4.53308 4.55264 4.75060 4.86585 5.04332 5.20470 5.34377 5.36355 5.40174 5.43498 5.49965 5.56005 5.59600 5.65652 5.65778 5.76307 5.88564 6.12169 6.19891 6.26370 6.27778 6.34030 6.56606 6.60398 6.64820 6.72975 6.73748 6.83908 6.88913 7.04684 7.40336 7.70889 7.81364 7.85564 8.49674 8.55840 9.26700 9.86729 10.44339 11.33190 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.003977 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.540170 B = 7038.498904 C = 7926.598088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.510 3.490 8 O -0.534 6.534 9 N -0.725 5.725 10 C 0.125 3.875 11 H 0.084 0.916 12 C -0.114 4.114 13 C -0.140 4.140 14 C 0.168 3.832 15 N -0.588 5.588 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.907 5.907 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.143 3.857 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.394 0.606 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.018 0.982 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 5.194 18.349 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.140 4.140 3 C -0.112 4.112 4 C -0.171 4.171 5 C -0.132 4.132 6 C -0.160 4.160 7 C 0.296 3.704 8 O -0.410 6.410 9 N -0.376 5.376 10 C 0.020 3.980 11 H 0.102 0.898 12 C -0.152 4.152 13 C -0.180 4.180 14 C 0.043 3.957 15 N -0.311 5.311 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.194 4.194 19 N -0.551 5.551 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.015 3.985 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.227 0.773 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.516 5.712 17.552 19.265 hybrid contribution -0.041 -0.155 -0.581 0.603 sum -5.557 5.557 16.971 18.702 Atomic orbital electron populations 1.24390 0.95719 1.01968 1.00283 1.21990 0.95377 0.96383 1.00292 1.20547 0.93904 0.94355 1.02428 1.20770 0.99964 0.94207 1.02177 1.22777 0.93992 0.97770 0.98670 1.20943 0.99623 0.98521 0.96931 1.20517 0.79671 0.81845 0.88387 1.90736 1.63719 1.41589 1.44945 1.46182 1.47810 1.22236 1.21387 1.21727 0.91942 1.00398 0.83950 0.89757 1.21671 0.96197 0.98855 0.98496 1.22198 0.98213 1.01410 0.96208 1.20838 0.86640 0.91569 0.96675 1.43955 1.22178 1.61823 1.03139 1.19233 1.34395 1.01512 0.82893 0.91727 1.25160 1.00886 0.94992 0.98341 1.69974 1.48486 1.09084 1.27601 0.86235 0.78123 0.78254 0.83861 1.21363 1.21676 1.20341 1.21190 0.92979 0.96721 0.87599 0.88176 0.88171 0.86506 0.91406 0.91710 0.91691 0.86217 0.88135 0.88071 0.77315 0.93196 0.92307 0.92507 0.92794 0.89230 0.96353 0.93648 0.96599 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 14.07 28.88 0.41 -1.30 16 2 C -0.12 -1.27 9.33 -37.83 -0.35 -1.62 16 3 C -0.11 -1.23 5.98 -102.87 -0.61 -1.84 16 4 C -0.11 -1.04 9.40 36.01 0.34 -0.70 16 5 C -0.11 -1.32 8.43 -36.15 -0.30 -1.63 16 6 C -0.12 -1.28 5.98 -29.03 -0.17 -1.45 16 7 C 0.51 7.76 7.79 -10.99 -0.09 7.68 16 8 O -0.53 -10.77 15.70 5.55 0.09 -10.68 16 9 N -0.73 -10.37 5.08 -53.69 -0.27 -10.65 16 10 C 0.13 2.29 2.61 -67.81 -0.18 2.11 16 11 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 12 C -0.11 -1.86 5.35 -26.69 -0.14 -2.00 16 13 C -0.14 -2.66 6.08 -26.62 -0.16 -2.82 16 14 C 0.17 4.04 5.25 -3.71 -0.02 4.02 16 15 N -0.59 -15.29 2.98 -172.32 -0.51 -15.80 16 16 C -0.25 -7.19 9.58 -15.06 -0.14 -7.33 16 17 H 0.07 1.88 7.85 -52.49 -0.41 1.46 16 18 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 19 N -0.91 -26.63 11.05 55.49 0.61 -26.01 16 20 Si 0.91 22.37 29.57 -169.99 -5.03 17.34 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.14 3.20 6.09 -3.71 -0.02 3.18 16 25 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 26 H 0.10 0.83 6.29 -52.49 -0.33 0.50 16 27 H 0.12 1.11 5.77 -52.49 -0.30 0.81 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.50 6.64 -51.93 -0.34 0.15 16 30 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.10 0.91 5.25 -51.93 -0.27 0.64 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.39 4.21 8.60 -40.82 -0.35 3.86 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 2.41 6.12 -51.92 -0.32 2.09 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -33.02 346.37 -8.36 -41.38 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.92 Total: 2.88 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.54 Total: -3.67 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.17 Total: -52.46 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.02 -8.36 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479908096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.019 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds