Wall clock time and date at job start Tue Mar 31 2020 00:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47119 * 120.00121 * 2 1 4 4 C 1.50700 * 119.99987 * 4.94861 * 3 2 1 5 5 C 1.32873 * 120.00215 * 184.94895 * 3 2 1 6 6 C 1.50707 * 119.99723 * 353.19006 * 5 3 2 7 7 C 1.50696 * 109.47407 * 121.18838 * 6 5 3 8 8 O 1.21290 * 119.99513 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00276 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99792 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.49847 * 34.94050 * 10 9 7 12 12 C 1.53046 * 109.49618 * 155.00709 * 10 9 7 13 13 C 1.53032 * 109.53921 * 181.31558 * 12 10 9 14 14 C 1.53188 * 109.31218 * 298.63170 * 13 12 10 15 15 N 1.46922 * 108.77511 * 54.63966 * 14 13 12 16 16 C 1.36938 * 120.63564 * 126.41471 * 15 14 13 17 17 H 1.07994 * 120.00138 * 211.83799 * 16 15 14 18 18 C 1.38819 * 119.99700 * 31.82993 * 16 15 14 19 19 N 1.31613 * 120.00154 * 10.07990 * 18 16 15 20 20 Si 1.86801 * 119.99766 * 190.08052 * 18 16 15 21 21 H 1.48496 * 109.47215 * 89.99746 * 20 18 16 22 22 H 1.48497 * 109.47245 * 210.00143 * 20 18 16 23 23 H 1.48504 * 109.47168 * 330.00047 * 20 18 16 24 24 C 1.46926 * 118.73473 * 306.38712 * 15 14 13 25 25 H 1.08000 * 120.00007 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99752 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00338 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46935 * 270.00153 * 4 3 2 29 29 H 1.09001 * 109.46634 * 30.00132 * 4 3 2 30 30 H 1.08999 * 109.47197 * 150.00241 * 4 3 2 31 31 H 1.07991 * 120.00560 * 173.18695 * 5 3 2 32 32 H 1.08998 * 109.47219 * 1.18456 * 6 5 3 33 33 H 1.09001 * 109.46601 * 241.18829 * 6 5 3 34 34 H 0.96994 * 119.99911 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.45355 * 301.33844 * 12 10 9 36 36 H 1.08999 * 109.46052 * 61.30274 * 12 10 9 37 37 H 1.09004 * 109.49738 * 58.58534 * 13 12 10 38 38 H 1.09004 * 109.49604 * 178.67849 * 13 12 10 39 39 H 1.09009 * 109.58432 * 174.41869 * 14 13 12 40 40 H 1.08997 * 109.59106 * 294.70343 * 14 13 12 41 41 H 0.96999 * 119.99899 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.58581 * 293.82030 * 24 15 14 43 43 H 1.09000 * 109.58500 * 173.40379 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3151 2.5768 0.1126 5 6 3.3893 1.2762 -0.0993 6 6 4.1502 -0.0240 -0.0573 7 6 4.9462 -0.1815 -1.3271 8 8 4.8998 0.6773 -2.1823 9 7 5.7095 -1.2766 -1.5125 10 6 6.4829 -1.4299 -2.7473 11 1 6.8363 -0.4536 -3.0788 12 6 7.6811 -2.3463 -2.4891 13 6 8.5079 -2.4809 -3.7698 14 6 7.6442 -3.1119 -4.8664 15 7 6.4190 -2.3158 -5.0201 16 6 6.0505 -1.8320 -6.2471 17 1 5.5189 -0.8948 -6.3205 18 6 6.3604 -2.5462 -7.3964 19 7 6.8270 -3.7733 -7.3029 20 14 6.1150 -1.7656 -9.0756 21 1 7.3570 -1.0585 -9.4791 22 1 5.8010 -2.8217 -10.0713 23 1 4.9920 -0.7960 -9.0115 24 6 5.5963 -2.0491 -3.8324 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8688 -0.9353 0.0004 28 1 1.0576 2.9351 -0.8841 29 1 0.4035 2.4228 0.6901 30 1 1.9421 3.3145 0.6132 31 1 3.9211 2.2096 -0.2101 32 1 3.4485 -0.8527 0.0369 33 1 4.8265 -0.0217 0.7976 34 1 5.7463 -1.9636 -0.8288 35 1 8.3006 -1.9202 -1.6999 36 1 7.3263 -3.3299 -2.1810 37 1 8.8423 -1.4948 -4.0923 38 1 9.3739 -3.1148 -3.5788 39 1 8.1955 -3.1192 -5.8068 40 1 7.3862 -4.1331 -4.5862 41 1 7.0432 -4.2724 -8.1060 42 1 5.1691 -2.9828 -3.4666 43 1 4.7962 -1.3553 -4.0904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479908096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:22 Heat of formation + Delta-G solvation = -12.354096 kcal Electronic energy + Delta-G solvation = -21653.676180 eV Core-core repulsion = 18505.929308 eV Total energy + Delta-G solvation = -3147.746872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97735 -39.07331 -37.74723 -35.89469 -34.16607 -32.91944 -32.33843 -31.13366 -29.91104 -27.27993 -26.40777 -23.91310 -23.64883 -22.67390 -21.43185 -20.92353 -18.73901 -18.51275 -17.97398 -17.22778 -16.86349 -16.67942 -15.92472 -15.66529 -15.53832 -15.23170 -14.83136 -14.64915 -14.26949 -14.12256 -14.01472 -13.46188 -13.42544 -13.25162 -13.00704 -12.89084 -12.79024 -12.55550 -12.39104 -12.13967 -12.00774 -11.75350 -11.59109 -11.51400 -11.34183 -11.32883 -10.80701 -10.62397 -10.09387 -9.10882 -8.65020 -7.91708 -5.44158 0.45817 1.42672 1.43420 1.53295 1.71641 2.05008 2.35555 2.50799 3.23015 3.70647 3.75730 3.85100 3.96331 4.02309 4.11736 4.22217 4.28050 4.44538 4.48142 4.59555 4.62465 4.68826 4.78647 4.80534 4.82690 4.92290 4.94591 5.01711 5.12691 5.15448 5.18682 5.27831 5.48270 5.50290 5.58412 5.60573 5.61270 5.77083 5.82676 6.05173 6.37550 6.67581 7.12251 7.38651 7.80159 8.31267 9.13037 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.003977 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.540170 B = 7038.498904 C = 7926.598088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 C -0.112 4.112 4 C -0.117 4.117 5 C -0.140 4.140 6 C -0.106 4.106 7 C 0.506 3.494 8 O -0.590 6.590 9 N -0.710 5.710 10 C 0.141 3.859 11 H 0.052 0.948 12 C -0.103 4.103 13 C -0.131 4.131 14 C 0.173 3.827 15 N -0.609 5.609 16 C -0.272 4.272 17 H 0.049 0.951 18 C -0.040 4.040 19 N -0.930 5.930 20 Si 0.968 3.032 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.146 3.854 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.124 0.876 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.417 0.583 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.005 0.995 41 H 0.253 0.747 42 H 0.021 0.979 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 4.813 20.530 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C -0.112 4.112 4 C -0.174 4.174 5 C -0.158 4.158 6 C -0.145 4.145 7 C 0.294 3.706 8 O -0.470 6.470 9 N -0.362 5.362 10 C 0.034 3.966 11 H 0.071 0.929 12 C -0.141 4.141 13 C -0.171 4.171 14 C 0.048 3.952 15 N -0.333 5.333 16 C -0.402 4.402 17 H 0.067 0.933 18 C -0.236 4.236 19 N -0.575 5.575 20 Si 0.796 3.204 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.201 1.201 24 C 0.019 3.981 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.142 0.858 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.254 0.746 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.023 0.977 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.699 5.306 19.799 21.275 hybrid contribution -0.096 -0.034 -1.249 1.253 sum -5.794 5.272 18.550 20.136 Atomic orbital electron populations 1.24643 0.95472 1.03079 0.98045 1.22140 0.96020 0.96384 1.02025 1.20842 0.93949 0.95414 1.01021 1.20835 1.00677 0.93709 1.02165 1.22827 0.94491 0.97950 1.00545 1.20951 0.99734 0.98704 0.95109 1.21423 0.79071 0.80858 0.89228 1.90718 1.65487 1.43587 1.47238 1.45952 1.46992 1.22888 1.20410 1.21209 0.92252 0.98797 0.84361 0.92948 1.21600 0.95119 0.99432 0.97944 1.22036 0.98597 1.00770 0.95673 1.20708 0.86352 0.91227 0.96937 1.44185 1.23535 1.62151 1.03383 1.19381 1.34746 1.01326 0.84745 0.93314 1.25853 1.00782 0.95493 1.01504 1.70112 1.49022 1.10042 1.28313 0.85270 0.78109 0.77460 0.79609 1.20689 1.21159 1.20130 1.21216 0.92792 0.96261 0.87845 0.86790 0.87422 0.85832 0.92037 0.90166 0.90911 0.87317 0.86141 0.84613 0.74582 0.89423 0.90494 0.93659 0.89702 0.92752 0.97661 0.93766 0.96102 0.95659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 14.07 66.64 0.94 -1.89 16 2 C -0.15 -2.80 9.33 23.43 0.22 -2.58 16 3 C -0.11 -2.33 5.98 -18.71 -0.11 -2.44 16 4 C -0.12 -2.00 9.40 71.24 0.67 -1.33 16 5 C -0.14 -3.14 8.43 24.51 0.21 -2.93 16 6 C -0.11 -2.02 5.98 29.10 0.17 -1.85 16 7 C 0.51 14.96 7.79 87.66 0.68 15.65 16 8 O -0.59 -24.46 15.70 -3.06 -0.05 -24.51 16 9 N -0.71 -18.98 5.08 -442.17 -2.25 -21.23 16 10 C 0.14 5.05 2.61 45.07 0.12 5.17 16 11 H 0.05 2.25 7.58 -2.39 -0.02 2.24 16 12 C -0.10 -3.07 5.35 30.62 0.16 -2.90 16 13 C -0.13 -4.79 6.08 30.67 0.19 -4.60 16 14 C 0.17 8.42 5.25 86.36 0.45 8.88 16 15 N -0.61 -32.59 2.98 -699.11 -2.09 -34.67 16 16 C -0.27 -16.18 9.58 84.04 0.80 -15.37 16 17 H 0.05 2.98 7.85 -2.91 -0.02 2.96 16 18 C -0.04 -2.35 5.06 84.86 0.43 -1.92 16 19 N -0.93 -55.81 11.05 21.65 0.24 -55.57 16 20 Si 0.97 46.93 29.57 68.60 2.03 48.96 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 24 C 0.15 6.67 6.09 86.36 0.53 7.20 16 25 H 0.11 1.50 8.06 -2.91 -0.02 1.47 16 26 H 0.11 1.53 6.29 -2.91 -0.02 1.52 16 27 H 0.12 2.08 5.77 -2.91 -0.02 2.06 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.09 6.64 -2.39 -0.02 1.07 16 30 H 0.07 1.11 8.07 -2.39 -0.02 1.09 16 31 H 0.11 2.62 8.06 -2.92 -0.02 2.60 16 32 H 0.12 1.84 5.25 -2.39 -0.01 1.83 16 33 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.42 7.40 8.60 -92.71 -0.80 6.61 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.05 3.01 6.12 -2.38 -0.01 3.00 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.02 1.28 7.93 -2.39 -0.02 1.26 16 Total: -1.00 -75.55 346.37 3.54 -72.01 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.19 Total: 15.93 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 5.46 Total: -0.93 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.09 Total: -111.47 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -75.55 3.54 -72.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479908096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.658 kcal (2) G-P(sol) polarization free energy of solvation -75.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds