Wall clock time and date at job start Tue Mar 31 2020 00:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32864 * 1 3 3 C 1.47115 * 120.00365 * 2 1 4 4 C 1.50698 * 119.99758 * 359.97438 * 3 2 1 5 5 C 1.32878 * 119.99903 * 180.02562 * 3 2 1 6 6 C 1.50704 * 119.99664 * 174.52121 * 5 3 2 7 7 C 1.50699 * 109.46927 * 236.19907 * 6 5 3 8 8 O 1.21286 * 120.00077 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00344 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00308 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.49803 * 34.93982 * 10 9 7 12 12 C 1.53045 * 109.49437 * 154.99894 * 10 9 7 13 13 C 1.53039 * 109.53608 * 181.31739 * 12 10 9 14 14 C 1.53193 * 109.31397 * 298.63904 * 13 12 10 15 15 N 1.46923 * 108.77850 * 54.63133 * 14 13 12 16 16 C 1.36935 * 120.63241 * 126.36858 * 15 14 13 17 17 H 1.08000 * 120.00237 * 210.78208 * 16 15 14 18 18 C 1.38811 * 119.99902 * 30.78065 * 16 15 14 19 19 N 1.31621 * 119.99775 * 19.64546 * 18 16 15 20 20 Si 1.86800 * 120.00380 * 199.63740 * 18 16 15 21 21 H 1.48496 * 109.47533 * 265.01984 * 20 18 16 22 22 H 1.48500 * 109.47411 * 145.01507 * 20 18 16 23 23 H 1.48508 * 109.46809 * 25.01877 * 20 18 16 24 24 C 1.46924 * 118.73966 * 306.64876 * 15 14 13 25 25 H 1.08005 * 119.99873 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00839 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.99873 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47129 * 264.66250 * 4 3 2 29 29 H 1.08995 * 109.47553 * 24.67135 * 4 3 2 30 30 H 1.09010 * 109.46755 * 144.66481 * 4 3 2 31 31 H 1.07997 * 119.99870 * 354.52092 * 5 3 2 32 32 H 1.08994 * 109.47078 * 116.20058 * 6 5 3 33 33 H 1.09000 * 109.46882 * 356.19630 * 6 5 3 34 34 H 0.97003 * 119.99382 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.45744 * 61.30233 * 12 10 9 36 36 H 1.08989 * 109.46319 * 301.33616 * 12 10 9 37 37 H 1.08996 * 109.50238 * 178.68823 * 13 12 10 38 38 H 1.09005 * 109.49725 * 58.58584 * 13 12 10 39 39 H 1.08998 * 109.58634 * 294.84601 * 14 13 12 40 40 H 1.09004 * 109.71013 * 174.49217 * 14 13 12 41 41 H 0.96998 * 119.99909 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58885 * 173.13889 * 24 15 14 43 43 H 1.09000 * 109.58719 * 293.56464 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5791 -0.0006 5 6 3.3931 1.2739 -0.0005 6 6 4.1466 2.5731 -0.1251 7 6 5.0818 2.5002 -1.3046 8 8 5.1312 1.4927 -1.9780 9 7 5.8633 3.5546 -1.6112 10 6 6.7728 3.4835 -2.7574 11 1 6.3132 2.8937 -3.5505 12 6 7.0579 4.8965 -3.2715 13 6 7.9818 4.8213 -4.4893 14 6 9.3105 4.1790 -4.0783 15 7 9.0335 2.8801 -3.4499 16 6 9.6447 1.7415 -3.9026 17 1 9.1369 0.7910 -3.8311 18 6 10.9171 1.8089 -4.4535 19 7 11.6881 2.8460 -4.2039 20 14 11.5351 0.4277 -5.5489 21 1 12.3227 -0.5338 -4.7364 22 1 12.3954 0.9922 -6.6195 23 1 10.3781 -0.2734 -6.1617 24 6 8.0835 2.8252 -2.3304 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8686 -0.9354 -0.0004 28 1 1.2124 2.9413 -1.0239 29 1 0.3203 2.4270 0.4280 30 1 1.8551 3.3131 0.5939 31 1 3.9330 0.3428 0.0884 32 1 4.7215 2.7483 0.7841 33 1 3.4402 3.3902 -0.2715 34 1 5.8235 4.3605 -1.0728 35 1 7.5395 5.4785 -2.4858 36 1 6.1210 5.3755 -3.5557 37 1 8.1657 5.8263 -4.8691 38 1 7.5114 4.2186 -5.2662 39 1 9.8250 4.8262 -3.3680 40 1 9.9361 4.0328 -4.9589 41 1 12.5771 2.8932 -4.5891 42 1 7.8975 1.7859 -2.0596 43 1 8.4958 3.3598 -1.4747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479908098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:26 Heat of formation + Delta-G solvation = 6.687008 kcal Electronic energy + Delta-G solvation = -21515.539647 eV Core-core repulsion = 18368.618459 eV Total energy + Delta-G solvation = -3146.921188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.70310 -37.60496 -36.78504 -34.24447 -32.70771 -32.27072 -30.44206 -29.44851 -28.26381 -26.53511 -25.25109 -22.47698 -22.07690 -21.03716 -19.97692 -19.24380 -17.98614 -17.00535 -16.73729 -16.09317 -15.63454 -14.84918 -14.71853 -14.26703 -14.01337 -13.82002 -13.54159 -13.32912 -13.16764 -12.85073 -12.58652 -12.40098 -12.29217 -11.87771 -11.69428 -11.58226 -11.08243 -11.00204 -10.88519 -10.74296 -10.65506 -10.27181 -10.23844 -9.91821 -9.89939 -9.61711 -9.45631 -8.78775 -8.37796 -8.32673 -6.62245 -5.78045 -3.20459 1.21255 2.85262 2.90347 3.40398 3.47386 3.50499 3.54988 4.52205 4.54526 4.71267 4.90483 5.07157 5.14540 5.21975 5.29459 5.31873 5.39574 5.47691 5.52597 5.54872 5.63587 5.67687 5.73652 5.83056 6.09274 6.17730 6.21792 6.26049 6.34751 6.53213 6.55185 6.60757 6.70563 6.71332 6.81000 6.86434 7.03245 7.32265 7.58412 7.79558 7.86879 8.46574 8.53517 9.23552 9.86007 10.43885 11.30953 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.003511 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.535330 B = 7972.110091 C = 8779.754537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.118 4.118 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.119 4.119 7 C 0.512 3.488 8 O -0.533 6.533 9 N -0.725 5.725 10 C 0.125 3.875 11 H 0.085 0.915 12 C -0.114 4.114 13 C -0.140 4.140 14 C 0.170 3.830 15 N -0.587 5.587 16 C -0.254 4.254 17 H 0.065 0.935 18 C 0.006 3.994 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.277 1.277 24 C 0.143 3.857 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.394 0.606 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.080 0.920 41 H 0.253 0.747 42 H 0.057 0.943 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.543 4.058 9.108 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.178 4.178 5 C -0.128 4.128 6 C -0.159 4.159 7 C 0.298 3.702 8 O -0.409 6.409 9 N -0.376 5.376 10 C 0.020 3.980 11 H 0.103 0.897 12 C -0.152 4.152 13 C -0.179 4.179 14 C 0.044 3.956 15 N -0.309 5.309 16 C -0.384 4.384 17 H 0.082 0.918 18 C -0.193 4.193 19 N -0.543 5.543 20 Si 0.729 3.271 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.203 1.203 24 C 0.015 3.985 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.132 0.868 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.227 0.773 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -18.312 3.343 8.543 20.482 hybrid contribution 0.463 -0.279 -0.278 0.608 sum -17.850 3.064 8.265 19.907 Atomic orbital electron populations 1.24367 0.95699 1.01880 1.01244 1.21875 0.95291 0.96171 0.99463 1.20520 0.93896 0.94307 1.03067 1.20880 1.00106 0.94612 1.02211 1.22826 0.93846 0.97966 0.98161 1.20836 0.98626 0.98280 0.98127 1.20422 0.80653 0.83443 0.85709 1.90740 1.67672 1.30589 1.51928 1.46156 1.41748 1.17030 1.32624 1.21638 0.91302 0.97428 0.87645 0.89737 1.21663 0.99091 0.95412 0.99036 1.22169 0.99195 1.00024 0.96549 1.20751 0.91490 0.85553 0.97788 1.43947 1.48339 1.04814 1.33838 1.19165 0.96119 0.87555 1.35570 0.91768 1.25063 0.95191 0.97597 1.01439 1.70081 1.08212 1.31180 1.44870 0.86331 0.78490 0.81730 0.80585 1.21405 1.21531 1.20253 1.21097 0.88198 0.98630 0.90535 0.88150 0.88271 0.86785 0.91464 0.91599 0.91386 0.86302 0.87963 0.88242 0.77275 0.92244 0.93126 0.92713 0.92392 0.96169 0.90187 0.93697 0.92451 0.96611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 14.12 28.88 0.41 -1.24 16 2 C -0.11 -1.11 9.83 -37.83 -0.37 -1.48 16 3 C -0.12 -1.23 5.98 -102.87 -0.62 -1.85 16 4 C -0.12 -0.99 8.56 36.00 0.31 -0.68 16 5 C -0.11 -1.27 8.45 -36.16 -0.31 -1.57 16 6 C -0.12 -1.23 5.81 -29.03 -0.17 -1.40 16 7 C 0.51 7.69 7.79 -10.99 -0.09 7.60 16 8 O -0.53 -10.66 15.70 5.55 0.09 -10.57 16 9 N -0.72 -10.20 5.08 -53.91 -0.27 -10.47 16 10 C 0.13 2.26 2.59 -68.03 -0.18 2.09 16 11 H 0.08 1.78 7.58 -51.93 -0.39 1.38 16 12 C -0.11 -1.83 5.36 -26.69 -0.14 -1.97 16 13 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 14 C 0.17 4.03 5.32 -3.71 -0.02 4.01 16 15 N -0.59 -15.12 2.98 -172.59 -0.51 -15.64 16 16 C -0.25 -7.27 9.53 -15.06 -0.14 -7.42 16 17 H 0.06 1.86 7.90 -52.49 -0.41 1.44 16 18 C 0.01 0.17 4.82 -17.43 -0.08 0.09 16 19 N -0.90 -26.47 11.58 55.49 0.64 -25.83 16 20 Si 0.90 22.22 29.60 -169.99 -5.03 17.19 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.14 3.17 6.06 -3.94 -0.02 3.14 16 25 H 0.10 0.75 6.05 -52.48 -0.32 0.43 16 26 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 27 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.46 6.17 -51.93 -0.32 0.14 16 30 H 0.07 0.46 6.67 -51.92 -0.35 0.11 16 31 H 0.12 1.49 8.05 -52.49 -0.42 1.07 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 0.81 5.72 -51.93 -0.30 0.51 16 34 H 0.39 4.11 8.60 -40.82 -0.35 3.76 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.70 8.14 -51.94 -0.42 0.28 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 2.11 6.35 -51.93 -0.33 1.78 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -33.04 347.15 -8.41 -41.45 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.97 Total: 2.08 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.58 Total: -3.44 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.15 Total: -51.94 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.04 -8.41 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479908098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.137 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds