Wall clock time and date at job start Tue Mar 31 2020 00:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32864 * 1 3 3 C 1.47115 * 120.00365 * 2 1 4 4 C 1.50698 * 119.99758 * 359.97438 * 3 2 1 5 5 C 1.32878 * 119.99903 * 180.02562 * 3 2 1 6 6 C 1.50704 * 119.99664 * 174.52121 * 5 3 2 7 7 C 1.50699 * 109.46927 * 236.19907 * 6 5 3 8 8 O 1.21286 * 120.00077 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00344 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00308 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.49803 * 34.93982 * 10 9 7 12 12 C 1.53045 * 109.49437 * 154.99894 * 10 9 7 13 13 C 1.53039 * 109.53608 * 181.31739 * 12 10 9 14 14 C 1.53193 * 109.31397 * 298.63904 * 13 12 10 15 15 N 1.46923 * 108.77850 * 54.63133 * 14 13 12 16 16 C 1.36935 * 120.63241 * 126.36858 * 15 14 13 17 17 H 1.08000 * 120.00237 * 210.78208 * 16 15 14 18 18 C 1.38811 * 119.99902 * 30.78065 * 16 15 14 19 19 N 1.31621 * 119.99775 * 19.64546 * 18 16 15 20 20 Si 1.86800 * 120.00380 * 199.63740 * 18 16 15 21 21 H 1.48496 * 109.47533 * 265.01984 * 20 18 16 22 22 H 1.48500 * 109.47411 * 145.01507 * 20 18 16 23 23 H 1.48508 * 109.46809 * 25.01877 * 20 18 16 24 24 C 1.46924 * 118.73966 * 306.64876 * 15 14 13 25 25 H 1.08005 * 119.99873 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00839 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.99873 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47129 * 264.66250 * 4 3 2 29 29 H 1.08995 * 109.47553 * 24.67135 * 4 3 2 30 30 H 1.09010 * 109.46755 * 144.66481 * 4 3 2 31 31 H 1.07997 * 119.99870 * 354.52092 * 5 3 2 32 32 H 1.08994 * 109.47078 * 116.20058 * 6 5 3 33 33 H 1.09000 * 109.46882 * 356.19630 * 6 5 3 34 34 H 0.97003 * 119.99382 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.45744 * 61.30233 * 12 10 9 36 36 H 1.08989 * 109.46319 * 301.33616 * 12 10 9 37 37 H 1.08996 * 109.50238 * 178.68823 * 13 12 10 38 38 H 1.09005 * 109.49725 * 58.58584 * 13 12 10 39 39 H 1.08998 * 109.58634 * 294.84601 * 14 13 12 40 40 H 1.09004 * 109.71013 * 174.49217 * 14 13 12 41 41 H 0.96998 * 119.99909 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58885 * 173.13889 * 24 15 14 43 43 H 1.09000 * 109.58719 * 293.56464 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5791 -0.0006 5 6 3.3931 1.2739 -0.0005 6 6 4.1466 2.5731 -0.1251 7 6 5.0818 2.5002 -1.3046 8 8 5.1312 1.4927 -1.9780 9 7 5.8633 3.5546 -1.6112 10 6 6.7728 3.4835 -2.7574 11 1 6.3132 2.8937 -3.5505 12 6 7.0579 4.8965 -3.2715 13 6 7.9818 4.8213 -4.4893 14 6 9.3105 4.1790 -4.0783 15 7 9.0335 2.8801 -3.4499 16 6 9.6447 1.7415 -3.9026 17 1 9.1369 0.7910 -3.8311 18 6 10.9171 1.8089 -4.4535 19 7 11.6881 2.8460 -4.2039 20 14 11.5351 0.4277 -5.5489 21 1 12.3227 -0.5338 -4.7364 22 1 12.3954 0.9922 -6.6195 23 1 10.3781 -0.2734 -6.1617 24 6 8.0835 2.8252 -2.3304 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8686 -0.9354 -0.0004 28 1 1.2124 2.9413 -1.0239 29 1 0.3203 2.4270 0.4280 30 1 1.8551 3.3131 0.5939 31 1 3.9330 0.3428 0.0884 32 1 4.7215 2.7483 0.7841 33 1 3.4402 3.3902 -0.2715 34 1 5.8235 4.3605 -1.0728 35 1 7.5395 5.4785 -2.4858 36 1 6.1210 5.3755 -3.5557 37 1 8.1657 5.8263 -4.8691 38 1 7.5114 4.2186 -5.2662 39 1 9.8250 4.8262 -3.3680 40 1 9.9361 4.0328 -4.9589 41 1 12.5771 2.8932 -4.5891 42 1 7.8975 1.7859 -2.0596 43 1 8.4958 3.3598 -1.4747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479908098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:25 Heat of formation + Delta-G solvation = -14.524273 kcal Electronic energy + Delta-G solvation = -21516.459437 eV Core-core repulsion = 18368.618459 eV Total energy + Delta-G solvation = -3147.840978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98396 -39.08390 -37.73591 -35.89216 -34.19187 -33.36537 -32.34699 -30.73099 -29.28093 -27.40124 -27.23274 -23.95216 -23.83803 -22.12809 -21.28821 -20.70103 -18.79632 -18.69072 -18.07769 -17.17756 -16.99211 -16.60723 -16.11701 -15.71867 -15.25441 -15.16462 -14.91933 -14.71644 -14.28732 -14.08644 -14.05082 -13.74854 -13.44725 -13.23759 -13.04801 -12.75339 -12.59720 -12.48233 -12.27668 -12.15783 -12.00186 -11.76745 -11.72891 -11.57202 -11.38532 -11.30356 -10.82272 -10.64067 -10.07873 -9.10911 -8.68873 -7.94675 -5.40928 0.43748 1.41504 1.42861 1.54675 1.71832 2.03386 2.37463 2.51551 3.19123 3.69437 3.75102 3.85572 3.97622 4.05511 4.11451 4.24925 4.35212 4.44571 4.45849 4.49444 4.57963 4.63370 4.80115 4.82611 4.90715 4.91654 5.01235 5.02180 5.11843 5.14431 5.18969 5.27313 5.45158 5.49012 5.56449 5.60619 5.61512 5.71949 5.80030 6.06139 6.34575 6.67931 7.10157 7.39022 7.79429 8.31280 9.11111 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.003511 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.535330 B = 7972.110091 C = 8779.754537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.147 4.147 3 C -0.108 4.108 4 C -0.124 4.124 5 C -0.145 4.145 6 C -0.102 4.102 7 C 0.507 3.493 8 O -0.591 6.591 9 N -0.709 5.709 10 C 0.140 3.860 11 H 0.052 0.948 12 C -0.103 4.103 13 C -0.130 4.130 14 C 0.174 3.826 15 N -0.607 5.607 16 C -0.274 4.274 17 H 0.048 0.952 18 C -0.039 4.039 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.283 1.283 22 H -0.282 1.282 23 H -0.276 1.276 24 C 0.146 3.854 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.418 0.582 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.008 0.992 40 H 0.045 0.955 41 H 0.254 0.746 42 H 0.025 0.975 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.888 6.036 9.847 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.108 4.108 4 C -0.180 4.180 5 C -0.163 4.163 6 C -0.141 4.141 7 C 0.295 3.705 8 O -0.471 6.471 9 N -0.361 5.361 10 C 0.034 3.966 11 H 0.070 0.930 12 C -0.141 4.141 13 C -0.170 4.170 14 C 0.048 3.952 15 N -0.331 5.331 16 C -0.404 4.404 17 H 0.066 0.934 18 C -0.235 4.235 19 N -0.570 5.570 20 Si 0.790 3.210 21 H -0.210 1.210 22 H -0.208 1.208 23 H -0.201 1.201 24 C 0.019 3.981 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.255 0.745 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.026 0.974 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -20.687 5.368 9.325 23.318 hybrid contribution 1.098 -0.973 -0.451 1.535 sum -19.589 4.395 8.873 21.949 Atomic orbital electron populations 1.24647 0.95036 1.03302 0.97825 1.22003 0.96223 0.96122 1.02204 1.20846 0.93721 0.95612 1.00625 1.20975 1.00764 0.93454 1.02792 1.22765 0.94515 0.97787 1.01271 1.20800 0.98137 0.98596 0.96531 1.21362 0.80612 0.82343 0.86175 1.90723 1.69438 1.32843 1.54125 1.45919 1.40474 1.18021 1.31726 1.21120 0.89312 0.98138 0.88065 0.92998 1.21597 1.00333 0.93952 0.98187 1.22014 0.96540 1.00856 0.97550 1.20660 0.93862 0.84783 0.95846 1.44184 1.48962 1.04798 1.35150 1.19313 0.96587 0.88214 1.36335 0.93437 1.25762 0.95199 1.00064 1.02503 1.70187 1.08392 1.32779 1.45641 0.85349 0.77816 0.79025 0.78795 1.20976 1.20810 1.20102 1.21127 0.89737 0.97386 0.89867 0.86616 0.86937 0.87739 0.91283 0.90226 0.89461 0.88892 0.85386 0.85029 0.74487 0.90391 0.89308 0.89507 0.93511 0.97419 0.93649 0.93742 0.95659 0.96134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 14.12 66.64 0.94 -1.59 16 2 C -0.15 -2.88 9.83 23.43 0.23 -2.65 16 3 C -0.11 -2.13 5.98 -18.71 -0.11 -2.24 16 4 C -0.12 -1.61 8.56 71.24 0.61 -1.00 16 5 C -0.14 -3.33 8.45 24.51 0.21 -3.12 16 6 C -0.10 -1.89 5.81 29.10 0.17 -1.72 16 7 C 0.51 14.91 7.79 87.66 0.68 15.59 16 8 O -0.59 -24.61 15.70 -3.05 -0.05 -24.66 16 9 N -0.71 -18.67 5.08 -442.85 -2.25 -20.92 16 10 C 0.14 5.00 2.59 44.93 0.12 5.11 16 11 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.10 -3.00 5.36 30.62 0.16 -2.83 16 13 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 14 C 0.17 8.36 5.32 86.36 0.46 8.82 16 15 N -0.61 -32.37 2.98 -699.94 -2.09 -34.45 16 16 C -0.27 -16.34 9.53 84.03 0.80 -15.54 16 17 H 0.05 2.92 7.90 -2.91 -0.02 2.89 16 18 C -0.04 -2.25 4.82 84.86 0.41 -1.84 16 19 N -0.93 -55.80 11.58 21.65 0.25 -55.55 16 20 Si 0.96 46.88 29.60 68.60 2.03 48.91 16 21 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 C 0.15 6.63 6.06 86.22 0.52 7.15 16 25 H 0.12 1.34 6.05 -2.91 -0.02 1.32 16 26 H 0.11 1.34 8.06 -2.91 -0.02 1.31 16 27 H 0.10 2.15 8.06 -2.91 -0.02 2.12 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.82 6.17 -2.39 -0.01 0.80 16 30 H 0.09 0.81 6.67 -2.38 -0.02 0.79 16 31 H 0.09 2.54 8.05 -2.91 -0.02 2.52 16 32 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.13 1.60 5.72 -2.39 -0.01 1.59 16 34 H 0.42 7.17 8.60 -92.71 -0.80 6.37 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 40 H 0.04 2.47 6.35 -2.38 -0.02 2.45 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.02 1.27 7.93 -2.39 -0.02 1.25 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -76.80 347.15 3.47 -73.33 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.19 Total: 13.67 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.39 Total: -0.32 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -4.08 Total: -110.92 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -76.80 3.47 -73.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479908098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.801 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds