Wall clock time and date at job start Mon Mar 30 2020 23:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99879 * 2 1 4 4 C 1.52996 * 109.47040 * 124.99675 * 3 2 1 5 5 C 1.50706 * 109.47040 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99755 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00068 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00229 * 179.97438 * 7 5 4 9 9 C 1.53142 * 109.43516 * 119.87378 * 8 7 5 10 10 C 1.53700 * 108.87562 * 66.17871 * 9 8 7 11 11 H 1.08998 * 112.58520 * 187.92504 * 10 9 8 12 12 C 1.54604 * 107.83371 * 312.23009 * 10 9 8 13 13 C 1.54304 * 104.75373 * 88.66368 * 12 10 9 14 14 C 1.54609 * 104.75310 * 0.02562 * 13 12 10 15 15 H 1.08995 * 112.69558 * 147.07312 * 14 13 12 16 16 C 1.53144 * 109.43621 * 240.10089 * 8 7 5 17 17 N 1.48298 * 104.25957 * 25.13596 * 14 13 12 18 18 C 1.36930 * 128.21065 * 138.36205 * 17 14 13 19 19 H 1.08002 * 119.99952 * 192.94718 * 18 17 14 20 20 C 1.38815 * 119.99875 * 12.94867 * 18 17 14 21 21 N 1.31615 * 120.00056 * 4.63024 * 20 18 17 22 22 Si 1.86800 * 119.99706 * 184.62889 * 20 18 17 23 23 H 1.48497 * 109.47088 * 94.98536 * 22 20 18 24 24 H 1.48504 * 109.46879 * 214.98031 * 22 20 18 25 25 H 1.48497 * 109.47455 * 334.98304 * 22 20 18 26 26 H 1.07997 * 119.99987 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99827 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99827 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46988 * 4.99567 * 3 2 1 30 30 H 1.08997 * 109.46862 * 244.99618 * 3 2 1 31 31 H 1.08996 * 109.47319 * 60.00094 * 4 3 2 32 32 H 1.09006 * 109.47062 * 299.99596 * 4 3 2 33 33 H 0.97002 * 119.99939 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.43124 * 0.02562 * 8 7 5 35 35 H 1.09001 * 109.57346 * 306.36089 * 9 8 7 36 36 H 1.09002 * 109.57342 * 185.99489 * 9 8 7 37 37 H 1.09007 * 110.38294 * 207.48641 * 12 10 9 38 38 H 1.09003 * 110.38032 * 329.84241 * 12 10 9 39 39 H 1.09001 * 110.38508 * 118.81985 * 13 12 10 40 40 H 1.08996 * 110.38818 * 241.17970 * 13 12 10 41 41 H 1.09001 * 109.56973 * 174.00072 * 16 8 7 42 42 H 1.09004 * 109.67024 * 53.70326 * 16 8 7 43 43 H 0.96999 * 120.00250 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7889 2.6381 1.1813 6 8 3.5710 3.4641 0.3203 7 7 4.7053 2.8872 2.1376 8 6 5.4386 4.1554 2.1370 9 6 5.1621 4.9046 3.4437 10 6 5.7656 4.1075 4.6111 11 1 5.4866 4.5132 5.5836 12 6 5.3355 2.6313 4.4490 13 6 6.4303 1.9978 3.5653 14 6 7.4196 3.1505 3.2770 15 1 8.4503 2.8077 3.1876 16 6 6.9390 3.8764 2.0096 17 7 7.2357 4.0830 4.4154 18 6 8.1955 4.7603 5.1189 19 1 7.9423 5.2414 6.0522 20 6 9.4939 4.8288 4.6326 21 7 9.7823 4.3217 3.4528 22 14 10.8317 5.6405 5.6528 23 1 11.5558 4.6054 6.4333 24 1 11.7848 6.3391 4.7533 25 1 10.2181 6.6225 6.5825 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 3.7399 0.5067 1.0922 32 1 2.4771 1.2358 2.1131 33 1 4.8798 2.2264 2.8260 34 1 5.1099 4.7639 1.2946 35 1 4.0862 5.0039 3.5871 36 1 5.6194 5.8931 3.4017 37 1 5.2987 2.1377 5.4202 38 1 4.3660 2.5706 3.9544 39 1 6.9323 1.1925 4.1016 40 1 5.9997 1.6253 2.6359 41 1 7.4776 4.8179 1.9018 42 1 7.1228 3.2489 1.1375 43 1 10.6896 4.3691 3.1131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480176991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:49 Heat of formation + Delta-G solvation = 72.194375 kcal Electronic energy + Delta-G solvation = -22883.808558 eV Core-core repulsion = 19739.727983 eV Total energy + Delta-G solvation = -3144.080575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03863 -38.50182 -35.44053 -34.14924 -32.16341 -31.57110 -30.51449 -30.15556 -28.92233 -25.08801 -24.01551 -23.30943 -21.41196 -20.24261 -19.91310 -19.59357 -19.09660 -17.33772 -16.68708 -15.77046 -14.99622 -14.83498 -14.80793 -14.20701 -13.79847 -13.42262 -13.17682 -12.93941 -12.79960 -12.71089 -12.23135 -12.01722 -11.96881 -11.66000 -11.54962 -11.13652 -11.10303 -10.98063 -10.91005 -10.66813 -10.37518 -10.28735 -9.99595 -9.76994 -9.59720 -9.49518 -9.37445 -9.26333 -8.66908 -8.15374 -6.87159 -5.77623 -3.15682 2.10597 2.99297 3.36165 3.42298 3.43912 3.71583 4.42955 4.76935 4.87331 5.06333 5.13808 5.19690 5.30628 5.33729 5.43252 5.54907 5.63713 5.64966 5.69798 5.79266 5.85847 5.88978 6.00202 6.01821 6.09582 6.17762 6.31488 6.46408 6.53131 6.54508 6.58668 6.61913 6.65087 6.79108 6.88191 6.99909 7.15105 7.48734 7.55034 7.73363 7.96902 8.22308 8.63865 9.10694 9.72170 10.48983 11.32191 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042466 B = 0.004031 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.190922 B = 6944.469802 C = 7011.347432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.079 4.079 4 C -0.138 4.138 5 C 0.493 3.507 6 O -0.559 6.559 7 N -0.737 5.737 8 C 0.141 3.859 9 C -0.137 4.137 10 C 0.149 3.851 11 H 0.068 0.932 12 C -0.162 4.162 13 C -0.173 4.173 14 C 0.175 3.825 15 H 0.124 0.876 16 C -0.124 4.124 17 N -0.584 5.584 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.427 0.573 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.908 -8.206 -2.659 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.116 4.116 4 C -0.178 4.178 5 C 0.279 3.721 6 O -0.438 6.438 7 N -0.409 5.409 8 C 0.037 3.963 9 C -0.177 4.177 10 C 0.041 3.959 11 H 0.086 0.914 12 C -0.201 4.201 13 C -0.213 4.213 14 C 0.068 3.932 15 H 0.141 0.859 16 C -0.165 4.165 17 N -0.305 5.305 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.287 0.713 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.748 -7.562 -3.170 15.158 hybrid contribution 0.751 0.138 0.736 1.060 sum -11.998 -7.424 -2.434 14.317 Atomic orbital electron populations 1.23856 0.95997 1.01750 1.01862 1.23034 0.96092 0.98537 0.99283 1.20487 0.97812 0.95068 0.98253 1.21636 0.99024 0.96398 1.00785 1.20864 0.80490 0.88693 0.82032 1.90638 1.66724 1.48369 1.38113 1.49100 1.39288 1.21883 1.30665 1.21062 0.92761 0.84382 0.98104 1.22482 0.98796 1.00128 0.96304 1.21534 0.86591 0.92135 0.95616 0.91427 1.23281 0.97946 0.99143 0.99751 1.23431 0.98561 1.00787 0.98476 1.21741 0.98879 0.86658 0.85929 0.85851 1.22379 0.92581 1.02529 0.98966 1.45193 0.98951 1.49898 1.36485 1.19031 0.88320 1.26593 1.00984 0.90585 1.24818 0.97862 1.01091 0.96535 1.69755 1.19040 1.50070 1.17300 0.86097 0.81807 0.78831 0.78988 1.21724 1.21735 1.20679 0.88651 0.88577 0.87368 0.90823 0.90219 0.89090 0.89223 0.71337 0.90067 0.93414 0.90946 0.92183 0.90377 0.92250 0.90534 0.90199 0.93790 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 14.32 29.01 0.42 -1.26 16 2 C -0.15 -1.38 9.52 -36.02 -0.34 -1.72 16 3 C -0.08 -0.87 4.95 -27.88 -0.14 -1.01 16 4 C -0.14 -1.54 5.68 -27.88 -0.16 -1.70 16 5 C 0.49 7.68 7.83 -10.98 -0.09 7.60 16 6 O -0.56 -10.78 15.31 5.56 0.09 -10.69 16 7 N -0.74 -11.65 2.77 -53.66 -0.15 -11.80 16 8 C 0.14 2.63 3.15 -67.78 -0.21 2.42 16 9 C -0.14 -2.53 5.49 -26.29 -0.14 -2.67 16 10 C 0.15 2.89 4.32 -65.72 -0.28 2.61 16 11 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 12 C -0.16 -2.61 5.76 -25.21 -0.15 -2.76 16 13 C -0.17 -3.00 5.76 -25.20 -0.15 -3.15 16 14 C 0.17 3.84 3.23 -65.70 -0.21 3.63 16 15 H 0.12 3.15 5.97 -51.93 -0.31 2.84 16 16 C -0.12 -2.61 5.49 -26.26 -0.14 -2.75 16 17 N -0.58 -13.76 2.83 -152.71 -0.43 -14.20 16 18 C -0.22 -5.81 10.40 -15.06 -0.16 -5.97 16 19 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.18 5.47 -17.43 -0.10 -0.27 16 21 N -0.91 -25.21 10.53 55.49 0.58 -24.63 16 22 Si 0.91 21.35 29.56 -169.99 -5.02 16.33 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 27 H 0.10 0.80 7.84 -52.49 -0.41 0.39 16 28 H 0.11 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 30 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.43 6.15 1.90 -65.44 -0.12 6.02 16 34 H 0.08 1.63 6.90 -51.93 -0.36 1.27 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.11 5.27 -51.93 -0.27 0.83 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.19 5.26 -51.93 -0.27 0.91 16 41 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -29.23 328.21 -8.61 -37.84 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.77 Total: 9.21 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.85 Total: -7.01 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.00 Total: -50.62 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.23 -8.61 -37.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480176991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.033 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds