Wall clock time and date at job start Mon Mar 30 2020 23:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99879 * 2 1 4 4 C 1.52996 * 109.47040 * 124.99675 * 3 2 1 5 5 C 1.50706 * 109.47040 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99755 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00068 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00229 * 179.97438 * 7 5 4 9 9 C 1.53142 * 109.43516 * 119.87378 * 8 7 5 10 10 C 1.53700 * 108.87562 * 66.17871 * 9 8 7 11 11 H 1.08998 * 112.58520 * 187.92504 * 10 9 8 12 12 C 1.54604 * 107.83371 * 312.23009 * 10 9 8 13 13 C 1.54304 * 104.75373 * 88.66368 * 12 10 9 14 14 C 1.54609 * 104.75310 * 0.02562 * 13 12 10 15 15 H 1.08995 * 112.69558 * 147.07312 * 14 13 12 16 16 C 1.53144 * 109.43621 * 240.10089 * 8 7 5 17 17 N 1.48298 * 104.25957 * 25.13596 * 14 13 12 18 18 C 1.36930 * 128.21065 * 138.36205 * 17 14 13 19 19 H 1.08002 * 119.99952 * 192.94718 * 18 17 14 20 20 C 1.38815 * 119.99875 * 12.94867 * 18 17 14 21 21 N 1.31615 * 120.00056 * 4.63024 * 20 18 17 22 22 Si 1.86800 * 119.99706 * 184.62889 * 20 18 17 23 23 H 1.48497 * 109.47088 * 94.98536 * 22 20 18 24 24 H 1.48504 * 109.46879 * 214.98031 * 22 20 18 25 25 H 1.48497 * 109.47455 * 334.98304 * 22 20 18 26 26 H 1.07997 * 119.99987 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99827 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99827 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46988 * 4.99567 * 3 2 1 30 30 H 1.08997 * 109.46862 * 244.99618 * 3 2 1 31 31 H 1.08996 * 109.47319 * 60.00094 * 4 3 2 32 32 H 1.09006 * 109.47062 * 299.99596 * 4 3 2 33 33 H 0.97002 * 119.99939 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.43124 * 0.02562 * 8 7 5 35 35 H 1.09001 * 109.57346 * 306.36089 * 9 8 7 36 36 H 1.09002 * 109.57342 * 185.99489 * 9 8 7 37 37 H 1.09007 * 110.38294 * 207.48641 * 12 10 9 38 38 H 1.09003 * 110.38032 * 329.84241 * 12 10 9 39 39 H 1.09001 * 110.38508 * 118.81985 * 13 12 10 40 40 H 1.08996 * 110.38818 * 241.17970 * 13 12 10 41 41 H 1.09001 * 109.56973 * 174.00072 * 16 8 7 42 42 H 1.09004 * 109.67024 * 53.70326 * 16 8 7 43 43 H 0.96999 * 120.00250 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7889 2.6381 1.1813 6 8 3.5710 3.4641 0.3203 7 7 4.7053 2.8872 2.1376 8 6 5.4386 4.1554 2.1370 9 6 5.1621 4.9046 3.4437 10 6 5.7656 4.1075 4.6111 11 1 5.4866 4.5132 5.5836 12 6 5.3355 2.6313 4.4490 13 6 6.4303 1.9978 3.5653 14 6 7.4196 3.1505 3.2770 15 1 8.4503 2.8077 3.1876 16 6 6.9390 3.8764 2.0096 17 7 7.2357 4.0830 4.4154 18 6 8.1955 4.7603 5.1189 19 1 7.9423 5.2414 6.0522 20 6 9.4939 4.8288 4.6326 21 7 9.7823 4.3217 3.4528 22 14 10.8317 5.6405 5.6528 23 1 11.5558 4.6054 6.4333 24 1 11.7848 6.3391 4.7533 25 1 10.2181 6.6225 6.5825 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 3.7399 0.5067 1.0922 32 1 2.4771 1.2358 2.1131 33 1 4.8798 2.2264 2.8260 34 1 5.1099 4.7639 1.2946 35 1 4.0862 5.0039 3.5871 36 1 5.6194 5.8931 3.4017 37 1 5.2987 2.1377 5.4202 38 1 4.3660 2.5706 3.9544 39 1 6.9323 1.1925 4.1016 40 1 5.9997 1.6253 2.6359 41 1 7.4776 4.8179 1.9018 42 1 7.1228 3.2489 1.1375 43 1 10.6896 4.3691 3.1131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480176991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:48 Heat of formation + Delta-G solvation = 56.524838 kcal Electronic energy + Delta-G solvation = -22884.488040 eV Core-core repulsion = 19739.727983 eV Total energy + Delta-G solvation = -3144.760057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.51164 -39.84830 -36.28821 -35.77627 -33.91201 -32.93917 -31.95317 -31.42665 -30.56260 -26.66104 -25.28523 -24.84768 -22.94127 -21.60140 -21.14708 -20.68959 -20.57206 -18.96479 -18.07974 -16.87046 -16.62554 -16.26478 -16.01327 -15.67008 -15.12937 -14.71938 -14.54732 -14.46837 -14.41774 -13.86054 -13.74559 -13.39652 -13.25006 -13.16438 -12.95181 -12.79965 -12.62859 -12.40711 -12.02582 -11.95351 -11.93317 -11.81000 -11.68782 -11.43191 -11.16651 -11.00686 -10.72435 -10.56029 -10.15240 -9.59027 -8.76100 -7.78789 -5.16868 1.45120 1.48131 1.48833 1.57126 1.77104 2.46451 2.51502 3.36140 3.56515 3.82563 3.94531 3.98718 4.04815 4.19101 4.23730 4.28889 4.30486 4.41629 4.47852 4.52321 4.53770 4.71163 4.75312 4.82012 4.96616 4.98977 5.03287 5.11284 5.11778 5.15557 5.27101 5.28853 5.29693 5.45663 5.55803 5.62329 5.80405 5.84020 5.87562 5.96697 6.32747 6.69903 7.12226 7.39470 7.78549 8.56862 9.28964 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042466 B = 0.004031 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.190922 B = 6944.469802 C = 7011.347432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C -0.077 4.077 4 C -0.130 4.130 5 C 0.490 3.510 6 O -0.599 6.599 7 N -0.728 5.728 8 C 0.153 3.847 9 C -0.129 4.129 10 C 0.140 3.860 11 H 0.073 0.927 12 C -0.149 4.149 13 C -0.163 4.163 14 C 0.167 3.833 15 H 0.084 0.916 16 C -0.114 4.114 17 N -0.606 5.606 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.061 4.061 21 N -0.938 5.938 22 Si 0.971 3.029 23 H -0.289 1.289 24 H -0.300 1.300 25 H -0.272 1.272 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.435 0.565 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.036 0.964 42 H 0.044 0.956 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.201 -10.275 -1.639 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C -0.115 4.115 4 C -0.169 4.169 5 C 0.279 3.721 6 O -0.481 6.481 7 N -0.402 5.402 8 C 0.047 3.953 9 C -0.170 4.170 10 C 0.033 3.967 11 H 0.091 0.909 12 C -0.188 4.188 13 C -0.202 4.202 14 C 0.060 3.940 15 H 0.101 0.899 16 C -0.155 4.155 17 N -0.328 5.328 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.254 4.254 21 N -0.587 5.587 22 Si 0.800 3.200 23 H -0.216 1.216 24 H -0.227 1.227 25 H -0.197 1.197 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.144 0.856 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.297 0.703 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.081 -9.658 -2.126 18.035 hybrid contribution 1.412 0.826 0.371 1.677 sum -13.669 -8.833 -1.755 16.369 Atomic orbital electron populations 1.24036 0.95988 1.02462 1.00662 1.23003 0.96228 0.98020 1.00290 1.20431 0.97566 0.95888 0.97633 1.21694 0.99181 0.94006 1.02050 1.21710 0.79886 0.89790 0.80709 1.90634 1.67788 1.50141 1.39523 1.48944 1.39194 1.20760 1.31277 1.20683 0.91175 0.85739 0.97661 1.22383 1.00016 0.98709 0.95855 1.21799 0.84222 0.94675 0.95981 0.90917 1.23198 0.98472 0.96220 1.00867 1.23317 0.97869 0.98982 1.00031 1.21629 0.98247 0.88242 0.85851 0.89858 1.22191 0.94079 1.00282 0.98901 1.45407 1.00601 1.50177 1.36582 1.19334 0.89184 1.26029 1.01145 0.90494 1.25513 0.99828 1.02450 0.97652 1.69977 1.18612 1.51477 1.18611 0.85171 0.79272 0.77965 0.77556 1.21641 1.22709 1.19728 0.86936 0.88966 0.85633 0.92335 0.91859 0.86471 0.86453 0.70321 0.91651 0.90839 0.93501 0.90335 0.87428 0.91616 0.88181 0.94541 0.93707 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 14.32 67.78 0.97 -1.75 16 2 C -0.16 -2.36 9.52 25.65 0.24 -2.12 16 3 C -0.08 -1.54 4.95 29.85 0.15 -1.39 16 4 C -0.13 -2.39 5.68 29.85 0.17 -2.22 16 5 C 0.49 14.06 7.83 87.66 0.69 14.75 16 6 O -0.60 -22.58 15.31 -3.04 -0.05 -22.62 16 7 N -0.73 -21.10 2.77 -442.08 -1.23 -22.32 16 8 C 0.15 5.63 3.15 45.09 0.14 5.77 16 9 C -0.13 -4.67 5.49 30.88 0.17 -4.50 16 10 C 0.14 5.20 4.32 45.42 0.20 5.39 16 11 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 12 C -0.15 -4.24 5.76 31.58 0.18 -4.06 16 13 C -0.16 -5.25 5.76 31.58 0.18 -5.07 16 14 C 0.17 7.41 3.23 45.45 0.15 7.56 16 15 H 0.08 4.41 5.97 -2.39 -0.01 4.40 16 16 C -0.11 -4.93 5.49 30.90 0.17 -4.76 16 17 N -0.61 -28.70 2.83 -637.06 -1.80 -30.50 16 18 C -0.23 -12.15 10.40 84.04 0.87 -11.28 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.06 -3.33 5.47 84.86 0.46 -2.87 16 21 N -0.94 -53.90 10.53 21.65 0.23 -53.68 16 22 Si 0.97 44.91 29.56 68.60 2.03 46.93 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H 0.11 1.19 8.06 -2.91 -0.02 1.16 16 27 H 0.09 1.34 7.84 -2.91 -0.02 1.32 16 28 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 29 H 0.06 1.32 7.75 -2.39 -0.02 1.30 16 30 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 31 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.43 10.81 1.90 -115.83 -0.22 10.59 16 34 H 0.07 2.65 6.90 -2.39 -0.02 2.64 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.11 2.49 5.27 -2.39 -0.01 2.48 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.10 2.76 5.26 -2.39 -0.01 2.74 16 41 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -66.50 328.21 4.69 -61.80 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.77 Total: 26.91 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.74 Total: -6.52 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -2.80 Total: -106.50 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.50 4.69 -61.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480176991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.327 kcal (2) G-P(sol) polarization free energy of solvation -66.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds