Wall clock time and date at job start Mon Mar 30 2020 23:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32993 * 119.99871 * 2 1 4 4 C 1.50706 * 120.00117 * 0.02562 * 3 2 1 5 5 C 1.47104 * 120.00061 * 179.97438 * 3 2 1 6 6 O 1.21608 * 119.99692 * 359.97438 * 5 3 2 7 7 N 1.34775 * 120.00015 * 179.97438 * 5 3 2 8 8 C 1.46494 * 120.00186 * 179.97438 * 7 5 3 9 9 C 1.53153 * 109.43643 * 275.22674 * 8 7 5 10 10 C 1.54248 * 108.84255 * 185.94977 * 9 8 7 11 11 H 1.09004 * 112.33104 * 187.69005 * 10 9 8 12 12 C 1.54610 * 107.85948 * 312.47295 * 10 9 8 13 13 C 1.53794 * 104.85159 * 88.47002 * 12 10 9 14 14 C 1.54611 * 104.84994 * 0.02562 * 13 12 10 15 15 H 1.08996 * 112.69669 * 146.96207 * 14 13 12 16 16 C 1.53140 * 109.43673 * 155.00056 * 8 7 5 17 17 N 1.48287 * 106.99361 * 64.12936 * 10 9 8 18 18 C 1.36940 * 128.21169 * 107.52939 * 17 10 9 19 19 H 1.07999 * 120.00269 * 205.65180 * 18 17 10 20 20 C 1.38809 * 119.99879 * 25.64235 * 18 17 10 21 21 N 1.31622 * 120.00417 * 196.13935 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 16.14671 * 20 18 17 23 23 H 1.48506 * 109.46731 * 268.67301 * 22 20 18 24 24 H 1.48503 * 109.47349 * 28.67094 * 22 20 18 25 25 H 1.48501 * 109.47142 * 148.67669 * 22 20 18 26 26 H 1.09001 * 109.46885 * 60.00517 * 1 2 3 27 27 H 1.08999 * 109.47138 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47507 * 299.99953 * 1 2 3 29 29 H 1.08002 * 120.00132 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46359 * 270.00033 * 4 3 2 31 31 H 1.08997 * 109.46799 * 29.99479 * 4 3 2 32 32 H 1.08993 * 109.47532 * 150.00048 * 4 3 2 33 33 H 0.97000 * 120.00118 * 0.02562 * 7 5 3 34 34 H 1.09008 * 109.43200 * 35.09056 * 8 7 5 35 35 H 1.08997 * 109.56349 * 305.85568 * 9 8 7 36 36 H 1.08999 * 109.57110 * 66.22207 * 9 8 7 37 37 H 1.09002 * 110.38292 * 207.18004 * 12 10 9 38 38 H 1.09001 * 110.37848 * 329.42792 * 12 10 9 39 39 H 1.09000 * 110.43236 * 241.10285 * 13 12 10 40 40 H 1.09005 * 110.23860 * 118.80063 * 13 12 10 41 41 H 1.09005 * 109.57310 * 54.14167 * 16 8 7 42 42 H 1.09006 * 109.67326 * 293.83963 * 16 8 7 43 43 H 0.96994 * 120.00494 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6430 1.1518 0.0006 6 8 4.2510 0.0986 0.0015 7 7 4.3168 2.3190 0.0000 8 6 5.7818 2.3191 0.0012 9 6 6.2903 2.1889 1.4399 10 6 7.8253 2.3409 1.4415 11 1 8.2619 2.1251 2.4166 12 6 8.3922 1.4385 0.3213 13 6 8.3894 2.3230 -0.9368 14 6 7.8216 3.6815 -0.4648 15 1 8.2548 4.5269 -0.9992 16 6 6.2918 3.6274 -0.6099 17 7 8.1247 3.7200 0.9861 18 6 8.5795 4.7771 1.7283 19 1 8.3731 5.7885 1.4106 20 6 9.3055 4.5488 2.8891 21 7 9.4703 5.5184 3.7639 22 14 10.0491 2.8654 3.2098 23 1 9.0858 2.0372 3.9789 24 1 10.3491 2.2020 1.9155 25 1 11.3033 3.0187 3.9900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.0470 -0.9353 0.0004 30 1 1.2364 2.7717 -1.0270 31 1 0.4662 2.3264 0.5147 32 1 2.0076 3.2165 0.5143 33 1 3.8318 3.1591 -0.0003 34 1 6.1449 1.4775 -0.5887 35 1 5.8439 2.9688 2.0568 36 1 6.0211 1.2094 1.8351 37 1 9.4091 1.1283 0.5619 38 1 7.7542 0.5666 0.1769 39 1 7.7490 1.8898 -1.7051 40 1 9.4049 2.4466 -1.3131 41 1 5.8455 4.4732 -0.0867 42 1 6.0235 3.6685 -1.6656 43 1 9.9779 5.3589 4.5748 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480177573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:52 Heat of formation + Delta-G solvation = 5.786704 kcal Electronic energy + Delta-G solvation = -22740.304130 eV Core-core repulsion = 19593.343903 eV Total energy + Delta-G solvation = -3146.960228 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.31118 -39.01083 -35.64310 -34.68223 -32.62921 -30.67361 -30.54908 -29.90209 -28.89502 -26.33272 -24.62160 -23.70002 -22.48083 -20.95425 -19.81237 -19.19388 -18.19183 -17.21654 -16.66930 -16.51224 -15.47016 -14.90094 -14.67405 -13.98093 -13.75942 -13.57561 -13.47491 -13.25802 -13.09057 -12.83325 -12.71388 -12.48961 -12.28867 -12.09365 -11.90493 -11.58212 -11.44753 -11.25639 -11.21961 -10.77311 -10.56027 -10.22747 -9.88963 -9.83077 -9.72613 -9.60120 -9.35145 -9.19572 -8.77586 -8.50185 -7.04661 -5.94793 -3.30889 1.32210 3.32882 3.36773 3.40000 3.48127 3.51504 4.53416 4.66751 4.75309 4.83671 4.98167 5.05909 5.21266 5.25362 5.26600 5.39235 5.43594 5.50701 5.60877 5.62899 5.68793 5.69263 5.75532 5.78650 5.82395 6.04924 6.08796 6.24209 6.28266 6.36678 6.41609 6.45780 6.51012 6.54159 6.63029 6.82399 6.86031 6.87873 6.98850 7.70217 7.74743 8.33152 8.40551 8.79271 9.66544 10.26831 11.21659 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.004679 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.211834 B = 5982.329201 C = 6067.787511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C -0.187 4.187 4 C -0.119 4.119 5 C 0.549 3.451 6 O -0.549 6.549 7 N -0.719 5.719 8 C 0.150 3.850 9 C -0.135 4.135 10 C 0.138 3.862 11 H 0.074 0.926 12 C -0.140 4.140 13 C -0.133 4.133 14 C 0.155 3.845 15 H 0.081 0.919 16 C -0.135 4.135 17 N -0.597 5.597 18 C -0.234 4.234 19 H 0.090 0.910 20 C 0.024 3.976 21 N -0.913 5.913 22 Si 0.881 3.119 23 H -0.288 1.288 24 H -0.261 1.261 25 H -0.305 1.305 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.397 0.603 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.543 -7.545 -9.858 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.103 4.103 3 C -0.190 4.190 4 C -0.175 4.175 5 C 0.337 3.663 6 O -0.428 6.428 7 N -0.369 5.369 8 C 0.047 3.953 9 C -0.176 4.176 10 C 0.031 3.969 11 H 0.092 0.908 12 C -0.178 4.178 13 C -0.172 4.172 14 C 0.047 3.953 15 H 0.099 0.901 16 C -0.175 4.175 17 N -0.320 5.320 18 C -0.362 4.362 19 H 0.108 0.892 20 C -0.175 4.175 21 N -0.557 5.557 22 Si 0.713 3.287 23 H -0.216 1.216 24 H -0.186 1.186 25 H -0.233 1.233 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.946 -8.067 -9.625 19.522 hybrid contribution 0.217 -0.516 0.474 0.734 sum -14.729 -8.584 -9.151 19.349 Atomic orbital electron populations 1.20969 0.92295 1.02858 1.02452 1.23530 0.96083 0.98015 0.92625 1.21524 0.93106 0.96694 1.07712 1.20834 1.00082 0.94233 1.02402 1.18386 0.87557 0.84012 0.76331 1.90763 1.70114 1.31297 1.50652 1.46261 1.08128 1.08191 1.74321 1.21179 0.77425 0.99231 0.97462 1.22600 0.98241 1.00891 0.95843 1.21898 0.92028 0.86537 0.96459 0.90839 1.22677 1.00931 0.98002 0.96231 1.22549 1.00682 0.97079 0.96851 1.21559 0.91242 0.95686 0.86815 0.90073 1.22486 0.99451 0.96509 0.99091 1.45502 1.76273 1.07551 1.02643 1.18607 1.27556 0.85960 1.04028 0.89196 1.25127 0.98229 0.96972 0.97134 1.69764 1.43413 1.32477 1.10017 0.86907 0.78321 0.85228 0.78254 1.21628 1.18567 1.23311 0.90912 0.91561 0.90752 0.85699 0.90987 0.91018 0.91563 0.76852 0.89383 0.91448 0.92773 0.92020 0.91671 0.92139 0.92134 0.91271 0.92474 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.91 36.01 0.32 -0.56 16 2 C -0.08 -0.85 9.84 -36.13 -0.36 -1.21 16 3 C -0.19 -2.15 6.00 -102.84 -0.62 -2.76 16 4 C -0.12 -0.98 9.14 36.01 0.33 -0.65 16 5 C 0.55 8.35 7.71 -12.66 -0.10 8.25 16 6 O -0.55 -10.33 15.88 5.27 0.08 -10.25 16 7 N -0.72 -10.30 5.02 -54.84 -0.28 -10.57 16 8 C 0.15 2.51 2.10 -67.78 -0.14 2.37 16 9 C -0.14 -2.65 5.22 -26.00 -0.14 -2.79 16 10 C 0.14 3.02 2.88 -65.45 -0.19 2.83 16 11 H 0.07 1.79 3.16 -51.93 -0.16 1.62 16 12 C -0.14 -2.67 5.72 -25.47 -0.15 -2.82 16 13 C -0.13 -2.28 5.96 -25.47 -0.15 -2.43 16 14 C 0.16 2.92 4.33 -65.71 -0.28 2.64 16 15 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 16 C -0.14 -2.18 5.09 -26.26 -0.13 -2.31 16 17 N -0.60 -13.98 2.53 -152.42 -0.39 -14.36 16 18 C -0.23 -6.49 10.77 -15.06 -0.16 -6.65 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 20 C 0.02 0.70 5.49 -17.43 -0.10 0.61 16 21 N -0.91 -28.09 13.97 55.49 0.78 -27.32 16 22 Si 0.88 22.64 24.66 -169.99 -4.19 18.45 16 23 H -0.29 -7.34 6.69 56.52 0.38 -6.96 16 24 H -0.26 -6.40 5.27 56.52 0.30 -6.10 16 25 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 26 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.45 7.40 -51.93 -0.38 0.07 16 29 H 0.13 1.44 7.49 -52.49 -0.39 1.05 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.49 6.49 -51.93 -0.34 0.15 16 32 H 0.07 0.54 6.70 -51.93 -0.35 0.19 16 33 H 0.40 4.69 6.70 -40.82 -0.27 4.42 16 34 H 0.09 1.56 4.97 -51.92 -0.26 1.30 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.21 6.77 -51.93 -0.35 0.86 16 38 H 0.06 1.16 7.06 -51.93 -0.37 0.79 16 39 H 0.06 0.91 7.04 -51.93 -0.37 0.54 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -32.54 323.66 -7.71 -40.25 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.73 Total: 4.42 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.86 Total: -5.49 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.11 Total: -52.25 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.19 Total: 18.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.54 -7.71 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480177573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.033 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds