Wall clock time and date at job start Tue Mar 31 2020 00:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32998 * 120.00106 * 2 1 4 4 C 1.47097 * 119.99787 * 352.08374 * 3 2 1 5 5 O 1.21617 * 120.00413 * 1.86586 * 4 3 2 6 6 N 1.34779 * 120.00000 * 181.86552 * 4 3 2 7 7 C 1.47427 * 125.64842 * 5.42706 * 6 4 3 8 8 C 1.54906 * 104.83309 * 155.83305 * 7 6 4 9 9 C 1.55154 * 101.58156 * 37.00915 * 8 7 6 10 10 C 1.47029 * 125.64924 * 185.38128 * 6 4 3 11 11 H 1.09001 * 109.87555 * 300.66653 * 10 6 4 12 12 C 1.52992 * 109.88259 * 61.67834 * 10 6 4 13 13 N 1.46498 * 109.47204 * 184.35543 * 12 10 6 14 14 C 1.36936 * 120.00403 * 175.05397 * 13 12 10 15 15 H 1.08005 * 119.99944 * 5.14203 * 14 13 12 16 16 C 1.38810 * 120.00436 * 185.14393 * 14 13 12 17 17 N 1.31612 * 119.99998 * 175.21468 * 16 14 13 18 18 Si 1.86800 * 119.99568 * 355.21482 * 16 14 13 19 19 H 1.48497 * 109.47365 * 275.13624 * 18 16 14 20 20 H 1.48499 * 109.47184 * 35.14553 * 18 16 14 21 21 H 1.48500 * 109.47001 * 155.14001 * 18 16 14 22 22 C 1.50702 * 120.00477 * 180.02562 * 2 1 3 23 23 C 1.53006 * 117.49333 * 8.61603 * 22 2 1 24 24 C 1.53004 * 60.00005 * 252.51312 * 23 22 2 25 25 H 1.09003 * 109.47445 * 84.31523 * 1 2 3 26 26 H 1.09001 * 109.46895 * 204.32393 * 1 2 3 27 27 H 1.09003 * 109.46987 * 324.31580 * 1 2 3 28 28 H 1.08002 * 120.00179 * 172.07653 * 3 2 1 29 29 H 1.08999 * 110.36300 * 274.67374 * 7 6 4 30 30 H 1.09000 * 110.36438 * 36.99357 * 7 6 4 31 31 H 1.09002 * 111.00345 * 155.07836 * 8 7 6 32 32 H 1.08999 * 111.00379 * 278.93227 * 8 7 6 33 33 H 1.09004 * 110.72064 * 206.13120 * 9 8 7 34 34 H 1.09000 * 110.72240 * 82.86091 * 9 8 7 35 35 H 1.09001 * 109.47162 * 64.35052 * 12 10 6 36 36 H 1.09001 * 109.47442 * 304.35297 * 12 10 6 37 37 H 0.96998 * 119.99668 * 355.04574 * 13 12 10 38 38 H 0.97004 * 120.00101 * 180.02562 * 17 16 14 39 39 H 1.08992 * 115.55352 * 154.32737 * 22 2 1 40 40 H 1.08994 * 117.49852 * 0.02562 * 23 22 2 41 41 H 1.08999 * 117.49665 * 145.02501 * 23 22 2 42 42 H 1.08993 * 117.50157 * 252.51270 * 24 23 22 43 43 H 1.09003 * 117.51808 * 107.47845 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4469 2.4196 -0.1755 5 8 0.2359 2.4173 -0.2865 6 7 2.1248 3.5839 -0.2131 7 6 3.5924 3.7244 -0.2046 8 6 3.8631 5.0980 -0.8676 9 6 2.6804 5.9437 -0.3261 10 6 1.5232 4.9243 -0.2705 11 1 0.9035 5.0144 -1.1627 12 6 0.6747 5.1677 0.9790 13 7 -0.0029 6.4615 0.8648 14 6 -0.9009 6.8511 1.8223 15 1 -1.0484 6.2440 2.7033 16 6 -1.6218 8.0263 1.6607 17 7 -2.5518 8.3531 2.5328 18 14 -1.2719 9.1439 0.2054 19 1 -0.1407 10.0474 0.5358 20 1 -0.9179 8.3196 -0.9780 21 1 -2.4792 9.9534 -0.0986 22 6 2.2605 -1.3051 -0.0006 23 6 1.4517 -2.5877 -0.2045 24 6 2.0261 -2.2566 1.1744 25 1 -0.3634 0.1018 -1.0226 26 1 -0.3633 -0.9365 0.4233 27 1 -0.3633 0.8347 0.5995 28 1 3.2442 1.1563 0.1289 29 1 3.9682 3.7163 0.8185 30 1 4.0533 2.9254 -0.7853 31 1 4.8186 5.5081 -0.5405 32 1 3.8238 5.0219 -1.9542 33 1 2.4440 6.7587 -1.0103 34 1 2.9045 6.3274 0.6693 35 1 1.3171 5.1704 1.8596 36 1 -0.0682 4.3757 1.0738 37 1 0.1848 7.0423 0.1109 38 1 -3.0558 9.1741 2.4197 39 1 3.2631 -1.2688 -0.4266 40 1 0.3747 -2.4875 -0.3386 41 1 1.9221 -3.3956 -0.7649 42 1 2.8745 -2.8466 1.5211 43 1 1.3272 -1.9384 1.9480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482054390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:01 Heat of formation + Delta-G solvation = 26.104352 kcal Electronic energy + Delta-G solvation = -21767.018543 eV Core-core repulsion = 18620.939355 eV Total energy + Delta-G solvation = -3146.079188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.16313 -38.50542 -37.27383 -34.64485 -33.20974 -31.73591 -31.39532 -29.20160 -27.65797 -25.28039 -24.48267 -22.72086 -22.55733 -21.87966 -20.76546 -19.28430 -18.20653 -17.51866 -17.04486 -16.25852 -16.04173 -15.08521 -14.47335 -14.39402 -14.23029 -13.90672 -13.55046 -13.27851 -13.01832 -12.84244 -12.78379 -12.55814 -12.31299 -12.07892 -11.76361 -11.59820 -11.46630 -11.24990 -11.14262 -11.06970 -10.86906 -10.72704 -10.63151 -10.46904 -10.10206 -9.56274 -9.29831 -9.04017 -8.79196 -8.35621 -7.16249 -5.70735 -3.05837 1.29025 3.11530 3.33796 3.41326 3.43860 3.48939 3.66745 4.24728 4.54945 4.56959 4.63457 4.64666 4.65890 4.77964 4.94488 5.01866 5.14303 5.30675 5.32070 5.40972 5.49764 5.53427 5.57854 5.59733 5.67555 5.74188 5.78392 5.80082 5.86714 5.88527 5.96236 6.00605 6.10328 6.31631 6.39287 6.54329 6.55783 6.78657 6.94805 7.74405 8.06763 8.42037 8.48220 9.27236 9.99237 10.19780 11.47798 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.003998 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.545195 B = 7001.364741 C = 7893.788325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.003 4.003 3 C -0.222 4.222 4 C 0.558 3.442 5 O -0.528 6.528 6 N -0.611 5.611 7 C 0.102 3.898 8 C -0.134 4.134 9 C -0.126 4.126 10 C 0.128 3.872 11 H 0.075 0.925 12 C 0.152 3.848 13 N -0.751 5.751 14 C -0.240 4.240 15 H 0.089 0.911 16 C 0.004 3.996 17 N -0.934 5.934 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.277 1.277 21 H -0.291 1.291 22 C -0.132 4.132 23 C -0.172 4.172 24 C -0.167 4.167 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.023 0.977 36 H 0.044 0.956 37 H 0.359 0.641 38 H 0.259 0.741 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.588 -18.668 -7.703 26.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.005 4.005 3 C -0.243 4.243 4 C 0.350 3.650 5 O -0.406 6.406 6 N -0.345 5.345 7 C -0.021 4.021 8 C -0.172 4.172 9 C -0.164 4.164 10 C 0.024 3.976 11 H 0.093 0.907 12 C 0.024 3.976 13 N -0.397 5.397 14 C -0.370 4.370 15 H 0.107 0.893 16 C -0.192 4.192 17 N -0.583 5.583 18 Si 0.714 3.286 19 H -0.210 1.210 20 H -0.204 1.204 21 H -0.217 1.217 22 C -0.151 4.151 23 C -0.209 4.209 24 C -0.204 4.204 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.191 0.809 38 H 0.069 0.931 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.740 -18.750 -7.555 25.620 hybrid contribution 0.393 0.961 -0.961 1.415 sum 16.133 -17.790 -8.516 25.481 Atomic orbital electron populations 1.21271 0.90624 1.02896 1.03860 1.21791 0.96277 0.92170 0.90237 1.22256 1.00138 0.91712 1.10179 1.18144 0.86811 0.82961 0.77081 1.90794 1.13722 1.86511 1.49607 1.48376 1.06912 1.05598 1.73624 1.22296 0.81095 0.98025 1.00715 1.22790 0.99102 0.94721 1.00567 1.22721 0.93630 0.97234 1.02864 1.21813 0.94879 0.80689 1.00196 0.90666 1.20912 0.94212 0.89182 0.93318 1.42517 1.51538 1.17355 1.28256 1.19038 1.13028 1.05400 0.99515 0.89320 1.24661 0.97784 0.98651 0.98081 1.69713 1.25270 1.25750 1.37524 0.86580 0.77463 0.81229 0.83378 1.20994 1.20355 1.21731 1.21274 1.00057 0.88844 1.04882 1.23069 1.00606 0.97548 0.99689 1.22991 1.03703 1.01910 0.91772 0.90393 0.92739 0.88104 0.85877 0.91362 0.90854 0.89938 0.90836 0.90212 0.89703 0.95967 0.93821 0.80862 0.93103 0.86752 0.87909 0.88365 0.88288 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 7.96 36.00 0.29 -1.36 16 2 C 0.00 -0.03 5.81 -101.17 -0.59 -0.62 16 3 C -0.22 -2.71 9.08 -37.81 -0.34 -3.05 16 4 C 0.56 8.94 7.45 -12.67 -0.09 8.85 16 5 O -0.53 -10.37 12.34 5.26 0.06 -10.30 16 6 N -0.61 -9.08 3.06 -164.40 -0.50 -9.59 16 7 C 0.10 1.07 6.41 -2.53 -0.02 1.06 16 8 C -0.13 -1.34 7.08 -24.59 -0.17 -1.51 16 9 C -0.13 -1.74 6.06 -24.90 -0.15 -1.89 16 10 C 0.13 2.19 2.93 -66.95 -0.20 1.99 16 11 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 12 C 0.15 3.29 5.65 -4.05 -0.02 3.26 16 13 N -0.75 -18.93 5.25 -59.91 -0.31 -19.25 16 14 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 15 H 0.09 2.85 8.06 -52.48 -0.42 2.43 16 16 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 17 N -0.93 -30.31 13.97 55.49 0.78 -29.53 16 18 Si 0.88 22.69 27.66 -169.99 -4.70 17.99 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.75 6.64 56.52 0.38 -6.38 16 21 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 22 C -0.13 -1.12 6.01 -91.77 -0.55 -1.67 16 23 C -0.17 -1.25 9.76 -26.73 -0.26 -1.51 16 24 C -0.17 -1.23 10.10 -26.73 -0.27 -1.50 16 25 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 26 H 0.05 0.56 6.30 -51.93 -0.33 0.23 16 27 H 0.10 1.58 5.95 -51.93 -0.31 1.28 16 28 H 0.12 1.18 7.05 -52.49 -0.37 0.81 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.61 7.41 -51.93 -0.38 0.23 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.23 7.78 -51.93 -0.40 0.83 16 35 H 0.02 0.49 8.04 -51.93 -0.42 0.07 16 36 H 0.04 1.07 6.91 -51.93 -0.36 0.71 16 37 H 0.36 8.65 5.38 -40.82 -0.22 8.43 16 38 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 39 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.77 6.41 -51.93 -0.33 0.44 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -34.77 342.38 -9.09 -43.86 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.93 Total: 6.90 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.63 Total: -5.24 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.04 Total: -58.37 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.06 Total: -10.30 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.70 Total: 17.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.77 -9.09 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482054390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.964 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds