Wall clock time and date at job start Tue Mar 31 2020 00:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32998 * 120.00106 * 2 1 4 4 C 1.47097 * 119.99787 * 352.08374 * 3 2 1 5 5 O 1.21617 * 120.00413 * 1.86586 * 4 3 2 6 6 N 1.34779 * 120.00000 * 181.86552 * 4 3 2 7 7 C 1.47427 * 125.64842 * 5.42706 * 6 4 3 8 8 C 1.54906 * 104.83309 * 155.83305 * 7 6 4 9 9 C 1.55154 * 101.58156 * 37.00915 * 8 7 6 10 10 C 1.47029 * 125.64924 * 185.38128 * 6 4 3 11 11 H 1.09001 * 109.87555 * 300.66653 * 10 6 4 12 12 C 1.52992 * 109.88259 * 61.67834 * 10 6 4 13 13 N 1.46498 * 109.47204 * 184.35543 * 12 10 6 14 14 C 1.36936 * 120.00403 * 175.05397 * 13 12 10 15 15 H 1.08005 * 119.99944 * 5.14203 * 14 13 12 16 16 C 1.38810 * 120.00436 * 185.14393 * 14 13 12 17 17 N 1.31612 * 119.99998 * 175.21468 * 16 14 13 18 18 Si 1.86800 * 119.99568 * 355.21482 * 16 14 13 19 19 H 1.48497 * 109.47365 * 275.13624 * 18 16 14 20 20 H 1.48499 * 109.47184 * 35.14553 * 18 16 14 21 21 H 1.48500 * 109.47001 * 155.14001 * 18 16 14 22 22 C 1.50702 * 120.00477 * 180.02562 * 2 1 3 23 23 C 1.53006 * 117.49333 * 8.61603 * 22 2 1 24 24 C 1.53004 * 60.00005 * 252.51312 * 23 22 2 25 25 H 1.09003 * 109.47445 * 84.31523 * 1 2 3 26 26 H 1.09001 * 109.46895 * 204.32393 * 1 2 3 27 27 H 1.09003 * 109.46987 * 324.31580 * 1 2 3 28 28 H 1.08002 * 120.00179 * 172.07653 * 3 2 1 29 29 H 1.08999 * 110.36300 * 274.67374 * 7 6 4 30 30 H 1.09000 * 110.36438 * 36.99357 * 7 6 4 31 31 H 1.09002 * 111.00345 * 155.07836 * 8 7 6 32 32 H 1.08999 * 111.00379 * 278.93227 * 8 7 6 33 33 H 1.09004 * 110.72064 * 206.13120 * 9 8 7 34 34 H 1.09000 * 110.72240 * 82.86091 * 9 8 7 35 35 H 1.09001 * 109.47162 * 64.35052 * 12 10 6 36 36 H 1.09001 * 109.47442 * 304.35297 * 12 10 6 37 37 H 0.96998 * 119.99668 * 355.04574 * 13 12 10 38 38 H 0.97004 * 120.00101 * 180.02562 * 17 16 14 39 39 H 1.08992 * 115.55352 * 154.32737 * 22 2 1 40 40 H 1.08994 * 117.49852 * 0.02562 * 23 22 2 41 41 H 1.08999 * 117.49665 * 145.02501 * 23 22 2 42 42 H 1.08993 * 117.50157 * 252.51270 * 24 23 22 43 43 H 1.09003 * 117.51808 * 107.47845 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4469 2.4196 -0.1755 5 8 0.2359 2.4173 -0.2865 6 7 2.1248 3.5839 -0.2131 7 6 3.5924 3.7244 -0.2046 8 6 3.8631 5.0980 -0.8676 9 6 2.6804 5.9437 -0.3261 10 6 1.5232 4.9243 -0.2705 11 1 0.9035 5.0144 -1.1627 12 6 0.6747 5.1677 0.9790 13 7 -0.0029 6.4615 0.8648 14 6 -0.9009 6.8511 1.8223 15 1 -1.0484 6.2440 2.7033 16 6 -1.6218 8.0263 1.6607 17 7 -2.5518 8.3531 2.5328 18 14 -1.2719 9.1439 0.2054 19 1 -0.1407 10.0474 0.5358 20 1 -0.9179 8.3196 -0.9780 21 1 -2.4792 9.9534 -0.0986 22 6 2.2605 -1.3051 -0.0006 23 6 1.4517 -2.5877 -0.2045 24 6 2.0261 -2.2566 1.1744 25 1 -0.3634 0.1018 -1.0226 26 1 -0.3633 -0.9365 0.4233 27 1 -0.3633 0.8347 0.5995 28 1 3.2442 1.1563 0.1289 29 1 3.9682 3.7163 0.8185 30 1 4.0533 2.9254 -0.7853 31 1 4.8186 5.5081 -0.5405 32 1 3.8238 5.0219 -1.9542 33 1 2.4440 6.7587 -1.0103 34 1 2.9045 6.3274 0.6693 35 1 1.3171 5.1704 1.8596 36 1 -0.0682 4.3757 1.0738 37 1 0.1848 7.0423 0.1109 38 1 -3.0558 9.1741 2.4197 39 1 3.2631 -1.2688 -0.4266 40 1 0.3747 -2.4875 -0.3386 41 1 1.9221 -3.3956 -0.7649 42 1 2.8745 -2.8466 1.5211 43 1 1.3272 -1.9384 1.9480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482054390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:01 Heat of formation + Delta-G solvation = 3.383272 kcal Electronic energy + Delta-G solvation = -21768.003803 eV Core-core repulsion = 18620.939355 eV Total energy + Delta-G solvation = -3147.064448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33890 -39.40039 -38.33129 -36.59392 -34.19652 -33.67976 -32.64344 -30.78049 -28.69713 -26.84372 -25.59174 -24.11945 -23.32730 -23.17013 -21.89761 -20.61579 -19.61255 -19.00517 -18.24381 -17.42611 -16.82246 -16.51124 -16.19310 -15.72334 -15.39921 -15.22883 -14.99773 -14.77740 -14.26990 -14.10280 -13.98552 -13.75528 -13.69546 -13.21788 -12.99069 -12.89763 -12.78509 -12.45793 -12.29444 -12.24165 -12.01189 -11.89136 -11.85602 -11.78814 -11.60084 -11.32027 -11.02356 -10.52433 -9.99529 -9.52215 -9.38882 -8.08562 -5.44380 0.31322 1.33736 1.39768 1.46575 1.98613 2.24736 2.44580 3.01676 3.20396 3.39217 3.59781 3.68936 3.76255 3.86752 3.95330 3.96678 4.11032 4.14393 4.24433 4.29506 4.31469 4.50023 4.64954 4.71209 4.73514 4.81530 4.82188 4.88676 4.98254 5.00318 5.09748 5.10406 5.14199 5.15046 5.26348 5.34298 5.42888 5.51772 5.58370 5.67980 6.14164 6.61573 6.99692 7.22710 7.72368 7.96760 9.13039 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.003998 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.545195 B = 7001.364741 C = 7893.788325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.003 3.997 3 C -0.229 4.229 4 C 0.543 3.457 5 O -0.581 6.581 6 N -0.612 5.612 7 C 0.095 3.905 8 C -0.118 4.118 9 C -0.126 4.126 10 C 0.133 3.867 11 H 0.055 0.945 12 C 0.157 3.843 13 N -0.748 5.748 14 C -0.245 4.245 15 H 0.046 0.954 16 C -0.062 4.062 17 N -0.982 5.982 18 Si 0.962 3.038 19 H -0.263 1.263 20 H -0.256 1.256 21 H -0.292 1.292 22 C -0.140 4.140 23 C -0.169 4.169 24 C -0.162 4.162 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.158 0.842 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.022 0.978 36 H 0.004 0.996 37 H 0.368 0.632 38 H 0.261 0.739 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.358 -19.460 -9.748 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.001 3.999 3 C -0.250 4.250 4 C 0.337 3.663 5 O -0.463 6.463 6 N -0.346 5.346 7 C -0.027 4.027 8 C -0.156 4.156 9 C -0.164 4.164 10 C 0.028 3.972 11 H 0.073 0.927 12 C 0.030 3.970 13 N -0.394 5.394 14 C -0.376 4.376 15 H 0.064 0.936 16 C -0.253 4.253 17 N -0.632 5.632 18 Si 0.787 3.213 19 H -0.188 1.188 20 H -0.180 1.180 21 H -0.219 1.219 22 C -0.157 4.157 23 C -0.206 4.206 24 C -0.199 4.199 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.176 0.824 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.023 0.977 37 H 0.202 0.798 38 H 0.070 0.930 39 H 0.155 0.845 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.584 -19.567 -9.609 29.304 hybrid contribution -0.881 1.098 -0.209 1.424 sum 18.703 -18.469 -9.817 28.058 Atomic orbital electron populations 1.21143 0.92377 1.02292 1.02618 1.22025 0.95420 0.93816 0.88597 1.22301 1.01458 0.89729 1.11465 1.18970 0.86567 0.84504 0.76258 1.90779 1.16146 1.87397 1.51989 1.48521 1.08971 1.04241 1.72822 1.22661 0.78071 0.99689 1.02230 1.22808 0.98576 0.93103 1.01092 1.22704 0.93776 0.96852 1.03027 1.21593 0.95719 0.83556 0.96311 0.92730 1.20900 0.93599 0.86396 0.96131 1.42395 1.50918 1.18675 1.27432 1.18955 1.14129 1.05181 0.99346 0.93629 1.25612 0.97387 1.00396 1.01922 1.69910 1.26617 1.26518 1.40138 0.85346 0.77702 0.78784 0.79477 1.18839 1.18034 1.21866 1.21333 1.00803 0.87331 1.06275 1.23170 1.00274 0.97286 0.99844 1.23075 1.04157 1.01286 0.91388 0.91443 0.90716 0.91884 0.82406 0.90241 0.87671 0.86782 0.89719 0.89583 0.90451 0.96053 0.97742 0.79794 0.93043 0.84535 0.88710 0.86313 0.86180 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 7.96 71.23 0.57 -2.83 16 2 C 0.00 0.07 5.81 -17.62 -0.10 -0.03 16 3 C -0.23 -5.31 9.08 23.43 0.21 -5.09 16 4 C 0.54 17.77 7.45 86.57 0.64 18.42 16 5 O -0.58 -24.54 12.34 -4.09 -0.05 -24.59 16 6 N -0.61 -17.83 3.06 -792.28 -2.43 -20.26 16 7 C 0.09 1.67 6.41 86.85 0.56 2.23 16 8 C -0.12 -1.87 7.08 31.98 0.23 -1.65 16 9 C -0.13 -3.19 6.06 31.78 0.19 -3.00 16 10 C 0.13 4.58 2.93 45.34 0.13 4.71 16 11 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 12 C 0.16 7.14 5.65 86.38 0.49 7.63 16 13 N -0.75 -38.69 5.25 -343.46 -1.80 -40.49 16 14 C -0.25 -15.29 10.47 84.03 0.88 -14.41 16 15 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 16 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 17 N -0.98 -65.78 13.97 21.65 0.30 -65.48 16 18 Si 0.96 46.99 27.66 68.60 1.90 48.89 16 19 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.26 -11.47 6.64 99.48 0.66 -10.81 16 21 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 22 C -0.14 -1.98 6.01 -11.54 -0.07 -2.04 16 23 C -0.17 -2.02 9.76 30.60 0.30 -1.72 16 24 C -0.16 -1.97 10.10 30.60 0.31 -1.66 16 25 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 26 H 0.07 1.59 6.30 -2.39 -0.02 1.57 16 27 H 0.06 2.18 5.95 -2.39 -0.01 2.17 16 28 H 0.16 2.46 7.05 -2.91 -0.02 2.44 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 1.25 7.41 -2.39 -0.02 1.23 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.10 7.78 -2.39 -0.02 2.08 16 35 H 0.02 0.97 8.04 -2.39 -0.02 0.95 16 36 H 0.00 0.23 6.91 -2.39 -0.02 0.22 16 37 H 0.37 17.58 5.38 -92.71 -0.50 17.08 16 38 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 39 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.28 6.41 -2.39 -0.02 1.27 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -81.72 342.38 3.17 -78.55 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.45 Total: 26.20 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 4.80 Total: -2.81 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -3.93 Total: -126.23 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.90 Total: 48.89 kcal Total: -81.72 3.17 -78.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482054390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.932 kcal (2) G-P(sol) polarization free energy of solvation -81.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds