Wall clock time and date at job start Tue Mar 31 2020 00:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32987 * 119.99853 * 2 1 4 4 C 1.50696 * 120.00523 * 359.97438 * 3 2 1 5 5 C 1.47108 * 119.99761 * 179.97438 * 3 2 1 6 6 O 1.21613 * 119.99690 * 0.02562 * 5 3 2 7 7 N 1.34774 * 119.99972 * 180.02562 * 5 3 2 8 8 C 1.46506 * 119.99870 * 180.02562 * 7 5 3 9 9 H 1.09000 * 109.17731 * 34.55424 * 8 7 5 10 10 C 1.53049 * 109.39230 * 154.07973 * 8 7 5 11 11 C 1.53964 * 108.89030 * 175.59923 * 10 8 7 12 12 H 1.08998 * 112.99980 * 168.13423 * 11 10 8 13 13 C 1.55431 * 106.41225 * 293.86213 * 11 10 8 14 14 C 1.55172 * 100.35259 * 73.37456 * 13 11 10 15 15 H 1.09002 * 113.04835 * 162.98158 * 14 13 11 16 16 C 1.52986 * 109.32240 * 274.99745 * 8 7 5 17 17 N 1.47787 * 104.25512 * 40.55157 * 14 13 11 18 18 C 1.36941 * 125.86136 * 153.51706 * 17 14 13 19 19 H 1.07996 * 119.99263 * 359.97438 * 18 17 14 20 20 C 1.38810 * 119.99986 * 179.97438 * 18 17 14 21 21 N 1.31616 * 120.00495 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99579 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46906 * 90.00094 * 22 20 18 24 24 H 1.48496 * 109.47266 * 210.00003 * 22 20 18 25 25 H 1.48501 * 109.47470 * 330.00390 * 22 20 18 26 26 C 1.47088 * 108.28785 * 333.53935 * 17 14 13 27 27 H 1.09004 * 109.47065 * 60.00142 * 1 2 3 28 28 H 1.09000 * 109.47863 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47325 * 300.00306 * 1 2 3 30 30 H 1.07992 * 119.99624 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47426 * 270.00072 * 4 3 2 32 32 H 1.09000 * 109.47192 * 29.99657 * 4 3 2 33 33 H 1.09001 * 109.47259 * 149.99881 * 4 3 2 34 34 H 0.97001 * 120.00160 * 359.97438 * 7 5 3 35 35 H 1.09002 * 109.51607 * 55.79110 * 10 8 7 36 36 H 1.09005 * 109.68670 * 295.50622 * 10 8 7 37 37 H 1.09000 * 111.23815 * 315.60131 * 13 11 10 38 38 H 1.09003 * 111.23875 * 191.15282 * 13 11 10 39 39 H 1.09002 * 109.53379 * 64.75638 * 16 8 7 40 40 H 1.09002 * 109.53363 * 304.60449 * 16 8 7 41 41 H 0.96994 * 119.99808 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.97897 * 120.45763 * 26 17 14 43 43 H 1.09000 * 109.97539 * 241.74415 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2510 0.0985 0.0006 7 7 4.3169 2.3189 0.0011 8 6 5.7819 2.3188 0.0011 9 1 6.1400 1.4712 -0.5832 10 6 6.2901 3.6175 -0.6294 11 6 7.8257 3.6554 -0.5236 12 1 8.2749 4.4437 -1.1276 13 6 8.1592 3.7554 0.9913 14 6 7.8224 2.3108 1.4468 15 1 8.2533 2.0573 2.4154 16 6 6.2881 2.1924 1.4392 17 7 8.3396 1.4559 0.3579 18 6 8.7466 0.1544 0.4842 19 1 8.7044 -0.3334 1.4467 20 6 9.2133 -0.5375 -0.6250 21 7 9.2642 0.0569 -1.7981 22 14 9.7691 -2.3126 -0.4525 23 1 8.6145 -3.2174 -0.6835 24 1 10.8297 -2.5985 -1.4517 25 1 10.3048 -2.5330 0.9149 26 6 8.3429 2.2428 -0.8848 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.0469 -0.9353 0.0004 31 1 1.2372 2.7713 -1.0284 32 1 0.4659 2.3267 0.5129 33 1 2.0074 3.2166 0.5133 34 1 3.8319 3.1589 0.0007 35 1 5.8662 4.4701 -0.0988 36 1 5.9952 3.6566 -1.6780 37 1 7.5205 4.4852 1.4888 38 1 9.2132 3.9836 1.1493 39 1 5.9953 1.2240 1.8449 40 1 5.8582 2.9877 2.0482 41 1 9.5900 -0.4268 -2.5732 42 1 9.3558 2.3074 -1.2820 43 1 7.6830 1.7813 -1.6195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484320396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:45 Heat of formation + Delta-G solvation = 2.050132 kcal Electronic energy + Delta-G solvation = -22857.858817 eV Core-core repulsion = 19710.736560 eV Total energy + Delta-G solvation = -3147.122258 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05593 -38.74188 -35.46336 -34.46860 -32.76165 -30.63770 -30.15890 -28.96884 -27.97651 -26.14517 -25.24909 -23.07119 -22.47135 -20.53996 -19.42891 -18.97050 -17.95937 -17.02762 -16.71270 -15.88327 -14.87846 -14.71109 -14.40683 -14.14818 -13.54795 -13.49126 -13.42448 -13.02775 -12.74125 -12.66303 -12.29011 -12.18645 -11.94366 -11.76050 -11.69205 -11.51184 -11.29761 -11.17154 -10.65837 -10.62933 -10.45493 -9.91977 -9.80812 -9.68101 -9.61054 -9.35178 -9.22865 -9.02772 -8.48991 -8.44739 -6.71809 -5.58643 -2.90618 1.51410 3.50885 3.56106 3.56645 3.59363 3.64029 4.61980 4.82785 4.89806 5.10486 5.16029 5.27519 5.29496 5.34841 5.47559 5.52007 5.59158 5.67140 5.69008 5.71814 5.86315 5.94593 5.95121 6.09645 6.13527 6.16056 6.18980 6.28394 6.43902 6.54636 6.62927 6.67684 6.76431 6.94852 6.97558 7.05091 7.17600 7.67266 7.68661 7.92757 7.97901 8.36839 8.70594 9.34461 9.94876 10.60834 11.53525 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.005980 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.292751 B = 4681.408313 C = 5874.034463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.186 4.186 4 C -0.116 4.116 5 C 0.543 3.457 6 O -0.528 6.528 7 N -0.724 5.724 8 C 0.146 3.854 9 H 0.114 0.886 10 C -0.111 4.111 11 C -0.119 4.119 12 H 0.082 0.918 13 C -0.127 4.127 14 C 0.157 3.843 15 H 0.065 0.935 16 C -0.135 4.135 17 N -0.595 5.595 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.924 5.924 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.181 3.819 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.389 0.611 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.250 0.750 42 H 0.044 0.956 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.107 9.321 3.417 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.106 4.106 3 C -0.189 4.189 4 C -0.173 4.173 5 C 0.330 3.670 6 O -0.405 6.405 7 N -0.374 5.374 8 C 0.043 3.957 9 H 0.132 0.868 10 C -0.149 4.149 11 C -0.139 4.139 12 H 0.100 0.900 13 C -0.165 4.165 14 C 0.048 3.952 15 H 0.083 0.917 16 C -0.176 4.176 17 N -0.320 5.320 18 C -0.348 4.348 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.572 5.572 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.056 3.944 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.223 0.777 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.544 8.368 3.257 17.093 hybrid contribution -0.016 -0.562 0.006 0.562 sum -14.561 7.806 3.263 16.840 Atomic orbital electron populations 1.20953 0.92419 1.02798 1.02239 1.23536 0.95964 0.98231 0.92840 1.21549 0.93326 0.96481 1.07593 1.20806 0.99863 0.94318 1.02275 1.18374 0.87366 0.84275 0.77029 1.90882 1.69737 1.30996 1.48848 1.46166 1.08229 1.07783 1.75271 1.21183 0.76639 1.00093 0.97815 0.86782 1.21960 0.96835 0.96186 0.99959 1.22837 0.93854 1.00746 0.96434 0.89999 1.22963 1.00407 0.97254 0.95900 1.21518 0.90877 0.89730 0.93047 0.91714 1.22609 0.99107 1.00435 0.95490 1.44614 1.74657 1.09457 1.03236 1.19015 1.34843 0.86102 0.94832 0.90633 1.24721 1.01808 0.98177 0.95558 1.69939 1.52788 1.35536 0.98925 0.86161 0.77920 0.85083 0.76897 1.21650 1.21849 1.20814 1.21300 0.99462 0.84945 0.88685 0.91025 0.91591 0.90933 0.85598 0.91093 0.91193 0.91838 0.77678 0.92914 0.92221 0.92263 0.91879 0.92339 0.93926 0.93957 0.93802 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 8.91 36.01 0.32 -0.73 16 2 C -0.09 -1.07 9.84 -36.13 -0.36 -1.42 16 3 C -0.19 -2.48 6.00 -102.85 -0.62 -3.10 16 4 C -0.12 -1.05 9.14 36.00 0.33 -0.72 16 5 C 0.54 9.78 7.71 -12.66 -0.10 9.68 16 6 O -0.53 -12.41 15.87 5.27 0.08 -12.33 16 7 N -0.72 -11.66 5.01 -54.97 -0.28 -11.93 16 8 C 0.15 2.80 2.08 -67.91 -0.14 2.66 16 9 H 0.11 2.88 5.38 -51.93 -0.28 2.60 16 10 C -0.11 -1.83 4.96 -26.20 -0.13 -1.96 16 11 C -0.12 -2.18 4.33 -87.93 -0.38 -2.56 16 12 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.13 -2.22 6.18 -24.29 -0.15 -2.37 16 14 C 0.16 3.28 4.30 -65.62 -0.28 3.00 16 15 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 16 C -0.14 -2.64 5.27 -26.28 -0.14 -2.77 16 17 N -0.60 -15.32 2.43 -161.37 -0.39 -15.71 16 18 C -0.22 -6.35 10.29 -15.06 -0.16 -6.50 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -28.06 10.35 55.49 0.57 -27.49 16 22 Si 0.91 23.45 29.55 -169.99 -5.02 18.43 16 23 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.18 4.40 4.10 -2.82 -0.01 4.39 16 27 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.52 7.40 -51.93 -0.38 0.13 16 30 H 0.13 1.81 7.49 -52.49 -0.39 1.42 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.51 6.49 -51.93 -0.34 0.18 16 33 H 0.06 0.52 6.70 -51.93 -0.35 0.18 16 34 H 0.39 4.79 6.71 -40.82 -0.27 4.52 16 35 H 0.05 0.72 7.97 -51.93 -0.41 0.30 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.04 1.19 7.40 -51.93 -0.38 0.81 16 43 H 0.05 1.25 6.15 -51.93 -0.32 0.93 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -34.01 331.81 -8.82 -42.83 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.88 Total: 3.92 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.90 Total: -2.71 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.09 Total: -55.13 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.01 -8.82 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484320396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.878 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds