Wall clock time and date at job start Tue Mar 31 2020 00:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32987 * 119.99853 * 2 1 4 4 C 1.50696 * 120.00523 * 359.97438 * 3 2 1 5 5 C 1.47108 * 119.99761 * 179.97438 * 3 2 1 6 6 O 1.21613 * 119.99690 * 0.02562 * 5 3 2 7 7 N 1.34774 * 119.99972 * 180.02562 * 5 3 2 8 8 C 1.46506 * 119.99870 * 180.02562 * 7 5 3 9 9 H 1.09000 * 109.17731 * 34.55424 * 8 7 5 10 10 C 1.53049 * 109.39230 * 154.07973 * 8 7 5 11 11 C 1.53964 * 108.89030 * 175.59923 * 10 8 7 12 12 H 1.08998 * 112.99980 * 168.13423 * 11 10 8 13 13 C 1.55431 * 106.41225 * 293.86213 * 11 10 8 14 14 C 1.55172 * 100.35259 * 73.37456 * 13 11 10 15 15 H 1.09002 * 113.04835 * 162.98158 * 14 13 11 16 16 C 1.52986 * 109.32240 * 274.99745 * 8 7 5 17 17 N 1.47787 * 104.25512 * 40.55157 * 14 13 11 18 18 C 1.36941 * 125.86136 * 153.51706 * 17 14 13 19 19 H 1.07996 * 119.99263 * 359.97438 * 18 17 14 20 20 C 1.38810 * 119.99986 * 179.97438 * 18 17 14 21 21 N 1.31616 * 120.00495 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99579 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46906 * 90.00094 * 22 20 18 24 24 H 1.48496 * 109.47266 * 210.00003 * 22 20 18 25 25 H 1.48501 * 109.47470 * 330.00390 * 22 20 18 26 26 C 1.47088 * 108.28785 * 333.53935 * 17 14 13 27 27 H 1.09004 * 109.47065 * 60.00142 * 1 2 3 28 28 H 1.09000 * 109.47863 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47325 * 300.00306 * 1 2 3 30 30 H 1.07992 * 119.99624 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47426 * 270.00072 * 4 3 2 32 32 H 1.09000 * 109.47192 * 29.99657 * 4 3 2 33 33 H 1.09001 * 109.47259 * 149.99881 * 4 3 2 34 34 H 0.97001 * 120.00160 * 359.97438 * 7 5 3 35 35 H 1.09002 * 109.51607 * 55.79110 * 10 8 7 36 36 H 1.09005 * 109.68670 * 295.50622 * 10 8 7 37 37 H 1.09000 * 111.23815 * 315.60131 * 13 11 10 38 38 H 1.09003 * 111.23875 * 191.15282 * 13 11 10 39 39 H 1.09002 * 109.53379 * 64.75638 * 16 8 7 40 40 H 1.09002 * 109.53363 * 304.60449 * 16 8 7 41 41 H 0.96994 * 119.99808 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.97897 * 120.45763 * 26 17 14 43 43 H 1.09000 * 109.97539 * 241.74415 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2510 0.0985 0.0006 7 7 4.3169 2.3189 0.0011 8 6 5.7819 2.3188 0.0011 9 1 6.1400 1.4712 -0.5832 10 6 6.2901 3.6175 -0.6294 11 6 7.8257 3.6554 -0.5236 12 1 8.2749 4.4437 -1.1276 13 6 8.1592 3.7554 0.9913 14 6 7.8224 2.3108 1.4468 15 1 8.2533 2.0573 2.4154 16 6 6.2881 2.1924 1.4392 17 7 8.3396 1.4559 0.3579 18 6 8.7466 0.1544 0.4842 19 1 8.7044 -0.3334 1.4467 20 6 9.2133 -0.5375 -0.6250 21 7 9.2642 0.0569 -1.7981 22 14 9.7691 -2.3126 -0.4525 23 1 8.6145 -3.2174 -0.6835 24 1 10.8297 -2.5985 -1.4517 25 1 10.3048 -2.5330 0.9149 26 6 8.3429 2.2428 -0.8848 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.0469 -0.9353 0.0004 31 1 1.2372 2.7713 -1.0284 32 1 0.4659 2.3267 0.5129 33 1 2.0074 3.2166 0.5133 34 1 3.8319 3.1589 0.0007 35 1 5.8662 4.4701 -0.0988 36 1 5.9952 3.6566 -1.6780 37 1 7.5205 4.4852 1.4888 38 1 9.2132 3.9836 1.1493 39 1 5.9953 1.2240 1.8449 40 1 5.8582 2.9877 2.0482 41 1 9.5900 -0.4268 -2.5732 42 1 9.3558 2.3074 -1.2820 43 1 7.6830 1.7813 -1.6195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484320396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:44 Heat of formation + Delta-G solvation = -21.261008 kcal Electronic energy + Delta-G solvation = -22858.869664 eV Core-core repulsion = 19710.736560 eV Total energy + Delta-G solvation = -3148.133105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59115 -40.24985 -36.50648 -36.12325 -34.71510 -32.39124 -31.57622 -30.42725 -29.27542 -27.22397 -27.00329 -24.95085 -23.80395 -21.97902 -21.25447 -20.46526 -19.28679 -18.91201 -17.95947 -17.44776 -16.64957 -16.31200 -16.01666 -15.63362 -15.28944 -14.67910 -14.46592 -14.30343 -14.14034 -13.81179 -13.51905 -13.37879 -13.34276 -13.29043 -13.24440 -13.03059 -12.82432 -12.62279 -12.53835 -12.18156 -12.14694 -11.89388 -11.65901 -11.38594 -11.18344 -11.02199 -10.74702 -10.69508 -10.13448 -9.82512 -8.84052 -7.84719 -5.16343 0.41542 1.36144 1.41245 1.47247 2.27509 2.32209 2.47413 3.33671 3.64559 3.76146 3.81793 3.93841 4.01300 4.11521 4.29525 4.37277 4.42246 4.47720 4.51717 4.59703 4.66286 4.76657 4.78763 4.82311 4.85361 4.92326 5.07330 5.08568 5.16528 5.19760 5.29532 5.33988 5.41656 5.46849 5.48106 5.49540 5.62859 5.71937 5.76256 5.83754 6.22394 6.68113 7.13109 7.38039 7.81786 8.45604 9.25481 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.005980 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.292751 B = 4681.408313 C = 5874.034463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.084 4.084 3 C -0.199 4.199 4 C -0.109 4.109 5 C 0.530 3.470 6 O -0.601 6.601 7 N -0.705 5.705 8 C 0.151 3.849 9 H 0.042 0.958 10 C -0.100 4.100 11 C -0.107 4.107 12 H 0.112 0.888 13 C -0.108 4.108 14 C 0.140 3.860 15 H 0.063 0.937 16 C -0.123 4.123 17 N -0.615 5.615 18 C -0.229 4.229 19 H 0.071 0.929 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.967 3.033 23 H -0.299 1.299 24 H -0.288 1.288 25 H -0.266 1.266 26 C 0.189 3.811 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.414 0.586 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.014 0.986 40 H 0.088 0.912 41 H 0.243 0.757 42 H 0.002 0.998 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 12.824 4.737 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.165 4.165 5 C 0.320 3.680 6 O -0.484 6.484 7 N -0.357 5.357 8 C 0.047 3.953 9 H 0.061 0.939 10 C -0.138 4.138 11 C -0.126 4.126 12 H 0.130 0.870 13 C -0.146 4.146 14 C 0.033 3.967 15 H 0.081 0.919 16 C -0.164 4.164 17 N -0.339 5.339 18 C -0.359 4.359 19 H 0.088 0.912 20 C -0.260 4.260 21 N -0.600 5.600 22 Si 0.796 3.204 23 H -0.227 1.227 24 H -0.214 1.214 25 H -0.191 1.191 26 C 0.064 3.936 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.107 0.893 41 H 0.052 0.948 42 H 0.021 0.979 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -17.134 11.950 4.614 21.393 hybrid contribution 0.739 -1.735 -0.366 1.921 sum -16.395 10.215 4.248 19.778 Atomic orbital electron populations 1.21009 0.88545 1.04025 1.04014 1.23784 0.98600 0.96692 0.91325 1.21612 0.90337 0.99181 1.09024 1.20870 1.00355 0.91567 1.03705 1.19328 0.89614 0.83562 0.75494 1.90850 1.71650 1.33588 1.52272 1.45918 1.07051 1.08574 1.74110 1.20834 0.78399 0.99371 0.96735 0.93932 1.21905 0.95218 0.95913 1.00788 1.22806 0.95261 0.96917 0.97632 0.86967 1.22920 1.01674 0.95201 0.94803 1.21893 0.91543 0.91558 0.91730 0.91899 1.22444 0.98131 0.99661 0.96134 1.44861 1.74558 1.09126 1.05398 1.19326 1.33805 0.88181 0.94573 0.91158 1.25496 1.02997 1.01950 0.95517 1.70163 1.54007 1.36542 0.99243 0.85241 0.77058 0.80522 0.77599 1.22698 1.21367 1.19108 1.21041 0.96356 0.88620 0.87540 0.89089 0.90894 0.88710 0.89150 0.89677 0.88726 0.90706 0.74760 0.87538 0.91830 0.87293 0.91754 0.96717 0.89344 0.94767 0.97937 0.98133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 8.91 71.24 0.63 -1.00 16 2 C -0.08 -2.06 9.84 24.52 0.24 -1.82 16 3 C -0.20 -5.08 6.00 -18.70 -0.11 -5.19 16 4 C -0.11 -1.53 9.14 71.23 0.65 -0.88 16 5 C 0.53 19.67 7.71 86.57 0.67 20.34 16 6 O -0.60 -30.75 15.87 -4.07 -0.06 -30.82 16 7 N -0.71 -21.96 5.01 -446.07 -2.23 -24.20 16 8 C 0.15 5.80 2.08 45.00 0.09 5.90 16 9 H 0.04 2.30 5.38 -2.39 -0.01 2.29 16 10 C -0.10 -2.98 4.96 30.94 0.15 -2.82 16 11 C -0.11 -3.67 4.33 -9.05 -0.04 -3.71 16 12 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 13 C -0.11 -3.38 6.18 32.18 0.20 -3.18 16 14 C 0.14 5.78 4.30 45.79 0.20 5.97 16 15 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 16 C -0.12 -4.71 5.27 30.89 0.16 -4.54 16 17 N -0.62 -33.14 2.43 -664.45 -1.62 -34.75 16 18 C -0.23 -14.04 10.29 84.03 0.87 -13.17 16 19 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 21 N -0.95 -61.58 10.35 21.65 0.22 -61.36 16 22 Si 0.97 50.74 29.55 68.60 2.03 52.77 16 23 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 24 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 25 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 26 C 0.19 9.66 4.10 86.85 0.36 10.01 16 27 H 0.09 0.97 8.10 -2.39 -0.02 0.95 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.95 7.40 -2.39 -0.02 0.93 16 30 H 0.09 2.83 7.49 -2.91 -0.02 2.81 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.90 6.49 -2.39 -0.02 0.89 16 33 H 0.07 0.88 6.70 -2.39 -0.02 0.86 16 34 H 0.41 8.68 6.71 -92.71 -0.62 8.05 16 35 H 0.11 2.14 7.97 -2.39 -0.02 2.12 16 36 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.11 2.44 7.75 -2.39 -0.02 2.42 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 2.58 8.00 -2.39 -0.02 2.56 16 41 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.00 0.14 7.40 -2.39 -0.02 0.12 16 43 H 0.00 0.03 6.15 -2.39 -0.01 0.02 16 Total: -1.00 -86.21 331.81 3.25 -82.96 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.38 Total: 13.22 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 4.54 Total: 2.18 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -3.63 Total: -120.31 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.06 Total: -30.82 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.03 Total: 52.77 kcal Total: -86.21 3.25 -82.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484320396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.701 kcal (2) G-P(sol) polarization free energy of solvation -86.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds