Wall clock time and date at job start Tue Mar 31 2020 00:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32996 * 119.99869 * 2 1 4 4 C 1.50703 * 119.99889 * 0.02562 * 3 2 1 5 5 C 1.47100 * 120.00145 * 180.02562 * 3 2 1 6 6 O 1.21614 * 120.00018 * 2.76499 * 5 3 2 7 7 N 1.34769 * 120.00133 * 182.77172 * 5 3 2 8 8 C 1.46496 * 120.00221 * 174.32839 * 7 5 3 9 9 H 1.09004 * 109.17959 * 47.11719 * 8 7 5 10 10 C 1.53025 * 109.32797 * 287.55777 * 8 7 5 11 11 C 1.53968 * 108.82731 * 295.14616 * 10 8 7 12 12 H 1.08997 * 112.99577 * 168.08767 * 11 10 8 13 13 C 1.55432 * 106.41336 * 293.81369 * 11 10 8 14 14 C 1.55169 * 100.35191 * 73.37931 * 13 11 10 15 15 H 1.08996 * 112.48895 * 162.67169 * 14 13 11 16 16 C 1.52986 * 109.32795 * 166.66975 * 8 7 5 17 17 N 1.47788 * 104.25532 * 40.55166 * 14 13 11 18 18 C 1.36946 * 125.85919 * 153.51180 * 17 14 13 19 19 H 1.07996 * 119.99511 * 27.53072 * 18 17 14 20 20 C 1.38804 * 120.00060 * 207.53557 * 18 17 14 21 21 N 1.31619 * 120.00418 * 6.68967 * 20 18 17 22 22 Si 1.86804 * 120.00196 * 186.69006 * 20 18 17 23 23 H 1.48502 * 109.47033 * 59.99401 * 22 20 18 24 24 H 1.48489 * 109.47207 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46645 * 300.00066 * 22 20 18 26 26 C 1.47081 * 108.28829 * 333.53568 * 17 14 13 27 27 H 1.09007 * 109.46664 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47408 * 299.99988 * 1 2 3 29 29 H 1.09003 * 109.47395 * 60.00277 * 1 2 3 30 30 H 1.07997 * 120.00131 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46619 * 264.54551 * 4 3 2 32 32 H 1.08999 * 109.47139 * 24.54136 * 4 3 2 33 33 H 1.08992 * 109.47415 * 144.54490 * 4 3 2 34 34 H 0.97005 * 119.99989 * 354.32309 * 7 5 3 35 35 H 1.09010 * 109.57505 * 54.94567 * 10 8 7 36 36 H 1.08997 * 109.58128 * 175.20300 * 10 8 7 37 37 H 1.08997 * 111.23373 * 191.15172 * 13 11 10 38 38 H 1.08999 * 111.23578 * 315.60571 * 13 11 10 39 39 H 1.08995 * 109.53633 * 185.06867 * 16 8 7 40 40 H 1.09001 * 109.53300 * 305.29124 * 16 8 7 41 41 H 0.97002 * 120.00423 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.97659 * 241.75005 * 26 17 14 43 43 H 1.08993 * 109.98039 * 120.46650 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 3.6430 1.1519 -0.0006 6 8 4.2511 0.0999 -0.0518 7 7 4.3168 2.3176 0.0559 8 6 5.7764 2.3147 0.1807 9 1 6.1961 1.6127 -0.5399 10 6 6.1629 1.8795 1.5959 11 6 5.6580 2.9359 2.5959 12 1 5.7109 2.6011 3.6318 13 6 6.4667 4.2323 2.3109 14 6 5.8102 4.6834 0.9793 15 1 6.0146 5.7285 0.7468 16 6 6.3122 3.7181 -0.1090 17 7 4.3693 4.4203 1.1765 18 6 3.3414 5.0766 0.5536 19 1 3.4930 5.5148 -0.4218 20 6 2.1049 5.1787 1.1758 21 7 1.9555 4.7624 2.4155 22 14 0.6525 5.9068 0.2538 23 1 0.3782 5.0944 -0.9586 24 1 -0.5439 5.9041 1.1334 25 1 0.9691 7.3015 -0.1461 26 6 4.2287 3.3331 2.1571 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.0470 -0.9353 -0.0004 31 1 1.3210 2.8205 -1.0224 32 1 0.4273 2.3040 0.4278 33 1 1.9618 3.1900 0.5966 34 1 3.8353 3.1587 0.0138 35 1 5.7045 0.9162 1.8198 36 1 7.2470 1.7937 1.6685 37 1 6.3154 4.9727 3.0964 38 1 7.5261 4.0149 2.1749 39 1 7.4020 3.7001 -0.1056 40 1 5.9552 4.0505 -1.0838 41 1 1.0912 4.8334 2.8502 42 1 3.7295 2.4798 1.6979 43 1 3.6575 3.6799 3.0182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484320400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:48 Heat of formation + Delta-G solvation = 35.478308 kcal Electronic energy + Delta-G solvation = -24405.969045 eV Core-core repulsion = 21260.296341 eV Total energy + Delta-G solvation = -3145.672703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33412 -39.71908 -36.55214 -35.37764 -34.79153 -32.49792 -32.07083 -30.29339 -29.11878 -27.00131 -26.94496 -24.84972 -23.65263 -21.95897 -21.34029 -20.30962 -19.36280 -18.69569 -17.86160 -17.02480 -16.79896 -16.35589 -16.00042 -15.28441 -15.09111 -14.62141 -14.36219 -14.10207 -14.01852 -13.94074 -13.45948 -13.38359 -13.28398 -13.24653 -13.16720 -13.01196 -12.87341 -12.56332 -12.34840 -12.23068 -11.98314 -11.93125 -11.74663 -11.34115 -11.07573 -10.91490 -10.62640 -10.53827 -9.87464 -9.11491 -8.61276 -7.75246 -5.37537 0.51477 1.47634 1.50933 1.54152 2.41446 2.46440 2.70960 3.28218 3.65423 3.81955 3.97147 4.04668 4.08542 4.10057 4.36929 4.38071 4.44974 4.47027 4.52425 4.66997 4.73624 4.78315 4.86631 4.87328 4.91329 4.99442 5.04874 5.11318 5.14398 5.25468 5.31147 5.37524 5.42233 5.52894 5.58685 5.61085 5.70938 5.87345 5.94431 5.95733 6.32711 7.00738 7.13021 7.59853 7.73295 8.48639 9.17512 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.011461 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.917223 B = 2442.495007 C = 3922.561680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.087 4.087 3 C -0.195 4.195 4 C -0.153 4.153 5 C 0.527 3.473 6 O -0.607 6.607 7 N -0.693 5.693 8 C 0.149 3.851 9 H 0.061 0.939 10 C -0.113 4.113 11 C -0.111 4.111 12 H 0.083 0.917 13 C -0.112 4.112 14 C 0.135 3.865 15 H 0.071 0.929 16 C -0.128 4.128 17 N -0.595 5.595 18 C -0.270 4.270 19 H 0.075 0.925 20 C -0.011 4.011 21 N -0.911 5.911 22 Si 0.931 3.069 23 H -0.262 1.262 24 H -0.293 1.293 25 H -0.281 1.281 26 C 0.122 3.878 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.432 0.568 35 H 0.040 0.960 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.252 0.748 42 H 0.042 0.958 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 -3.547 -3.171 5.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.107 4.107 3 C -0.197 4.197 4 C -0.209 4.209 5 C 0.316 3.684 6 O -0.492 6.492 7 N -0.359 5.359 8 C 0.044 3.956 9 H 0.079 0.921 10 C -0.151 4.151 11 C -0.130 4.130 12 H 0.101 0.899 13 C -0.151 4.151 14 C 0.029 3.971 15 H 0.089 0.911 16 C -0.167 4.167 17 N -0.321 5.321 18 C -0.398 4.398 19 H 0.093 0.907 20 C -0.210 4.210 21 N -0.555 5.555 22 Si 0.759 3.241 23 H -0.187 1.187 24 H -0.219 1.219 25 H -0.207 1.207 26 C -0.003 4.003 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.289 0.711 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.698 -4.081 -3.146 6.343 hybrid contribution -1.256 0.782 -0.137 1.486 sum 2.442 -3.299 -3.282 5.256 Atomic orbital electron populations 1.20974 0.90074 1.03991 1.02781 1.23678 0.97714 0.96654 0.92621 1.21652 0.92668 0.97650 1.07770 1.21475 1.00827 0.95933 1.02643 1.18861 0.88808 0.84207 0.76550 1.90612 1.70970 1.32957 1.54705 1.47906 1.08569 1.10771 1.68667 1.20846 0.80590 0.97590 0.96604 0.92111 1.22004 1.01449 0.97294 0.94362 1.22663 0.96362 0.95837 0.98134 0.89884 1.22905 0.99172 0.95954 0.97022 1.21959 0.84521 0.96637 0.94022 0.91094 1.22401 1.01435 0.93407 0.99493 1.44967 1.00734 1.37612 1.48803 1.19103 0.90062 1.31834 0.98807 0.90715 1.25585 1.00602 0.99168 0.95623 1.70063 1.23642 1.49928 1.11874 0.85966 0.80025 0.79199 0.78947 1.18668 1.21947 1.20750 1.22141 0.94304 0.90706 0.93157 0.89333 0.90939 0.90313 0.86552 0.92276 0.91626 0.86797 0.71068 0.94103 0.88882 0.92872 0.88492 0.87928 0.92576 0.93861 0.94003 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 8.83 71.24 0.63 -2.49 16 2 C -0.09 -2.94 9.84 24.52 0.24 -2.70 16 3 C -0.19 -7.83 5.80 -18.70 -0.11 -7.93 16 4 C -0.15 -6.20 7.91 71.24 0.56 -5.64 16 5 C 0.53 23.25 6.21 86.57 0.54 23.79 16 6 O -0.61 -28.66 15.34 -4.08 -0.06 -28.72 16 7 N -0.69 -29.16 2.70 -446.13 -1.20 -30.36 16 8 C 0.15 5.39 2.71 45.00 0.12 5.52 16 9 H 0.06 2.22 7.87 -2.39 -0.02 2.20 16 10 C -0.11 -3.87 5.19 30.93 0.16 -3.71 16 11 C -0.11 -4.05 4.33 -9.05 -0.04 -4.09 16 12 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 13 C -0.11 -3.61 6.18 32.17 0.20 -3.41 16 14 C 0.13 4.86 4.30 45.79 0.20 5.06 16 15 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 16 C -0.13 -4.02 5.43 30.89 0.17 -3.86 16 17 N -0.59 -26.47 1.72 -664.47 -1.15 -27.61 16 18 C -0.27 -12.98 7.64 84.03 0.64 -12.34 16 19 H 0.08 3.53 7.84 -2.91 -0.02 3.51 16 20 C -0.01 -0.56 3.11 84.86 0.26 -0.29 16 21 N -0.91 -48.21 10.57 21.65 0.23 -47.98 16 22 Si 0.93 40.05 28.35 68.60 1.94 41.99 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 24 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 26 C 0.12 5.54 4.37 86.85 0.38 5.92 16 27 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.07 1.90 7.42 -2.39 -0.02 1.88 16 29 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 30 H 0.12 3.98 7.49 -2.91 -0.02 3.96 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.45 6.31 -2.39 -0.02 2.44 16 33 H 0.11 5.20 1.65 -2.39 0.00 5.20 16 34 H 0.43 19.04 2.36 -93.65 -0.22 18.82 16 35 H 0.04 1.59 7.24 -2.38 -0.02 1.57 16 36 H 0.09 2.55 7.98 -2.39 -0.02 2.53 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.10 2.41 7.75 -2.39 -0.02 2.39 16 39 H 0.10 2.48 8.00 -2.39 -0.02 2.46 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 42 H 0.04 2.05 3.38 -15.27 -0.05 2.00 16 43 H 0.03 1.71 6.19 -2.39 -0.01 1.69 16 Total: -1.00 -58.87 308.58 4.47 -54.40 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: 0.75 Total: 44.48 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 3.95 Total: -6.19 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -2.12 Total: -105.96 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.06 Total: -28.72 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.94 Total: 41.99 kcal Total: -58.87 4.47 -54.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484320400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.875 kcal (2) G-P(sol) polarization free energy of solvation -58.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds