Wall clock time and date at job start Tue Mar 31 2020 00:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32990 * 119.99944 * 2 1 4 4 C 1.50703 * 119.99944 * 179.97438 * 3 2 1 5 5 C 1.47105 * 120.00239 * 0.02562 * 3 2 1 6 6 O 1.21619 * 119.99649 * 359.97438 * 5 3 2 7 7 N 1.34774 * 119.99970 * 180.02562 * 5 3 2 8 8 C 1.46495 * 119.99808 * 180.02562 * 7 5 3 9 9 H 1.08998 * 109.32897 * 34.99371 * 8 7 5 10 10 C 1.53031 * 109.32823 * 154.64043 * 8 7 5 11 11 C 1.53963 * 108.82712 * 175.67519 * 10 8 7 12 12 H 1.09005 * 112.99424 * 168.08875 * 11 10 8 13 13 C 1.55428 * 106.42030 * 293.81682 * 11 10 8 14 14 C 1.55176 * 100.35055 * 73.37452 * 13 11 10 15 15 H 1.09003 * 112.48235 * 162.66866 * 14 13 11 16 16 C 1.52990 * 109.32239 * 275.35076 * 8 7 5 17 17 N 1.47795 * 104.24947 * 40.56284 * 14 13 11 18 18 C 1.36931 * 125.85553 * 153.55367 * 17 14 13 19 19 H 1.08001 * 120.00258 * 359.97438 * 18 17 14 20 20 C 1.38815 * 119.99887 * 179.97438 * 18 17 14 21 21 N 1.31619 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46972 * 90.00455 * 22 20 18 24 24 H 1.48495 * 109.47280 * 210.00718 * 22 20 18 25 25 H 1.48506 * 109.47179 * 330.00654 * 22 20 18 26 26 C 1.47084 * 108.28528 * 333.52067 * 17 14 13 27 27 H 1.09002 * 109.47152 * 299.99804 * 1 2 3 28 28 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47113 * 59.99886 * 1 2 3 30 30 H 1.08003 * 119.99742 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47209 * 89.99700 * 4 3 2 32 32 H 1.09000 * 109.47393 * 210.00446 * 4 3 2 33 33 H 1.09000 * 109.47031 * 330.00000 * 4 3 2 34 34 H 0.97001 * 120.00037 * 359.97438 * 7 5 3 35 35 H 1.09000 * 109.57759 * 295.47759 * 10 8 7 36 36 H 1.09007 * 109.57678 * 55.87185 * 10 8 7 37 37 H 1.08990 * 111.23996 * 191.15823 * 13 11 10 38 38 H 1.09002 * 111.23161 * 315.60738 * 13 11 10 39 39 H 1.08990 * 109.53656 * 304.53098 * 16 8 7 40 40 H 1.09002 * 109.53352 * 64.76046 * 16 8 7 41 41 H 0.97000 * 119.99922 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.97795 * 241.75213 * 26 17 14 43 43 H 1.09004 * 109.97225 * 120.47299 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4365 2.4257 0.0006 6 8 0.2203 2.4257 0.0006 7 7 2.1104 3.5929 0.0000 8 6 1.3779 4.8616 0.0012 9 1 0.4685 4.7526 0.5921 10 6 2.2555 5.9525 0.6189 11 6 1.5188 7.3005 0.5156 12 1 1.9823 8.0859 1.1127 13 6 1.4239 7.6343 -0.9995 14 6 0.3374 6.6183 -1.4413 15 1 -0.1045 6.8731 -2.4046 16 6 1.0066 5.2330 -1.4357 17 7 -0.6511 6.6421 -0.3428 18 6 -1.9825 6.3422 -0.4553 19 1 -2.3929 6.0576 -1.4128 20 6 -2.8045 6.4039 0.6616 21 7 -2.3044 6.7512 1.8285 22 14 -4.6209 5.9954 0.5081 23 1 -4.8236 4.5439 0.7468 24 1 -5.3899 6.7742 1.5116 25 1 -5.0930 6.3434 -0.8562 26 6 0.0406 7.0425 0.8919 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 2.0470 -0.9354 -0.0004 31 1 4.0427 1.1515 -1.0269 32 1 4.0422 2.0418 0.5144 33 1 4.0421 0.2619 0.5148 34 1 3.0804 3.5928 -0.0003 35 1 2.4449 5.7192 1.6666 36 1 3.2006 6.0104 0.0789 37 1 1.0925 8.6605 -1.1577 38 1 2.3706 7.4449 -1.5055 39 1 1.9066 5.2579 -2.0499 40 1 0.3118 4.4941 -1.8352 41 1 -2.8790 6.7947 2.6088 42 1 -0.0218 6.2428 1.6298 43 1 -0.4066 7.9532 1.2906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484320401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:51 Heat of formation + Delta-G solvation = -16.116170 kcal Electronic energy + Delta-G solvation = -23112.775844 eV Core-core repulsion = 19964.865837 eV Total energy + Delta-G solvation = -3147.910008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59193 -40.30444 -36.31311 -35.79702 -34.73503 -32.39233 -31.70070 -30.71163 -29.56779 -27.21318 -25.86229 -24.93046 -24.13599 -22.13585 -21.27624 -20.69298 -19.64875 -18.91939 -17.45041 -17.17823 -16.57682 -16.16839 -15.90261 -15.53568 -15.27128 -14.99226 -14.34831 -14.17460 -14.01746 -13.76405 -13.66483 -13.47980 -13.42389 -13.30667 -13.19809 -13.02218 -12.82229 -12.61884 -12.53827 -12.34576 -12.12947 -11.88557 -11.64340 -11.32442 -11.16159 -10.96791 -10.69348 -10.44741 -10.13321 -9.73230 -8.83079 -7.83836 -5.15277 0.48501 1.36929 1.41664 1.47782 2.33714 2.35996 2.48089 3.34584 3.65433 3.79207 3.82680 3.94843 3.98226 4.12634 4.37347 4.38396 4.43947 4.52966 4.54648 4.62253 4.67386 4.75956 4.79559 4.82887 4.83417 4.90996 5.02498 5.09525 5.19831 5.27415 5.31003 5.34829 5.42513 5.48476 5.50427 5.50620 5.67300 5.72948 5.77872 5.84709 6.23049 6.74201 7.13863 7.44720 7.82595 8.46646 9.26354 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.006821 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.207533 B = 4103.863876 C = 5410.708141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.070 4.070 3 C -0.203 4.203 4 C -0.105 4.105 5 C 0.525 3.475 6 O -0.582 6.582 7 N -0.710 5.710 8 C 0.154 3.846 9 H 0.044 0.956 10 C -0.101 4.101 11 C -0.107 4.107 12 H 0.110 0.890 13 C -0.110 4.110 14 C 0.139 3.861 15 H 0.062 0.938 16 C -0.121 4.121 17 N -0.613 5.613 18 C -0.227 4.227 19 H 0.070 0.930 20 C -0.068 4.068 21 N -0.950 5.950 22 Si 0.967 3.033 23 H -0.298 1.298 24 H -0.289 1.289 25 H -0.267 1.267 26 C 0.189 3.811 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.166 0.834 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.412 0.588 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.015 0.985 41 H 0.243 0.757 42 H 0.002 0.998 43 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.452 -8.421 -4.882 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.089 4.089 3 C -0.206 4.206 4 C -0.162 4.162 5 C 0.315 3.685 6 O -0.464 6.464 7 N -0.362 5.362 8 C 0.049 3.951 9 H 0.062 0.938 10 C -0.139 4.139 11 C -0.126 4.126 12 H 0.129 0.871 13 C -0.148 4.148 14 C 0.033 3.967 15 H 0.080 0.920 16 C -0.162 4.162 17 N -0.338 5.338 18 C -0.356 4.356 19 H 0.088 0.912 20 C -0.260 4.260 21 N -0.600 5.600 22 Si 0.796 3.204 23 H -0.226 1.226 24 H -0.215 1.215 25 H -0.192 1.192 26 C 0.064 3.936 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.183 0.817 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.250 0.750 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.034 0.966 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 17.418 -8.397 -4.757 19.913 hybrid contribution -1.656 -0.200 0.380 1.711 sum 15.762 -8.597 -4.377 18.480 Atomic orbital electron populations 1.20924 0.93999 1.01304 1.01586 1.23880 0.95846 0.98143 0.91040 1.21752 0.98468 0.91364 1.08988 1.20799 0.87535 1.04216 1.03648 1.19308 0.87197 0.85925 0.76074 1.90871 1.16202 1.88186 1.51133 1.45952 1.10566 1.05031 1.74636 1.20785 0.94927 0.82780 0.96627 0.93764 1.21909 0.98418 0.92746 1.00820 1.22801 0.94986 0.97313 0.97550 0.87147 1.22937 0.98756 0.98166 0.94902 1.21871 0.89542 0.93733 0.91597 0.91952 1.22407 0.99486 0.98016 0.96256 1.44830 1.04199 1.79384 1.05344 1.19311 0.84551 1.37220 0.94559 0.91162 1.25492 1.01979 1.03002 0.95542 1.70166 1.34652 1.55939 0.99242 0.85240 0.80835 0.76821 0.77519 1.22614 1.21505 1.19186 1.21040 0.89126 0.95694 0.87693 0.93430 0.90485 0.93058 0.81662 0.89709 0.91000 0.89161 0.75017 0.91914 0.87718 0.91865 0.87432 0.89549 0.96566 0.94797 0.98009 0.98010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.59 8.45 71.24 0.60 -2.99 16 2 C -0.07 -1.59 9.95 24.52 0.24 -1.34 16 3 C -0.20 -4.96 6.00 -18.70 -0.11 -5.07 16 4 C -0.11 -1.46 9.61 71.24 0.68 -0.77 16 5 C 0.52 18.64 7.68 86.57 0.66 19.30 16 6 O -0.58 -27.84 12.73 -4.09 -0.05 -27.89 16 7 N -0.71 -21.63 5.01 -446.11 -2.24 -23.87 16 8 C 0.15 5.79 2.08 45.00 0.09 5.88 16 9 H 0.04 2.35 5.38 -2.39 -0.01 2.33 16 10 C -0.10 -2.98 4.95 30.93 0.15 -2.83 16 11 C -0.11 -3.68 4.33 -9.05 -0.04 -3.72 16 12 H 0.11 3.23 8.14 -2.38 -0.02 3.21 16 13 C -0.11 -3.43 6.18 32.18 0.20 -3.23 16 14 C 0.14 5.72 4.30 45.77 0.20 5.92 16 15 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 16 C -0.12 -4.56 5.26 30.88 0.16 -4.40 16 17 N -0.61 -32.69 2.43 -664.49 -1.61 -34.31 16 18 C -0.23 -13.75 10.29 84.04 0.87 -12.89 16 19 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 21 N -0.95 -61.23 10.35 21.65 0.22 -61.01 16 22 Si 0.97 50.39 29.55 68.60 2.03 52.42 16 23 H -0.30 -15.84 7.11 99.48 0.71 -15.14 16 24 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 25 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 26 C 0.19 9.60 4.10 86.85 0.36 9.95 16 27 H 0.05 1.73 7.22 -2.39 -0.02 1.71 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.81 7.22 -2.38 -0.02 1.79 16 30 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.88 6.70 -2.39 -0.02 0.86 16 33 H 0.09 0.88 8.07 -2.39 -0.02 0.86 16 34 H 0.41 8.59 6.70 -92.71 -0.62 7.97 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 2.12 7.97 -2.38 -0.02 2.10 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.11 2.43 7.74 -2.39 -0.02 2.41 16 39 H 0.09 2.51 7.99 -2.39 -0.02 2.49 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.00 0.11 6.15 -2.39 -0.01 0.09 16 43 H 0.00 0.10 7.40 -2.39 -0.02 0.08 16 Total: -1.00 -82.93 329.80 3.26 -79.67 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.38 Total: 14.88 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 4.54 Total: 0.10 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -3.63 Total: -119.18 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.05 Total: -27.89 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.03 Total: 52.42 kcal Total: -82.93 3.26 -79.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484320401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.559 kcal (2) G-P(sol) polarization free energy of solvation -82.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds