Wall clock time and date at job start Tue Mar 31 2020 00:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32998 * 119.99876 * 2 1 4 4 C 1.50699 * 120.00063 * 180.02562 * 3 2 1 5 5 C 1.47107 * 119.99941 * 359.97438 * 3 2 1 6 6 O 1.21611 * 120.00108 * 1.52245 * 5 3 2 7 7 N 1.34782 * 119.99612 * 181.51659 * 5 3 2 8 8 C 1.46505 * 119.99415 * 183.80257 * 7 5 3 9 9 H 1.09000 * 109.31952 * 50.35044 * 8 7 5 10 10 C 1.53021 * 109.32601 * 290.70078 * 8 7 5 11 11 C 1.53965 * 108.94165 * 295.07965 * 10 8 7 12 12 H 1.08995 * 112.99779 * 168.16523 * 11 10 8 13 13 C 1.55404 * 106.42994 * 294.01130 * 11 10 8 14 14 C 1.55169 * 100.46621 * 73.19901 * 13 11 10 15 15 H 1.09006 * 113.04666 * 163.02721 * 14 13 11 16 16 C 1.52984 * 109.32153 * 169.81242 * 8 7 5 17 17 N 1.47792 * 104.25558 * 40.59301 * 14 13 11 18 18 C 1.36941 * 125.85451 * 153.51346 * 17 14 13 19 19 H 1.08004 * 119.99751 * 22.49067 * 18 17 14 20 20 C 1.38810 * 119.99753 * 202.48551 * 18 17 14 21 21 N 1.31618 * 120.00027 * 6.50319 * 20 18 17 22 22 Si 1.86803 * 119.99917 * 186.49615 * 20 18 17 23 23 H 1.48497 * 109.46905 * 60.00301 * 22 20 18 24 24 H 1.48504 * 109.46812 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46967 * 300.00054 * 22 20 18 26 26 C 1.47081 * 108.28713 * 333.53347 * 17 14 13 27 27 H 1.09003 * 109.47121 * 59.99792 * 1 2 3 28 28 H 1.08995 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46791 * 300.00013 * 1 2 3 30 30 H 1.07997 * 120.00075 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46890 * 270.05557 * 4 3 2 32 32 H 1.09000 * 109.47435 * 30.05142 * 4 3 2 33 33 H 1.08996 * 109.47066 * 150.05680 * 4 3 2 34 34 H 0.96992 * 120.00313 * 3.80848 * 7 5 3 35 35 H 1.08999 * 109.58078 * 54.95014 * 10 8 7 36 36 H 1.09003 * 109.57726 * 175.21086 * 10 8 7 37 37 H 1.09004 * 111.14383 * 315.39749 * 13 11 10 38 38 H 1.08996 * 111.21699 * 191.03180 * 13 11 10 39 39 H 1.08993 * 109.53361 * 185.06780 * 16 8 7 40 40 H 1.09008 * 109.53446 * 305.21627 * 16 8 7 41 41 H 0.97000 * 119.99982 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.97329 * 120.45820 * 26 17 14 43 43 H 1.08993 * 109.97767 * 241.70361 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1519 -0.0006 5 6 1.4364 2.4258 -0.0006 6 8 0.2206 2.4260 0.0269 7 7 2.1100 3.5928 -0.0315 8 6 1.3817 4.8612 0.0521 9 1 0.6986 4.8297 0.9009 10 6 0.5810 5.0712 -1.2349 11 6 1.5602 5.2291 -2.4126 12 1 1.0694 5.1773 -3.3844 13 6 2.3344 6.5538 -2.1658 14 6 3.2649 6.1235 -1.0009 15 1 4.1043 6.8029 -0.8520 16 6 2.3781 6.0049 0.2510 17 7 3.7008 4.7599 -1.3680 18 6 4.8664 4.1576 -0.9759 19 1 5.3784 4.4986 -0.0882 20 6 5.3899 3.1087 -1.7194 21 7 4.8388 2.7766 -2.8675 22 14 6.8765 2.1687 -1.0903 23 1 6.5537 1.5524 0.2216 24 1 7.2371 1.1051 -2.0620 25 1 8.0209 3.1015 -0.9309 26 6 2.6680 4.1608 -2.2270 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 2.0470 -0.9353 -0.0004 31 1 4.0427 1.1506 1.0270 32 1 4.0422 0.2625 -0.5155 33 1 4.0420 2.0424 -0.5135 34 1 3.0768 3.5928 -0.1091 35 1 -0.0634 4.2095 -1.4089 36 1 -0.0283 5.9703 -1.1435 37 1 1.6594 7.3522 -1.8576 38 1 2.9102 6.8437 -3.0446 39 1 1.8361 6.9381 0.4035 40 1 3.0007 5.7986 1.1218 41 1 5.2043 2.0434 -3.3869 42 1 3.0954 3.8968 -3.1942 43 1 2.2542 3.2734 -1.7482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484320403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:55 Heat of formation + Delta-G solvation = 52.196849 kcal Electronic energy + Delta-G solvation = -24530.531752 eV Core-core repulsion = 21385.584019 eV Total energy + Delta-G solvation = -3144.947733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74419 -38.21745 -34.56104 -33.50300 -33.30980 -30.77122 -30.50865 -29.32674 -27.71142 -25.26746 -24.29235 -23.16179 -22.49402 -20.72872 -19.70332 -18.68737 -18.37707 -16.94684 -15.86048 -15.15229 -15.00886 -14.59545 -14.28838 -13.68586 -13.61044 -13.19179 -12.75568 -12.54144 -12.37663 -12.15947 -12.09776 -11.95115 -11.74293 -11.62279 -11.55926 -11.43653 -11.34206 -11.14077 -10.88285 -10.66733 -10.37814 -10.19005 -9.91797 -9.70305 -9.58487 -9.33604 -8.80776 -8.67593 -8.36353 -7.42250 -6.83936 -5.87760 -3.43262 2.05994 3.23810 3.30181 3.31951 4.06023 4.22467 4.27503 5.13027 5.25016 5.32983 5.45533 5.49789 5.56030 5.64004 5.81444 5.86267 5.95377 5.97881 6.04816 6.14957 6.19908 6.24661 6.31565 6.32111 6.34399 6.40001 6.47875 6.58827 6.65729 6.74217 6.85566 6.89865 6.94282 6.98067 7.07289 7.35319 7.43375 7.53864 7.59445 7.80093 8.16199 8.71872 8.98149 9.28025 9.55491 10.30963 11.08508 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.011977 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.108410 B = 2337.225126 C = 3855.956599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.109 4.109 3 C -0.160 4.160 4 C -0.153 4.153 5 C 0.535 3.465 6 O -0.570 6.570 7 N -0.691 5.691 8 C 0.162 3.838 9 H 0.058 0.942 10 C -0.124 4.124 11 C -0.114 4.114 12 H 0.075 0.925 13 C -0.125 4.125 14 C 0.147 3.853 15 H 0.067 0.933 16 C -0.141 4.141 17 N -0.588 5.588 18 C -0.266 4.266 19 H 0.078 0.922 20 C 0.015 3.985 21 N -0.887 5.887 22 Si 0.891 3.109 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.281 1.281 26 C 0.124 3.876 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.126 0.874 34 H 0.435 0.565 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.258 0.742 42 H 0.069 0.931 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 1.337 4.125 6.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.129 4.129 3 C -0.163 4.163 4 C -0.209 4.209 5 C 0.324 3.676 6 O -0.453 6.453 7 N -0.358 5.358 8 C 0.056 3.944 9 H 0.076 0.924 10 C -0.163 4.163 11 C -0.133 4.133 12 H 0.093 0.907 13 C -0.163 4.163 14 C 0.039 3.961 15 H 0.085 0.915 16 C -0.181 4.181 17 N -0.314 5.314 18 C -0.394 4.394 19 H 0.095 0.905 20 C -0.186 4.186 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.207 1.207 26 C 0.000 4.000 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.292 0.708 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.184 1.174 4.055 6.685 hybrid contribution 1.337 -0.549 0.126 1.450 sum -3.847 0.626 4.181 5.716 Atomic orbital electron populations 1.20881 0.92272 0.99610 1.03774 1.23406 0.96697 0.96543 0.96209 1.21644 0.96817 0.93286 1.04551 1.21469 0.90861 1.06566 1.01992 1.18431 0.87051 0.84983 0.77171 1.90646 1.13883 1.88242 1.52567 1.47646 1.14872 1.03572 1.69704 1.20569 0.92926 0.84167 0.96705 0.92413 1.22086 0.97627 1.01272 0.95306 1.22753 0.96747 0.97020 0.96796 0.90688 1.22929 0.98066 0.96365 0.98986 1.21680 0.93880 0.88718 0.91790 0.91491 1.22520 0.98176 0.96862 1.00579 1.44875 1.18995 1.09682 1.57836 1.18981 1.00020 1.14006 1.06424 0.90467 1.25101 0.97561 1.00531 0.95400 1.69902 1.40831 1.29940 1.12313 0.86629 0.83064 0.79806 0.78589 1.19925 1.21142 1.20702 1.22330 0.86399 0.94096 0.97159 0.90665 0.94136 0.90729 0.86825 0.92479 0.92666 0.85599 0.70817 0.91018 0.92666 0.92349 0.92074 0.91832 0.92177 0.93089 0.91347 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 8.45 36.01 0.30 -1.49 16 2 C -0.11 -1.89 9.95 -36.13 -0.36 -2.25 16 3 C -0.16 -3.20 6.00 -102.84 -0.62 -3.81 16 4 C -0.15 -3.08 8.70 36.01 0.31 -2.77 16 5 C 0.53 11.41 5.97 -12.66 -0.08 11.33 16 6 O -0.57 -12.57 11.66 5.27 0.06 -12.50 16 7 N -0.69 -14.38 2.73 -54.98 -0.15 -14.53 16 8 C 0.16 3.02 2.73 -67.92 -0.19 2.84 16 9 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 10 C -0.12 -2.26 5.14 -26.22 -0.13 -2.40 16 11 C -0.11 -2.18 4.36 -87.77 -0.38 -2.57 16 12 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.13 -2.19 6.17 -24.31 -0.15 -2.34 16 14 C 0.15 2.80 4.29 -65.62 -0.28 2.51 16 15 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.14 -2.41 5.42 -26.28 -0.14 -2.55 16 17 N -0.59 -13.23 1.74 -161.18 -0.28 -13.51 16 18 C -0.27 -6.43 7.60 -15.06 -0.11 -6.55 16 19 H 0.08 1.83 7.84 -52.48 -0.41 1.41 16 20 C 0.01 0.37 3.32 -17.43 -0.06 0.31 16 21 N -0.89 -23.28 10.72 55.49 0.60 -22.68 16 22 Si 0.89 19.67 28.09 -169.99 -4.77 14.90 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.12 2.84 4.54 -2.66 -0.01 2.83 16 27 H 0.07 1.36 7.26 -51.93 -0.38 0.98 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.29 7.18 -51.92 -0.37 0.92 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.05 1.05 8.07 -51.93 -0.42 0.64 16 33 H 0.13 2.82 2.16 -51.93 -0.11 2.71 16 34 H 0.44 9.53 2.41 -40.82 -0.10 9.43 16 35 H 0.07 1.44 6.65 -51.93 -0.35 1.09 16 36 H 0.05 0.87 7.98 -51.93 -0.41 0.46 16 37 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 40 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 41 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 42 H 0.07 1.81 6.27 -51.93 -0.33 1.48 16 43 H 0.06 1.42 3.96 -58.31 -0.23 1.19 16 LS Contribution 307.73 15.07 4.64 4.64 Total: -1.00 -26.23 307.73 -8.25 -34.48 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -6.44 Total: 16.11 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.90 Total: -6.90 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.16 Total: -50.73 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.06 Total: -12.50 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.77 Total: 14.90 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.23 -8.25 -34.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484320403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.677 kcal (2) G-P(sol) polarization free energy of solvation -26.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds