Wall clock time and date at job start Tue Mar 31 2020 00:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32998 * 119.99876 * 2 1 4 4 C 1.50699 * 120.00063 * 180.02562 * 3 2 1 5 5 C 1.47107 * 119.99941 * 359.97438 * 3 2 1 6 6 O 1.21611 * 120.00108 * 1.52245 * 5 3 2 7 7 N 1.34782 * 119.99612 * 181.51659 * 5 3 2 8 8 C 1.46505 * 119.99415 * 183.80257 * 7 5 3 9 9 H 1.09000 * 109.31952 * 50.35044 * 8 7 5 10 10 C 1.53021 * 109.32601 * 290.70078 * 8 7 5 11 11 C 1.53965 * 108.94165 * 295.07965 * 10 8 7 12 12 H 1.08995 * 112.99779 * 168.16523 * 11 10 8 13 13 C 1.55404 * 106.42994 * 294.01130 * 11 10 8 14 14 C 1.55169 * 100.46621 * 73.19901 * 13 11 10 15 15 H 1.09006 * 113.04666 * 163.02721 * 14 13 11 16 16 C 1.52984 * 109.32153 * 169.81242 * 8 7 5 17 17 N 1.47792 * 104.25558 * 40.59301 * 14 13 11 18 18 C 1.36941 * 125.85451 * 153.51346 * 17 14 13 19 19 H 1.08004 * 119.99751 * 22.49067 * 18 17 14 20 20 C 1.38810 * 119.99753 * 202.48551 * 18 17 14 21 21 N 1.31618 * 120.00027 * 6.50319 * 20 18 17 22 22 Si 1.86803 * 119.99917 * 186.49615 * 20 18 17 23 23 H 1.48497 * 109.46905 * 60.00301 * 22 20 18 24 24 H 1.48504 * 109.46812 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46967 * 300.00054 * 22 20 18 26 26 C 1.47081 * 108.28713 * 333.53347 * 17 14 13 27 27 H 1.09003 * 109.47121 * 59.99792 * 1 2 3 28 28 H 1.08995 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46791 * 300.00013 * 1 2 3 30 30 H 1.07997 * 120.00075 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46890 * 270.05557 * 4 3 2 32 32 H 1.09000 * 109.47435 * 30.05142 * 4 3 2 33 33 H 1.08996 * 109.47066 * 150.05680 * 4 3 2 34 34 H 0.96992 * 120.00313 * 3.80848 * 7 5 3 35 35 H 1.08999 * 109.58078 * 54.95014 * 10 8 7 36 36 H 1.09003 * 109.57726 * 175.21086 * 10 8 7 37 37 H 1.09004 * 111.14383 * 315.39749 * 13 11 10 38 38 H 1.08996 * 111.21699 * 191.03180 * 13 11 10 39 39 H 1.08993 * 109.53361 * 185.06780 * 16 8 7 40 40 H 1.09008 * 109.53446 * 305.21627 * 16 8 7 41 41 H 0.97000 * 119.99982 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.97329 * 120.45820 * 26 17 14 43 43 H 1.08993 * 109.97767 * 241.70361 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1519 -0.0006 5 6 1.4364 2.4258 -0.0006 6 8 0.2206 2.4260 0.0269 7 7 2.1100 3.5928 -0.0315 8 6 1.3817 4.8612 0.0521 9 1 0.6986 4.8297 0.9009 10 6 0.5810 5.0712 -1.2349 11 6 1.5602 5.2291 -2.4126 12 1 1.0694 5.1773 -3.3844 13 6 2.3344 6.5538 -2.1658 14 6 3.2649 6.1235 -1.0009 15 1 4.1043 6.8029 -0.8520 16 6 2.3781 6.0049 0.2510 17 7 3.7008 4.7599 -1.3680 18 6 4.8664 4.1576 -0.9759 19 1 5.3784 4.4986 -0.0882 20 6 5.3899 3.1087 -1.7194 21 7 4.8388 2.7766 -2.8675 22 14 6.8765 2.1687 -1.0903 23 1 6.5537 1.5524 0.2216 24 1 7.2371 1.1051 -2.0620 25 1 8.0209 3.1015 -0.9309 26 6 2.6680 4.1608 -2.2270 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 2.0470 -0.9353 -0.0004 31 1 4.0427 1.1506 1.0270 32 1 4.0422 0.2625 -0.5155 33 1 4.0420 2.0424 -0.5135 34 1 3.0768 3.5928 -0.1091 35 1 -0.0634 4.2095 -1.4089 36 1 -0.0283 5.9703 -1.1435 37 1 1.6594 7.3522 -1.8576 38 1 2.9102 6.8437 -3.0446 39 1 1.8361 6.9381 0.4035 40 1 3.0007 5.7986 1.1218 41 1 5.2043 2.0434 -3.3869 42 1 3.0954 3.8968 -3.1942 43 1 2.2542 3.2734 -1.7482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484320403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:54 Heat of formation + Delta-G solvation = 39.206043 kcal Electronic energy + Delta-G solvation = -24531.095076 eV Core-core repulsion = 21385.584019 eV Total energy + Delta-G solvation = -3145.511056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.30383 -39.78128 -36.13763 -35.17478 -34.87268 -32.45095 -32.05107 -30.79950 -29.28704 -27.00060 -25.79168 -24.80313 -23.95366 -22.22505 -21.35983 -20.22634 -19.91945 -18.69088 -17.47426 -16.81107 -16.55093 -16.27137 -15.88969 -15.28407 -15.06758 -14.69094 -14.33358 -14.10244 -13.92990 -13.73128 -13.58245 -13.52236 -13.24612 -13.14754 -13.04178 -12.99772 -12.82965 -12.68339 -12.54585 -12.24719 -11.97394 -11.90776 -11.67461 -11.29260 -11.06928 -10.86919 -10.58937 -10.23830 -9.88442 -9.01784 -8.65228 -7.74868 -5.31195 0.57920 1.47585 1.50270 1.53790 2.45160 2.48877 2.75649 3.29746 3.66966 3.84664 3.99962 4.04204 4.08486 4.11871 4.39777 4.41922 4.47077 4.49360 4.65484 4.70940 4.79442 4.81246 4.87517 4.89827 4.93101 4.93276 5.09863 5.15851 5.16505 5.28390 5.35726 5.41441 5.43855 5.52698 5.60594 5.64453 5.76087 5.84397 5.95081 6.01904 6.30977 7.04996 7.16389 7.66030 7.75974 8.49154 9.19906 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.011977 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.108410 B = 2337.225126 C = 3855.956599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.087 4.087 3 C -0.197 4.197 4 C -0.150 4.150 5 C 0.526 3.474 6 O -0.587 6.587 7 N -0.697 5.697 8 C 0.153 3.847 9 H 0.061 0.939 10 C -0.114 4.114 11 C -0.113 4.113 12 H 0.080 0.920 13 C -0.112 4.112 14 C 0.136 3.864 15 H 0.071 0.929 16 C -0.130 4.130 17 N -0.598 5.598 18 C -0.264 4.264 19 H 0.080 0.920 20 C -0.019 4.019 21 N -0.916 5.916 22 Si 0.933 3.067 23 H -0.259 1.259 24 H -0.297 1.297 25 H -0.282 1.282 26 C 0.131 3.869 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.430 0.570 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.249 0.751 42 H 0.025 0.975 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 2.121 5.394 7.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.107 4.107 3 C -0.199 4.199 4 C -0.206 4.206 5 C 0.316 3.684 6 O -0.472 6.472 7 N -0.361 5.361 8 C 0.048 3.952 9 H 0.079 0.921 10 C -0.153 4.153 11 C -0.132 4.132 12 H 0.098 0.902 13 C -0.151 4.151 14 C 0.030 3.970 15 H 0.089 0.911 16 C -0.169 4.169 17 N -0.324 5.324 18 C -0.393 4.393 19 H 0.098 0.902 20 C -0.216 4.216 21 N -0.561 5.561 22 Si 0.760 3.240 23 H -0.183 1.183 24 H -0.223 1.223 25 H -0.208 1.208 26 C 0.006 3.994 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.285 0.715 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.939 1.996 5.355 8.242 hybrid contribution 1.530 -0.811 -0.259 1.751 sum -4.409 1.185 5.096 6.842 Atomic orbital electron populations 1.20840 0.91568 1.01422 1.02299 1.23817 0.97358 0.96882 0.92597 1.21703 0.96783 0.93729 1.07718 1.21373 0.91302 1.05686 1.02245 1.18719 0.87065 0.85691 0.76955 1.90622 1.14323 1.88565 1.53648 1.47728 1.14695 1.04351 1.69375 1.20808 0.93419 0.83979 0.97033 0.92062 1.21996 0.97114 1.01783 0.94379 1.22727 0.96047 0.96745 0.97680 0.90210 1.22890 0.97858 0.96298 0.98006 1.21936 0.94700 0.86974 0.93369 0.91098 1.22428 0.97582 0.97826 0.99085 1.44983 1.18502 1.11317 1.57618 1.19191 1.00090 1.13830 1.06177 0.90219 1.25524 0.99273 1.01351 0.95490 1.70100 1.42043 1.30326 1.13589 0.85956 0.80837 0.78665 0.78525 1.18348 1.22317 1.20782 1.22101 0.87359 0.95137 0.94775 0.92579 0.90625 0.91648 0.83968 0.91639 0.92330 0.87633 0.71475 0.93394 0.89312 0.88517 0.93013 0.88014 0.92452 0.94136 0.95711 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.30 8.45 71.24 0.60 -2.70 16 2 C -0.09 -2.90 9.95 24.52 0.24 -2.65 16 3 C -0.20 -7.80 6.00 -18.70 -0.11 -7.92 16 4 C -0.15 -6.02 8.70 71.24 0.62 -5.40 16 5 C 0.53 22.55 5.97 86.57 0.52 23.06 16 6 O -0.59 -25.95 11.66 -4.07 -0.05 -26.00 16 7 N -0.70 -28.83 2.73 -446.11 -1.22 -30.05 16 8 C 0.15 5.42 2.73 44.99 0.12 5.55 16 9 H 0.06 2.14 8.09 -2.39 -0.02 2.12 16 10 C -0.11 -3.93 5.14 30.93 0.16 -3.77 16 11 C -0.11 -4.19 4.36 -8.95 -0.04 -4.23 16 12 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 13 C -0.11 -3.64 6.17 32.16 0.20 -3.44 16 14 C 0.14 4.91 4.29 45.78 0.20 5.11 16 15 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 16 C -0.13 -4.02 5.42 30.89 0.17 -3.85 16 17 N -0.60 -26.83 1.74 -663.84 -1.16 -27.99 16 18 C -0.26 -12.82 7.60 84.03 0.64 -12.18 16 19 H 0.08 3.74 7.84 -2.91 -0.02 3.72 16 20 C -0.02 -0.93 3.32 84.86 0.28 -0.64 16 21 N -0.92 -49.70 10.72 21.65 0.23 -49.47 16 22 Si 0.93 40.58 28.09 68.60 1.93 42.51 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.13 6.09 4.54 86.96 0.40 6.49 16 27 H 0.06 2.01 7.26 -2.39 -0.02 1.99 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.20 7.18 -2.38 -0.02 2.18 16 30 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 31 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 33 H 0.11 4.77 2.16 -2.39 -0.01 4.77 16 34 H 0.43 18.85 2.41 -92.71 -0.22 18.63 16 35 H 0.05 1.88 6.65 -2.39 -0.02 1.87 16 36 H 0.09 2.45 7.98 -2.39 -0.02 2.44 16 37 H 0.10 2.43 7.75 -2.38 -0.02 2.41 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.10 2.42 8.00 -2.39 -0.02 2.40 16 40 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 42 H 0.02 1.37 6.27 -2.39 -0.01 1.35 16 43 H 0.04 2.08 3.96 -14.99 -0.06 2.02 16 Total: -1.00 -58.24 307.73 4.47 -53.78 By element: Atomic # 1 Polarization: 43.07 SS G_CDS: 0.74 Total: 43.80 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 3.99 Total: -6.58 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -2.14 Total: -107.51 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.93 Total: 42.51 kcal Total: -58.24 4.47 -53.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484320403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.982 kcal (2) G-P(sol) polarization free energy of solvation -58.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds