Wall clock time and date at job start Tue Mar 31 2020 00:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47116 * 120.00412 * 2 1 4 4 C 1.50699 * 119.99686 * 359.97438 * 3 2 1 5 5 C 1.32868 * 120.00412 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00311 * 174.08690 * 5 3 2 7 7 C 1.50696 * 109.47438 * 234.27521 * 6 5 3 8 8 O 1.21287 * 119.99954 * 0.28062 * 7 6 5 9 9 N 1.34773 * 120.00441 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00071 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47238 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.84883 * 43.80159 * 11 10 9 13 13 C 1.53777 * 113.61867 * 174.99608 * 11 10 9 14 14 C 1.53776 * 87.08413 * 139.98179 * 13 11 10 15 15 H 1.09005 * 113.61509 * 219.94128 * 14 13 11 16 16 N 1.46496 * 113.61573 * 89.11576 * 14 13 11 17 17 C 1.36939 * 120.00041 * 155.00237 * 16 14 13 18 18 H 1.08000 * 119.99766 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00071 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99867 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00017 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47202 * 89.99389 * 21 19 17 23 23 H 1.48497 * 109.47125 * 209.99459 * 21 19 17 24 24 H 1.48503 * 109.47091 * 329.99796 * 21 19 17 25 25 C 1.53777 * 113.61396 * 272.49545 * 11 10 9 26 26 H 1.07997 * 119.99315 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00040 * 179.97438 * 1 2 3 28 28 H 1.08006 * 120.00104 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47613 * 265.16124 * 4 3 2 30 30 H 1.09003 * 109.47275 * 25.16399 * 4 3 2 31 31 H 1.09005 * 109.47400 * 145.16073 * 4 3 2 32 32 H 1.08008 * 119.99668 * 354.08031 * 5 3 2 33 33 H 1.09004 * 109.47523 * 114.27622 * 6 5 3 34 34 H 1.09001 * 109.47230 * 354.27601 * 6 5 3 35 35 H 0.96995 * 119.99963 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.46923 * 299.99630 * 10 9 7 37 37 H 1.08999 * 109.47543 * 60.00116 * 10 9 7 38 38 H 1.09003 * 113.61782 * 254.53601 * 13 11 10 39 39 H 1.09004 * 113.61424 * 25.43127 * 13 11 10 40 40 H 0.96995 * 120.00083 * 335.00510 * 16 14 13 41 41 H 0.97003 * 119.99720 * 179.97438 * 20 19 17 42 42 H 1.09002 * 113.61710 * 334.56356 * 25 11 10 43 43 H 1.09000 * 113.61574 * 105.46954 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3109 2.5791 -0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1466 2.5721 -0.1339 7 6 5.1167 2.4731 -1.2829 8 8 5.1854 1.4510 -1.9322 9 7 5.9036 3.5225 -1.5928 10 6 6.8462 3.4264 -2.7102 11 6 7.6114 4.7442 -2.8466 12 1 7.9453 5.1410 -1.8879 13 6 8.7157 4.7076 -3.9162 14 6 8.2842 6.1333 -4.2981 15 1 8.2835 6.3163 -5.3726 16 7 8.9795 7.1788 -3.5434 17 6 9.1105 8.4343 -4.0743 18 1 8.7015 8.6536 -5.0495 19 6 9.7698 9.4249 -3.3594 20 7 10.2687 9.1575 -2.1712 21 14 9.9478 11.1377 -4.0833 22 1 8.7845 11.9684 -3.6811 23 1 11.1984 11.7604 -3.5798 24 1 10.0020 11.0460 -5.5645 25 6 6.8989 5.7816 -3.7303 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8687 -0.9353 0.0004 29 1 1.2046 2.9370 -1.0247 30 1 0.3235 2.4288 0.4360 31 1 1.8594 3.3157 0.5866 32 1 3.9330 0.3436 0.0974 33 1 4.6939 2.7717 0.7874 34 1 3.4429 3.3831 -0.3214 35 1 5.8458 4.3413 -1.0761 36 1 7.5502 2.6157 -2.5228 37 1 6.2988 3.2267 -3.6313 38 1 9.7226 4.6521 -3.5026 39 1 8.5386 3.9727 -4.7016 40 1 9.3472 6.9818 -2.6677 41 1 10.7297 9.8496 -1.6718 42 1 6.2252 5.3405 -4.4649 43 1 6.4392 6.5934 -3.1666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488845858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:02 Heat of formation + Delta-G solvation = 16.726550 kcal Electronic energy + Delta-G solvation = -20534.210899 eV Core-core repulsion = 17387.725058 eV Total energy + Delta-G solvation = -3146.485840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87439 -38.57032 -37.10011 -34.63247 -33.23580 -32.70049 -30.27936 -29.20495 -27.61232 -26.26027 -25.07087 -23.71354 -21.96626 -21.36247 -20.20037 -18.41325 -18.11034 -17.44123 -17.05537 -16.28669 -15.99939 -15.25132 -14.93119 -14.42897 -14.25476 -14.11515 -13.72230 -13.56699 -13.33343 -12.98269 -12.90198 -12.59710 -12.27022 -11.94795 -11.84350 -11.71448 -11.38526 -11.12080 -11.05858 -10.85985 -10.75809 -10.50433 -10.21203 -10.11861 -9.78457 -9.71479 -9.47590 -8.99506 -8.90131 -8.44683 -7.02755 -5.83403 -3.12406 1.09575 2.62561 2.75211 3.31501 3.39932 3.45459 3.47017 4.41278 4.53461 4.60654 4.72798 4.96692 5.01514 5.04259 5.06464 5.14549 5.20212 5.24185 5.37391 5.43041 5.44610 5.58866 5.61787 5.69919 5.73851 5.85725 5.94879 6.09296 6.11602 6.19884 6.23470 6.35571 6.42574 6.44171 6.57911 6.69626 6.72372 6.88599 7.02269 7.52175 7.66647 8.22515 8.35853 9.46538 10.04066 10.38307 11.39016 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.002505 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.650414 B =11175.403730 C =11621.589585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 C -0.113 4.113 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.120 4.120 7 C 0.514 3.486 8 O -0.544 6.544 9 N -0.725 5.725 10 C 0.131 3.869 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.148 4.148 14 C 0.167 3.833 15 H 0.062 0.938 16 N -0.706 5.706 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.168 4.168 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.403 0.597 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.067 0.933 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.700 -14.920 5.487 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.131 4.131 3 C -0.113 4.113 4 C -0.180 4.180 5 C -0.134 4.134 6 C -0.159 4.159 7 C 0.300 3.700 8 O -0.422 6.422 9 N -0.377 5.377 10 C 0.007 3.993 11 C -0.138 4.138 12 H 0.111 0.889 13 C -0.188 4.188 14 C 0.055 3.945 15 H 0.080 0.920 16 N -0.344 5.344 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.209 4.209 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.237 0.763 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.598 -15.459 4.901 22.501 hybrid contribution 0.230 1.214 0.283 1.267 sum -15.368 -14.245 5.183 21.586 Atomic orbital electron populations 1.24402 0.95711 1.02003 1.00687 1.21859 0.95301 0.96081 0.99882 1.20553 0.93909 0.94392 1.02437 1.20906 1.00232 0.94540 1.02368 1.22774 0.93851 0.97779 0.98959 1.20823 0.98335 0.98514 0.98256 1.20495 0.80964 0.83337 0.85212 1.90696 1.68683 1.30062 1.52744 1.46100 1.40261 1.16624 1.34697 1.21471 0.90867 0.98131 0.88784 1.22707 0.97742 0.94036 0.99317 0.88899 1.23446 0.98002 0.99593 0.97754 1.21057 0.90604 0.87470 0.95391 0.91974 1.42168 1.65061 1.07187 1.20010 1.19294 1.30005 0.87104 1.00924 0.90987 1.24769 1.00921 0.98456 0.96785 1.69659 1.42553 1.33269 1.12590 0.86162 0.77151 0.84451 0.78257 1.21684 1.21754 1.20691 1.23886 0.99848 0.98099 0.99090 0.88045 0.88205 0.86838 0.91334 0.91476 0.91248 0.86405 0.87821 0.87905 0.76324 0.91919 0.91665 0.91331 0.90480 0.78122 0.93439 0.91433 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 14.11 28.88 0.41 -1.00 16 2 C -0.11 -0.99 9.83 -37.83 -0.37 -1.36 16 3 C -0.11 -1.05 5.98 -102.87 -0.62 -1.66 16 4 C -0.12 -0.93 8.54 36.00 0.31 -0.62 16 5 C -0.12 -1.15 8.45 -36.16 -0.31 -1.45 16 6 C -0.12 -1.08 5.77 -29.04 -0.17 -1.24 16 7 C 0.51 6.48 7.82 -10.99 -0.09 6.39 16 8 O -0.54 -9.03 16.03 5.55 0.09 -8.94 16 9 N -0.73 -8.56 5.56 -60.30 -0.33 -8.89 16 10 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 11 C -0.12 -1.75 3.63 -89.81 -0.33 -2.07 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 13 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 14 C 0.17 3.21 4.56 -67.12 -0.31 2.91 16 15 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 16 N -0.71 -17.16 5.31 -52.64 -0.28 -17.44 16 17 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.17 -2.75 7.43 -25.92 -0.19 -2.94 16 26 H 0.10 0.67 6.06 -52.49 -0.32 0.35 16 27 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.11 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.43 6.19 -51.93 -0.32 0.11 16 31 H 0.07 0.45 6.70 -51.93 -0.35 0.10 16 32 H 0.12 1.24 8.05 -52.48 -0.42 0.81 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.77 5.79 -51.93 -0.30 0.47 16 35 H 0.40 3.97 8.47 -40.82 -0.35 3.62 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.91 7.84 -51.93 -0.41 0.51 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 40 H 0.38 9.88 7.90 -40.82 -0.32 9.56 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -31.74 357.55 -8.52 -40.26 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.97 Total: 10.57 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.12 Total: -11.09 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.11 Total: -53.15 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.74 -8.52 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488845858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.983 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds