Wall clock time and date at job start Tue Mar 31 2020 00:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47116 * 120.00412 * 2 1 4 4 C 1.50699 * 119.99686 * 359.97438 * 3 2 1 5 5 C 1.32868 * 120.00412 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00311 * 174.08690 * 5 3 2 7 7 C 1.50696 * 109.47438 * 234.27521 * 6 5 3 8 8 O 1.21287 * 119.99954 * 0.28062 * 7 6 5 9 9 N 1.34773 * 120.00441 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00071 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47238 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.84883 * 43.80159 * 11 10 9 13 13 C 1.53777 * 113.61867 * 174.99608 * 11 10 9 14 14 C 1.53776 * 87.08413 * 139.98179 * 13 11 10 15 15 H 1.09005 * 113.61509 * 219.94128 * 14 13 11 16 16 N 1.46496 * 113.61573 * 89.11576 * 14 13 11 17 17 C 1.36939 * 120.00041 * 155.00237 * 16 14 13 18 18 H 1.08000 * 119.99766 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00071 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99867 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00017 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47202 * 89.99389 * 21 19 17 23 23 H 1.48497 * 109.47125 * 209.99459 * 21 19 17 24 24 H 1.48503 * 109.47091 * 329.99796 * 21 19 17 25 25 C 1.53777 * 113.61396 * 272.49545 * 11 10 9 26 26 H 1.07997 * 119.99315 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00040 * 179.97438 * 1 2 3 28 28 H 1.08006 * 120.00104 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47613 * 265.16124 * 4 3 2 30 30 H 1.09003 * 109.47275 * 25.16399 * 4 3 2 31 31 H 1.09005 * 109.47400 * 145.16073 * 4 3 2 32 32 H 1.08008 * 119.99668 * 354.08031 * 5 3 2 33 33 H 1.09004 * 109.47523 * 114.27622 * 6 5 3 34 34 H 1.09001 * 109.47230 * 354.27601 * 6 5 3 35 35 H 0.96995 * 119.99963 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.46923 * 299.99630 * 10 9 7 37 37 H 1.08999 * 109.47543 * 60.00116 * 10 9 7 38 38 H 1.09003 * 113.61782 * 254.53601 * 13 11 10 39 39 H 1.09004 * 113.61424 * 25.43127 * 13 11 10 40 40 H 0.96995 * 120.00083 * 335.00510 * 16 14 13 41 41 H 0.97003 * 119.99720 * 179.97438 * 20 19 17 42 42 H 1.09002 * 113.61710 * 334.56356 * 25 11 10 43 43 H 1.09000 * 113.61574 * 105.46954 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3109 2.5791 -0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1466 2.5721 -0.1339 7 6 5.1167 2.4731 -1.2829 8 8 5.1854 1.4510 -1.9322 9 7 5.9036 3.5225 -1.5928 10 6 6.8462 3.4264 -2.7102 11 6 7.6114 4.7442 -2.8466 12 1 7.9453 5.1410 -1.8879 13 6 8.7157 4.7076 -3.9162 14 6 8.2842 6.1333 -4.2981 15 1 8.2835 6.3163 -5.3726 16 7 8.9795 7.1788 -3.5434 17 6 9.1105 8.4343 -4.0743 18 1 8.7015 8.6536 -5.0495 19 6 9.7698 9.4249 -3.3594 20 7 10.2687 9.1575 -2.1712 21 14 9.9478 11.1377 -4.0833 22 1 8.7845 11.9684 -3.6811 23 1 11.1984 11.7604 -3.5798 24 1 10.0020 11.0460 -5.5645 25 6 6.8989 5.7816 -3.7303 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8687 -0.9353 0.0004 29 1 1.2046 2.9370 -1.0247 30 1 0.3235 2.4288 0.4360 31 1 1.8594 3.3157 0.5866 32 1 3.9330 0.3436 0.0974 33 1 4.6939 2.7717 0.7874 34 1 3.4429 3.3831 -0.3214 35 1 5.8458 4.3413 -1.0761 36 1 7.5502 2.6157 -2.5228 37 1 6.2988 3.2267 -3.6313 38 1 9.7226 4.6521 -3.5026 39 1 8.5386 3.9727 -4.7016 40 1 9.3472 6.9818 -2.6677 41 1 10.7297 9.8496 -1.6718 42 1 6.2252 5.3405 -4.4649 43 1 6.4392 6.5934 -3.1666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488845858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:02 Heat of formation + Delta-G solvation = -2.969237 kcal Electronic energy + Delta-G solvation = -20535.064972 eV Core-core repulsion = 17387.725058 eV Total energy + Delta-G solvation = -3147.339914 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93651 -39.89340 -37.80508 -35.97656 -34.93047 -33.42987 -32.06708 -30.06064 -28.60304 -27.16515 -26.43105 -25.60504 -23.22619 -22.26637 -21.09765 -19.80133 -19.32447 -18.77340 -18.08067 -17.11534 -17.06566 -16.64961 -16.22734 -15.77479 -15.60369 -15.07698 -14.92770 -14.68031 -14.51691 -14.18518 -13.83346 -13.67249 -13.33407 -13.19663 -12.93296 -12.91074 -12.62574 -12.51134 -12.30626 -12.16487 -12.06220 -11.74707 -11.53866 -11.47583 -11.38627 -11.03545 -10.88546 -10.71927 -10.04204 -9.11227 -8.99525 -7.95110 -5.23236 0.43409 1.48707 1.49592 1.58164 1.66480 2.04518 2.41547 2.56122 3.37520 3.71519 3.74877 3.79969 3.81088 3.96157 4.04070 4.16743 4.33109 4.34462 4.41199 4.44512 4.45380 4.60570 4.74072 4.76700 4.82342 4.88893 4.93158 4.99885 5.00219 5.11916 5.14115 5.30431 5.36325 5.48448 5.50331 5.56738 5.60122 5.66935 5.79563 6.04843 6.28650 6.58971 7.27411 7.33751 8.10869 8.33353 9.28063 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.002505 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.650414 B =11175.403730 C =11621.589585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.143 4.143 3 C -0.110 4.110 4 C -0.126 4.126 5 C -0.140 4.140 6 C -0.109 4.109 7 C 0.512 3.488 8 O -0.588 6.588 9 N -0.719 5.719 10 C 0.139 3.861 11 C -0.101 4.101 12 H 0.083 0.917 13 C -0.136 4.136 14 C 0.143 3.857 15 H 0.059 0.941 16 N -0.719 5.719 17 C -0.242 4.242 18 H 0.076 0.924 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.270 1.270 25 C -0.152 4.152 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.413 0.587 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.090 0.910 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.439 -14.969 5.290 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.110 4.110 4 C -0.182 4.182 5 C -0.158 4.158 6 C -0.148 4.148 7 C 0.300 3.700 8 O -0.469 6.469 9 N -0.371 5.371 10 C 0.016 3.984 11 C -0.120 4.120 12 H 0.101 0.899 13 C -0.176 4.176 14 C 0.033 3.967 15 H 0.077 0.923 16 N -0.358 5.358 17 C -0.374 4.374 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.802 3.198 22 H -0.214 1.214 23 H -0.224 1.224 24 H -0.195 1.195 25 C -0.193 4.193 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.250 0.750 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.370 -15.519 4.682 23.758 hybrid contribution 0.672 1.127 0.293 1.344 sum -16.697 -14.392 4.975 22.598 Atomic orbital electron populations 1.24650 0.95243 1.03198 0.98036 1.21991 0.96059 0.96075 1.02004 1.20830 0.93909 0.95422 1.00881 1.20975 1.00804 0.93792 1.02666 1.22754 0.94299 0.97737 1.01046 1.20814 0.97863 0.98635 0.97532 1.21118 0.80933 0.82487 0.85477 1.90676 1.70066 1.31711 1.54450 1.46045 1.39684 1.17090 1.34283 1.21262 0.90928 0.96858 0.89379 1.22483 0.96907 0.94186 0.98379 0.89852 1.23356 0.97834 0.97666 0.98699 1.21384 0.92397 0.88070 0.94813 0.92324 1.42292 1.65921 1.07550 1.19991 1.19667 1.28601 0.88304 1.00818 0.90601 1.25548 1.01680 1.02127 0.97430 1.69807 1.44056 1.34067 1.13958 0.85151 0.76606 0.80095 0.77971 1.21392 1.22352 1.19536 1.23699 0.98254 0.97980 0.99336 0.87056 0.86814 0.87134 0.91377 0.90367 0.89973 0.87961 0.85581 0.85974 0.75034 0.92208 0.91788 0.92404 0.87844 0.79321 0.94028 0.89198 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 14.11 66.64 0.94 -1.30 16 2 C -0.14 -2.39 9.83 23.43 0.23 -2.15 16 3 C -0.11 -1.93 5.98 -18.71 -0.11 -2.04 16 4 C -0.13 -1.61 8.54 71.24 0.61 -1.00 16 5 C -0.14 -2.71 8.45 24.51 0.21 -2.51 16 6 C -0.11 -1.78 5.77 29.10 0.17 -1.62 16 7 C 0.51 12.30 7.82 87.66 0.69 12.99 16 8 O -0.59 -19.37 16.03 -3.05 -0.05 -19.42 16 9 N -0.72 -15.77 5.56 -463.07 -2.57 -18.35 16 10 C 0.14 3.48 5.51 86.38 0.48 3.96 16 11 C -0.10 -2.81 3.63 -10.27 -0.04 -2.85 16 12 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.14 -4.13 7.39 31.12 0.23 -3.90 16 14 C 0.14 5.40 4.56 45.52 0.21 5.61 16 15 H 0.06 2.23 8.10 -2.38 -0.02 2.21 16 16 N -0.72 -35.12 5.31 -320.45 -1.70 -36.83 16 17 C -0.24 -13.17 9.97 84.03 0.84 -12.33 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 20 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 21 Si 0.97 45.38 29.55 68.60 2.03 47.40 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 C -0.15 -4.73 7.43 31.12 0.23 -4.50 16 26 H 0.11 1.19 6.06 -2.91 -0.02 1.17 16 27 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 28 H 0.11 1.82 8.06 -2.91 -0.02 1.79 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.81 6.19 -2.39 -0.01 0.80 16 31 H 0.08 0.83 6.70 -2.38 -0.02 0.81 16 32 H 0.10 2.24 8.05 -2.91 -0.02 2.21 16 33 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.12 1.51 5.79 -2.39 -0.01 1.50 16 35 H 0.41 7.33 8.47 -92.71 -0.79 6.54 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.66 7.84 -2.39 -0.02 1.64 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 2.61 8.10 -2.38 -0.02 2.59 16 40 H 0.37 19.55 7.90 -92.71 -0.73 18.82 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.09 2.42 7.90 -2.39 -0.02 2.40 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.62 357.55 2.61 -66.01 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -0.52 Total: 34.40 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 5.14 Total: -15.43 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -3.99 Total: -112.96 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.62 2.61 -66.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488845858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.037 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds