Wall clock time and date at job start Tue Mar 31 2020 00:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47123 * 120.00019 * 2 1 4 4 C 1.50706 * 119.99859 * 5.49475 * 3 2 1 5 5 C 1.32869 * 119.99748 * 185.49449 * 3 2 1 6 6 C 1.50690 * 120.00399 * 6.25157 * 5 3 2 7 7 C 1.50695 * 109.47330 * 126.12307 * 6 5 3 8 8 O 1.21278 * 120.00214 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00061 * 180.27579 * 7 6 5 10 10 C 1.46498 * 120.00103 * 179.72335 * 9 7 6 11 11 C 1.53000 * 109.47564 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.84573 * 316.20055 * 11 10 9 13 13 C 1.53779 * 113.61458 * 87.50093 * 11 10 9 14 14 C 1.53779 * 87.08152 * 139.98534 * 13 11 10 15 15 H 1.09001 * 113.61656 * 220.02031 * 14 13 11 16 16 N 1.46503 * 113.69117 * 89.13006 * 14 13 11 17 17 C 1.36934 * 120.00210 * 107.46504 * 16 14 13 18 18 H 1.08002 * 119.99935 * 0.02562 * 17 16 14 19 19 C 1.38806 * 119.99976 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00325 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99978 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46971 * 89.99699 * 21 19 17 23 23 H 1.48495 * 109.47313 * 209.99880 * 21 19 17 24 24 H 1.48501 * 109.47087 * 330.00130 * 21 19 17 25 25 C 1.53775 * 87.08177 * 334.56857 * 14 13 11 26 26 H 1.08004 * 119.99884 * 0.02562 * 1 2 3 27 27 H 1.07992 * 120.00091 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00091 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46771 * 269.99917 * 4 3 2 30 30 H 1.08998 * 109.47073 * 29.99989 * 4 3 2 31 31 H 1.08994 * 109.46910 * 149.99810 * 4 3 2 32 32 H 1.08002 * 119.99198 * 186.25091 * 5 3 2 33 33 H 1.09001 * 109.46910 * 6.12294 * 6 5 3 34 34 H 1.08998 * 109.47084 * 246.12557 * 6 5 3 35 35 H 0.97003 * 120.00068 * 359.72255 * 9 7 6 36 36 H 1.09001 * 109.47531 * 300.00050 * 10 9 7 37 37 H 1.09001 * 109.47220 * 60.00000 * 10 9 7 38 38 H 1.09001 * 113.61732 * 254.53766 * 13 11 10 39 39 H 1.09006 * 113.61357 * 25.43810 * 13 11 10 40 40 H 0.97001 * 119.99681 * 287.47006 * 16 14 13 41 41 H 0.96998 * 119.99703 * 180.02562 * 20 19 17 42 42 H 1.08997 * 113.61572 * 270.88565 * 25 14 13 43 43 H 1.09005 * 113.69360 * 139.98643 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3160 2.5763 0.1250 5 6 3.3884 1.2767 -0.1102 6 6 4.1250 -0.0108 -0.3762 7 6 5.0036 0.1546 -1.5893 8 8 5.0289 1.2135 -2.1800 9 7 5.7568 -0.8762 -2.0214 10 6 6.6063 -0.7174 -3.2043 11 6 7.3505 -2.0260 -3.4773 12 1 7.7586 -2.4774 -2.5730 13 6 6.5628 -3.0104 -4.3579 14 6 7.8954 -3.3305 -5.0554 15 1 7.8052 -3.4512 -6.1349 16 7 8.6449 -4.4183 -4.4220 17 6 8.7249 -5.6411 -5.0331 18 1 8.2358 -5.8035 -5.9822 19 6 9.4347 -6.6719 -4.4327 20 7 10.0312 -6.4738 -3.2762 21 14 9.5432 -8.3402 -5.2659 22 1 10.7320 -8.3729 -6.1553 23 1 9.6672 -9.4015 -4.2347 24 1 8.3168 -8.5725 -6.0704 25 6 8.3646 -1.9294 -4.6293 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8687 -0.9353 0.0004 29 1 1.0504 2.9393 -0.8678 30 1 0.4092 2.4195 0.7092 31 1 1.9471 3.3115 0.6240 32 1 3.9368 2.2016 -0.0091 33 1 3.4060 -0.8104 -0.5546 34 1 4.7410 -0.2620 0.4871 35 1 5.7363 -1.7233 -1.5492 36 1 5.9873 -0.4646 -4.0651 37 1 7.3279 0.0806 -3.0289 38 1 6.1455 -3.8526 -3.8058 39 1 5.8342 -2.5271 -5.0089 40 1 9.0845 -4.2723 -3.5697 41 1 10.5275 -7.1941 -2.8569 42 1 8.1286 -1.1506 -5.3544 43 1 9.4020 -1.8974 -4.2961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488845859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:05 Heat of formation + Delta-G solvation = -1.887691 kcal Electronic energy + Delta-G solvation = -20575.207348 eV Core-core repulsion = 17427.914334 eV Total energy + Delta-G solvation = -3147.293014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93954 -39.89667 -37.82301 -35.97985 -34.93371 -32.99035 -32.05959 -30.91384 -28.74677 -26.44164 -26.33895 -25.46483 -23.14869 -22.67038 -21.53103 -19.83574 -19.33711 -18.52531 -17.98316 -17.21181 -16.85952 -16.67384 -16.16616 -15.70658 -15.67481 -15.32350 -14.91060 -14.66699 -14.40567 -14.19535 -13.78505 -13.45955 -13.30484 -13.24755 -12.99585 -12.90804 -12.87135 -12.62815 -12.43836 -12.15457 -12.05854 -11.59675 -11.49606 -11.47559 -11.32282 -11.03555 -10.89270 -10.72153 -10.04403 -9.12390 -8.99972 -7.95454 -5.23671 0.44355 1.48372 1.49425 1.57862 1.66154 2.04570 2.41308 2.55854 3.37231 3.71056 3.74722 3.79505 3.80510 3.95792 4.02160 4.15963 4.24371 4.32902 4.41140 4.44191 4.59074 4.68076 4.73307 4.75057 4.80648 4.83482 4.92730 4.94445 4.99452 5.11726 5.15463 5.29850 5.35861 5.49729 5.49908 5.56221 5.58685 5.66441 5.82634 6.04475 6.28379 6.58304 7.26769 7.33433 8.10425 8.32936 9.27815 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.002626 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.057686 B =10658.033075 C =11238.875827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.148 4.148 3 C -0.111 4.111 4 C -0.117 4.117 5 C -0.139 4.139 6 C -0.112 4.112 7 C 0.512 3.488 8 O -0.587 6.587 9 N -0.720 5.720 10 C 0.140 3.860 11 C -0.101 4.101 12 H 0.083 0.917 13 C -0.153 4.153 14 C 0.144 3.856 15 H 0.059 0.941 16 N -0.719 5.719 17 C -0.242 4.242 18 H 0.076 0.924 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.972 3.028 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.270 1.270 25 C -0.136 4.136 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.413 0.587 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.103 0.897 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.895 14.711 7.473 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.111 4.111 4 C -0.174 4.174 5 C -0.158 4.158 6 C -0.151 4.151 7 C 0.300 3.700 8 O -0.468 6.468 9 N -0.372 5.372 10 C 0.016 3.984 11 C -0.120 4.120 12 H 0.101 0.899 13 C -0.193 4.193 14 C 0.034 3.966 15 H 0.077 0.923 16 N -0.358 5.358 17 C -0.374 4.374 18 H 0.094 0.906 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.801 3.199 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.195 1.195 25 C -0.175 4.175 26 H 0.125 0.875 27 H 0.132 0.868 28 H 0.144 0.856 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.249 0.751 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.122 0.878 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.886 15.300 6.904 23.809 hybrid contribution 0.677 -1.336 0.164 1.507 sum -16.209 13.964 7.068 22.532 Atomic orbital electron populations 1.24666 0.95525 1.03074 0.97761 1.22124 0.95967 0.96317 1.02161 1.20838 0.93847 0.95387 1.01052 1.20835 1.00511 0.93691 1.02338 1.22790 0.94464 0.97799 1.00720 1.20847 0.99110 0.98907 0.96213 1.21116 0.79821 0.83038 0.86026 1.90668 1.67582 1.28865 1.59683 1.46053 1.44697 1.15749 1.30651 1.21263 0.92676 0.96805 0.87667 1.22490 0.97200 0.94509 0.97807 0.89863 1.23701 0.98099 0.98285 0.99223 1.21379 0.92085 0.87593 0.95583 0.92312 1.42295 1.60766 1.08530 1.24176 1.19665 1.25760 0.89226 1.02733 0.90603 1.25543 1.01103 1.01980 0.98121 1.69807 1.40007 1.33283 1.18849 0.85156 0.77965 0.79600 0.77137 1.21542 1.22231 1.19454 1.23352 0.98364 0.97884 0.97914 0.87493 0.86784 0.85640 0.91432 0.90509 0.91315 0.87391 0.86306 0.85698 0.75083 0.91794 0.92155 0.93174 0.89204 0.79324 0.94008 0.87825 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 14.07 66.64 0.94 -1.23 16 2 C -0.15 -2.23 9.20 23.43 0.22 -2.02 16 3 C -0.11 -1.93 5.98 -18.70 -0.11 -2.04 16 4 C -0.12 -1.67 9.38 71.24 0.67 -1.00 16 5 C -0.14 -2.68 8.43 24.51 0.21 -2.48 16 6 C -0.11 -1.88 5.92 29.10 0.17 -1.71 16 7 C 0.51 12.44 7.82 87.66 0.69 13.13 16 8 O -0.59 -19.30 16.03 -3.02 -0.05 -19.35 16 9 N -0.72 -16.01 5.56 -463.07 -2.57 -18.58 16 10 C 0.14 3.51 5.51 86.38 0.48 3.99 16 11 C -0.10 -2.84 3.63 -10.27 -0.04 -2.88 16 12 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 13 C -0.15 -4.77 7.43 31.12 0.23 -4.54 16 14 C 0.14 5.43 4.56 45.51 0.21 5.63 16 15 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 16 N -0.72 -35.24 5.31 -320.46 -1.70 -36.95 16 17 C -0.24 -13.20 9.97 84.03 0.84 -12.36 16 18 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 20 N -0.97 -58.24 13.06 21.65 0.28 -57.95 16 21 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 C -0.14 -4.13 7.39 31.12 0.23 -3.90 16 26 H 0.11 1.17 6.31 -2.91 -0.02 1.15 16 27 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 28 H 0.13 1.61 6.00 -2.91 -0.02 1.59 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.86 6.67 -2.39 -0.02 0.84 16 31 H 0.07 0.91 8.06 -2.39 -0.02 0.89 16 32 H 0.11 2.27 8.04 -2.91 -0.02 2.25 16 33 H 0.12 1.61 5.41 -2.39 -0.01 1.59 16 34 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.41 7.50 8.47 -92.71 -0.79 6.71 16 36 H 0.06 1.66 7.84 -2.39 -0.02 1.65 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 2.44 7.90 -2.38 -0.02 2.42 16 40 H 0.37 19.61 7.90 -92.71 -0.73 18.88 16 41 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.10 2.62 8.10 -2.39 -0.02 2.60 16 43 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -68.32 357.49 2.66 -65.66 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.51 Total: 34.90 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.19 Total: -15.20 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -3.99 Total: -113.48 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.32 2.66 -65.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488845859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.775 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds