Wall clock time and date at job start Tue Mar 31 2020 00:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47126 * 119.99550 * 2 1 4 4 C 1.50694 * 119.99879 * 5.49776 * 3 2 1 5 5 C 1.32868 * 119.99637 * 185.49616 * 3 2 1 6 6 C 1.50695 * 120.00372 * 6.24908 * 5 3 2 7 7 C 1.50695 * 109.47008 * 126.12572 * 6 5 3 8 8 O 1.21281 * 120.00521 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00085 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00174 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46965 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.78639 * 56.78541 * 11 10 9 13 13 C 1.55163 * 110.72034 * 180.02562 * 11 10 9 14 14 C 1.54910 * 101.58309 * 153.86221 * 13 11 10 15 15 N 1.47424 * 104.83485 * 322.99542 * 14 13 11 16 16 C 1.36934 * 125.64908 * 204.16154 * 15 14 13 17 17 H 1.08004 * 119.99858 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99876 * 359.95798 * 16 15 14 19 19 N 1.31618 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99705 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47089 * 89.99999 * 20 18 16 22 22 H 1.48500 * 109.46947 * 209.99996 * 20 18 16 23 23 H 1.48498 * 109.47496 * 330.00110 * 20 18 16 24 24 C 1.47025 * 108.70121 * 24.12309 * 15 14 13 25 25 H 1.07997 * 120.00346 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99319 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00346 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47120 * 269.99848 * 4 3 2 29 29 H 1.08998 * 109.47781 * 29.99796 * 4 3 2 30 30 H 1.09000 * 109.47298 * 149.99766 * 4 3 2 31 31 H 1.08002 * 119.99330 * 186.25198 * 5 3 2 32 32 H 1.08998 * 109.46848 * 6.12498 * 6 5 3 33 33 H 1.09001 * 109.47066 * 246.12405 * 6 5 3 34 34 H 0.97005 * 119.99841 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47306 * 59.99910 * 10 9 7 36 36 H 1.09001 * 109.47052 * 299.99546 * 10 9 7 37 37 H 1.08998 * 111.00538 * 271.94255 * 13 11 10 38 38 H 1.09002 * 111.00173 * 35.79386 * 13 11 10 39 39 H 1.08997 * 110.36835 * 204.15047 * 14 13 11 40 40 H 1.09004 * 110.45558 * 81.87885 * 14 13 11 41 41 H 0.96997 * 119.99465 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.88371 * 239.52146 * 24 15 14 43 43 H 1.09010 * 110.00875 * 118.43317 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 1.3159 2.5762 0.1250 5 6 3.3884 1.2769 -0.1102 6 6 4.1250 -0.0106 -0.3762 7 6 5.0036 0.1549 -1.5893 8 8 5.0289 1.2138 -2.1800 9 7 5.7607 -0.8743 -2.0185 10 6 6.6145 -0.7136 -3.1981 11 6 7.3624 -2.0207 -3.4681 12 1 6.6634 -2.8477 -3.5931 13 6 8.2775 -1.8824 -4.7135 14 6 9.3705 -2.9390 -4.4153 15 7 9.5805 -2.8638 -2.9580 16 6 10.7191 -3.2374 -2.2955 17 1 10.7744 -3.1427 -1.2210 18 6 11.8021 -3.7384 -3.0048 19 7 11.7344 -3.8546 -4.3141 20 14 13.3557 -4.2474 -2.1010 21 1 13.2600 -5.6796 -1.7200 22 1 14.5312 -4.0481 -2.9863 23 1 13.5109 -3.4193 -0.8782 24 6 8.3652 -2.3203 -2.3340 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8688 -0.9352 0.0004 28 1 1.0502 2.9393 -0.8678 29 1 0.4091 2.4195 0.7092 30 1 1.9470 3.3116 0.6240 31 1 3.9367 2.2018 -0.0091 32 1 3.4061 -0.8103 -0.5546 33 1 4.7411 -0.2617 0.4871 34 1 5.7403 -1.7214 -1.5462 35 1 7.3336 0.0859 -3.0201 36 1 5.9980 -0.4624 -4.0613 37 1 7.7349 -2.1284 -5.6263 38 1 8.7070 -0.8824 -4.7736 39 1 10.2909 -2.6924 -4.9445 40 1 9.0260 -3.9337 -4.6981 41 1 12.4910 -4.2050 -4.8096 42 1 8.6030 -1.4019 -1.7972 43 1 7.9398 -3.0517 -1.6467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493228109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:09 Heat of formation + Delta-G solvation = 12.688578 kcal Electronic energy + Delta-G solvation = -20938.616977 eV Core-core repulsion = 17791.956037 eV Total energy + Delta-G solvation = -3146.660940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.77160 -37.77914 -37.03103 -34.61498 -32.61448 -32.13747 -30.38774 -29.64493 -28.22650 -26.10314 -25.09672 -23.35432 -22.06008 -20.73404 -19.93578 -19.60027 -17.85239 -17.17171 -16.72770 -16.15622 -15.99721 -15.25009 -14.94351 -14.66988 -14.22501 -13.88059 -13.65769 -13.36101 -13.04334 -12.74892 -12.58473 -12.51695 -12.18983 -11.81552 -11.74010 -11.68074 -11.48435 -10.96397 -10.89377 -10.81722 -10.68676 -10.43705 -10.14711 -10.02145 -9.91373 -9.73464 -9.50692 -8.94083 -8.66255 -8.44288 -6.84878 -5.66751 -3.08487 1.11157 2.69199 2.75044 3.36740 3.38947 3.43868 3.46008 4.42631 4.47479 4.62311 4.73862 4.89170 5.08617 5.15932 5.24169 5.26426 5.30306 5.39369 5.41054 5.47499 5.51672 5.52101 5.69599 5.78775 5.88689 6.07318 6.10777 6.14421 6.19612 6.33617 6.46455 6.49174 6.54049 6.58270 6.70537 6.71845 6.89979 7.50230 7.57598 7.61350 7.84585 8.28415 8.35332 9.20846 9.81845 10.46689 11.37266 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034401 B = 0.002731 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.728447 B =10248.919066 C =10516.367977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.121 4.121 7 C 0.514 3.486 8 O -0.543 6.543 9 N -0.726 5.726 10 C 0.133 3.867 11 C -0.115 4.115 12 H 0.076 0.924 13 C -0.135 4.135 14 C 0.151 3.849 15 N -0.605 5.605 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.142 3.858 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.401 0.599 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.916 7.019 7.121 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.142 4.142 3 C -0.115 4.115 4 C -0.170 4.170 5 C -0.131 4.131 6 C -0.160 4.160 7 C 0.300 3.700 8 O -0.420 6.420 9 N -0.378 5.378 10 C 0.009 3.991 11 C -0.134 4.134 12 H 0.094 0.906 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.016 3.984 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.235 0.765 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -19.666 7.703 6.643 22.141 hybrid contribution 0.801 -0.878 0.682 1.370 sum -18.865 6.825 7.325 21.357 Atomic orbital electron populations 1.24418 0.95749 1.02007 1.00093 1.21989 0.95376 0.96365 1.00444 1.20554 0.93860 0.94353 1.02734 1.20770 0.99963 0.94193 1.02121 1.22815 0.94005 0.97861 0.98464 1.20855 0.99208 0.98624 0.97358 1.20486 0.80121 0.83851 0.85531 1.90696 1.66268 1.27068 1.58009 1.46109 1.44795 1.15385 1.31493 1.21438 0.92667 0.98124 0.86854 1.22446 0.96913 0.95646 0.98407 0.90605 1.23009 0.97787 1.01588 0.95081 1.21934 0.97055 0.93109 0.85232 1.44506 1.11091 1.74668 1.02810 1.19076 0.89961 1.34934 0.91175 0.90540 1.24797 0.98512 1.01617 0.95807 1.69797 1.30618 1.51725 1.04963 0.86067 0.82693 0.78322 0.78382 1.21635 1.21620 1.20700 1.21317 0.87605 0.96084 0.93433 0.88136 0.88180 0.86479 0.91317 0.91867 0.91629 0.86181 0.88050 0.87788 0.76459 0.91306 0.91763 0.92126 0.91838 0.87545 0.96996 0.93710 0.95828 0.96461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 14.07 28.88 0.41 -0.94 16 2 C -0.12 -1.04 9.20 -37.83 -0.35 -1.39 16 3 C -0.11 -1.08 5.98 -102.87 -0.61 -1.69 16 4 C -0.11 -0.89 9.38 36.00 0.34 -0.56 16 5 C -0.11 -1.17 8.43 -36.16 -0.30 -1.47 16 6 C -0.12 -1.15 5.92 -29.04 -0.17 -1.32 16 7 C 0.51 6.83 7.82 -10.99 -0.09 6.74 16 8 O -0.54 -9.41 16.03 5.56 0.09 -9.32 16 9 N -0.73 -9.17 5.40 -60.30 -0.33 -9.49 16 10 C 0.13 1.97 4.99 -4.04 -0.02 1.95 16 11 C -0.11 -1.90 3.02 -88.78 -0.27 -2.16 16 12 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 13 C -0.14 -2.51 6.53 -24.58 -0.16 -2.67 16 14 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16 15 N -0.60 -15.42 3.39 -170.06 -0.58 -15.99 16 16 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 17 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 20 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.14 2.85 6.52 -3.06 -0.02 2.83 16 25 H 0.10 0.66 6.31 -52.49 -0.33 0.33 16 26 H 0.10 0.59 8.06 -52.48 -0.42 0.17 16 27 H 0.12 0.85 6.00 -52.49 -0.31 0.53 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.42 6.67 -51.93 -0.35 0.07 16 30 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 31 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 32 H 0.10 0.78 5.41 -51.93 -0.28 0.50 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.40 4.17 8.33 -40.82 -0.34 3.83 16 35 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 39 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.49 7.77 -51.93 -0.40 0.08 16 43 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -32.55 349.07 -8.46 -41.01 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.93 Total: 1.70 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.52 Total: -3.85 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.34 Total: -51.82 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.55 -8.46 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.695 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds