Wall clock time and date at job start Tue Mar 31 2020 00:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47126 * 119.99550 * 2 1 4 4 C 1.50694 * 119.99879 * 5.49776 * 3 2 1 5 5 C 1.32868 * 119.99637 * 185.49616 * 3 2 1 6 6 C 1.50695 * 120.00372 * 6.24908 * 5 3 2 7 7 C 1.50695 * 109.47008 * 126.12572 * 6 5 3 8 8 O 1.21281 * 120.00521 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00085 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00174 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46965 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.78639 * 56.78541 * 11 10 9 13 13 C 1.55163 * 110.72034 * 180.02562 * 11 10 9 14 14 C 1.54910 * 101.58309 * 153.86221 * 13 11 10 15 15 N 1.47424 * 104.83485 * 322.99542 * 14 13 11 16 16 C 1.36934 * 125.64908 * 204.16154 * 15 14 13 17 17 H 1.08004 * 119.99858 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99876 * 359.95798 * 16 15 14 19 19 N 1.31618 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99705 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47089 * 89.99999 * 20 18 16 22 22 H 1.48500 * 109.46947 * 209.99996 * 20 18 16 23 23 H 1.48498 * 109.47496 * 330.00110 * 20 18 16 24 24 C 1.47025 * 108.70121 * 24.12309 * 15 14 13 25 25 H 1.07997 * 120.00346 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99319 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00346 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47120 * 269.99848 * 4 3 2 29 29 H 1.08998 * 109.47781 * 29.99796 * 4 3 2 30 30 H 1.09000 * 109.47298 * 149.99766 * 4 3 2 31 31 H 1.08002 * 119.99330 * 186.25198 * 5 3 2 32 32 H 1.08998 * 109.46848 * 6.12498 * 6 5 3 33 33 H 1.09001 * 109.47066 * 246.12405 * 6 5 3 34 34 H 0.97005 * 119.99841 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47306 * 59.99910 * 10 9 7 36 36 H 1.09001 * 109.47052 * 299.99546 * 10 9 7 37 37 H 1.08998 * 111.00538 * 271.94255 * 13 11 10 38 38 H 1.09002 * 111.00173 * 35.79386 * 13 11 10 39 39 H 1.08997 * 110.36835 * 204.15047 * 14 13 11 40 40 H 1.09004 * 110.45558 * 81.87885 * 14 13 11 41 41 H 0.96997 * 119.99465 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.88371 * 239.52146 * 24 15 14 43 43 H 1.09010 * 110.00875 * 118.43317 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 1.3159 2.5762 0.1250 5 6 3.3884 1.2769 -0.1102 6 6 4.1250 -0.0106 -0.3762 7 6 5.0036 0.1549 -1.5893 8 8 5.0289 1.2138 -2.1800 9 7 5.7607 -0.8743 -2.0185 10 6 6.6145 -0.7136 -3.1981 11 6 7.3624 -2.0207 -3.4681 12 1 6.6634 -2.8477 -3.5931 13 6 8.2775 -1.8824 -4.7135 14 6 9.3705 -2.9390 -4.4153 15 7 9.5805 -2.8638 -2.9580 16 6 10.7191 -3.2374 -2.2955 17 1 10.7744 -3.1427 -1.2210 18 6 11.8021 -3.7384 -3.0048 19 7 11.7344 -3.8546 -4.3141 20 14 13.3557 -4.2474 -2.1010 21 1 13.2600 -5.6796 -1.7200 22 1 14.5312 -4.0481 -2.9863 23 1 13.5109 -3.4193 -0.8782 24 6 8.3652 -2.3203 -2.3340 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8688 -0.9352 0.0004 28 1 1.0502 2.9393 -0.8678 29 1 0.4091 2.4195 0.7092 30 1 1.9470 3.3116 0.6240 31 1 3.9367 2.2018 -0.0091 32 1 3.4061 -0.8103 -0.5546 33 1 4.7411 -0.2617 0.4871 34 1 5.7403 -1.7214 -1.5462 35 1 7.3336 0.0859 -3.0201 36 1 5.9980 -0.4624 -4.0613 37 1 7.7349 -2.1284 -5.6263 38 1 8.7070 -0.8824 -4.7736 39 1 10.2909 -2.6924 -4.9445 40 1 9.0260 -3.9337 -4.6981 41 1 12.4910 -4.2050 -4.8096 42 1 8.6030 -1.4019 -1.7972 43 1 7.9398 -3.0517 -1.6467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493228109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:08 Heat of formation + Delta-G solvation = -7.422496 kcal Electronic energy + Delta-G solvation = -20939.489059 eV Core-core repulsion = 17791.956037 eV Total energy + Delta-G solvation = -3147.533022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85671 -39.30104 -37.80281 -36.01487 -34.31305 -32.95697 -31.68547 -30.84613 -29.73920 -27.48064 -26.41841 -24.80870 -22.74018 -22.20160 -21.39159 -20.99922 -18.91996 -18.50960 -17.97197 -17.31829 -16.87288 -16.74852 -16.37527 -15.82673 -15.56927 -15.23064 -14.72184 -14.30086 -14.26776 -14.18666 -13.54577 -13.49191 -13.37672 -13.21091 -13.12321 -12.92381 -12.78313 -12.67860 -12.43390 -12.01670 -11.90047 -11.82626 -11.58906 -11.50759 -11.37155 -11.30366 -10.86756 -10.73796 -10.06581 -9.10934 -8.88150 -7.77744 -5.21848 0.45898 1.46409 1.48194 1.56925 1.67814 2.05463 2.41147 2.49654 3.31959 3.63707 3.75740 3.78630 3.94102 3.99719 4.02830 4.07077 4.25174 4.43971 4.47413 4.60794 4.65357 4.69407 4.70753 4.78086 4.81418 4.85530 4.92054 4.95932 5.06514 5.12967 5.16389 5.36693 5.45286 5.49467 5.51645 5.60190 5.65909 5.82894 5.84117 6.06156 6.31884 6.59723 7.11126 7.28721 7.79217 8.42664 9.24304 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034401 B = 0.002731 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.728447 B =10248.919066 C =10516.367977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.147 4.147 3 C -0.110 4.110 4 C -0.118 4.118 5 C -0.141 4.141 6 C -0.110 4.110 7 C 0.512 3.488 8 O -0.588 6.588 9 N -0.718 5.718 10 C 0.144 3.856 11 C -0.093 4.093 12 H 0.097 0.903 13 C -0.124 4.124 14 C 0.152 3.848 15 N -0.629 5.629 16 C -0.239 4.239 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.270 1.270 24 C 0.138 3.862 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.415 0.585 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.070 0.930 40 H -0.009 1.009 41 H 0.247 0.753 42 H 0.020 0.980 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.930 6.613 8.373 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.110 4.110 4 C -0.174 4.174 5 C -0.159 4.159 6 C -0.149 4.149 7 C 0.300 3.700 8 O -0.469 6.469 9 N -0.371 5.371 10 C 0.020 3.980 11 C -0.112 4.112 12 H 0.116 0.884 13 C -0.163 4.163 14 C 0.027 3.973 15 N -0.355 5.355 16 C -0.368 4.368 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.195 1.195 24 C 0.013 3.987 25 H 0.123 0.877 26 H 0.134 0.866 27 H 0.146 0.854 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.251 0.749 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.009 0.991 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -21.711 7.285 7.931 24.235 hybrid contribution 1.329 -0.731 0.314 1.549 sum -20.382 6.554 8.245 22.943 Atomic orbital electron populations 1.24669 0.95515 1.03076 0.97753 1.22121 0.95934 0.96247 1.02144 1.20830 0.93761 0.95465 1.00980 1.20838 1.00513 0.93770 1.02325 1.22789 0.94526 0.97813 1.00808 1.20843 0.99080 0.98941 0.95999 1.21166 0.79857 0.82960 0.86013 1.90677 1.67735 1.28829 1.59613 1.46003 1.44105 1.16070 1.30872 1.21152 0.92510 0.96255 0.88115 1.22286 0.96097 0.97232 0.95635 0.88440 1.22854 0.96620 0.99436 0.97362 1.21727 0.97259 0.93686 0.84655 1.44835 1.12208 1.74794 1.03700 1.19460 0.91146 1.34499 0.91672 0.90170 1.25650 1.01577 1.02295 0.96657 1.70058 1.31051 1.52606 1.06246 0.85049 0.78698 0.77986 0.77421 1.21222 1.22048 1.19500 1.21496 0.86704 0.95782 0.94714 0.87652 0.86615 0.85362 0.91439 0.90440 0.91506 0.87737 0.85801 0.85768 0.74869 0.93260 0.91018 0.89275 0.92112 0.91221 0.99085 0.94351 0.96222 0.95063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 14.07 66.64 0.94 -1.08 16 2 C -0.15 -2.09 9.20 23.43 0.22 -1.87 16 3 C -0.11 -1.91 5.98 -18.71 -0.11 -2.02 16 4 C -0.12 -1.71 9.38 71.23 0.67 -1.04 16 5 C -0.14 -2.78 8.43 24.51 0.21 -2.57 16 6 C -0.11 -1.85 5.92 29.10 0.17 -1.68 16 7 C 0.51 12.84 7.82 87.66 0.69 13.53 16 8 O -0.59 -20.17 16.03 -3.03 -0.05 -20.21 16 9 N -0.72 -16.53 5.40 -463.07 -2.50 -19.03 16 10 C 0.14 4.00 4.99 86.38 0.43 4.43 16 11 C -0.09 -2.89 3.02 -9.60 -0.03 -2.92 16 12 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.12 -4.45 6.53 31.99 0.21 -4.25 16 14 C 0.15 7.43 5.89 86.86 0.51 7.94 16 15 N -0.63 -32.22 3.39 -691.96 -2.35 -34.57 16 16 C -0.24 -13.41 10.27 84.03 0.86 -12.54 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 19 N -0.95 -56.89 10.09 21.65 0.22 -56.67 16 20 Si 0.98 45.74 29.55 68.60 2.03 47.76 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.14 5.39 6.52 86.73 0.57 5.95 16 25 H 0.11 1.10 6.31 -2.91 -0.02 1.08 16 26 H 0.12 0.98 8.06 -2.91 -0.02 0.95 16 27 H 0.13 1.46 6.00 -2.91 -0.02 1.44 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.87 6.67 -2.39 -0.02 0.85 16 30 H 0.07 0.93 8.06 -2.39 -0.02 0.91 16 31 H 0.10 2.32 8.04 -2.91 -0.02 2.30 16 32 H 0.12 1.53 5.41 -2.39 -0.01 1.51 16 33 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.41 7.35 8.33 -92.70 -0.77 6.57 16 35 H 0.05 1.59 8.06 -2.39 -0.02 1.57 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 39 H 0.07 3.94 5.87 -2.39 -0.01 3.93 16 40 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.02 0.79 7.77 -2.38 -0.02 0.77 16 43 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -71.96 349.07 3.36 -68.60 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.22 Total: 15.73 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.79 Total: -1.61 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.63 Total: -110.28 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.05 Total: -20.21 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.96 3.36 -68.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.177 kcal (2) G-P(sol) polarization free energy of solvation -71.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds