Wall clock time and date at job start Tue Mar 31 2020 00:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47114 * 120.00093 * 2 1 4 4 C 1.50703 * 119.99923 * 5.49069 * 3 2 1 5 5 C 1.32873 * 120.00230 * 185.49811 * 3 2 1 6 6 C 1.50707 * 119.99816 * 6.24392 * 5 3 2 7 7 C 1.50701 * 109.46879 * 126.12980 * 6 5 3 8 8 O 1.21284 * 119.99854 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99662 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99921 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47228 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.88687 * 308.87800 * 11 10 9 13 13 C 1.55158 * 111.00619 * 184.99928 * 11 10 9 14 14 C 1.54323 * 102.94142 * 206.42492 * 13 11 10 15 15 N 1.47018 * 107.40346 * 22.11331 * 14 13 11 16 16 C 1.36941 * 125.64623 * 181.10883 * 15 14 13 17 17 H 1.08000 * 120.00050 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00190 * 0.02562 * 16 15 14 19 19 N 1.31624 * 119.99682 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00258 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46961 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46987 * 120.00348 * 20 18 16 23 23 H 1.48500 * 109.47027 * 240.00066 * 20 18 16 24 24 C 1.47745 * 108.53251 * 1.18011 * 15 14 13 25 25 H 1.07997 * 120.00011 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99781 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.00299 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47405 * 270.00182 * 4 3 2 29 29 H 1.08995 * 109.47194 * 30.00624 * 4 3 2 30 30 H 1.09001 * 109.46922 * 150.00647 * 4 3 2 31 31 H 1.08000 * 120.00021 * 186.25216 * 5 3 2 32 32 H 1.08995 * 109.46749 * 6.12580 * 6 5 3 33 33 H 1.09002 * 109.46547 * 246.12780 * 6 5 3 34 34 H 0.97000 * 120.00049 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47376 * 59.99592 * 10 9 7 36 36 H 1.09000 * 109.46607 * 299.99656 * 10 9 7 37 37 H 1.09001 * 110.71850 * 88.05568 * 13 11 10 38 38 H 1.09004 * 110.87088 * 324.85663 * 13 11 10 39 39 H 1.08998 * 109.88029 * 141.61253 * 14 13 11 40 40 H 1.09007 * 109.87747 * 262.61549 * 14 13 11 41 41 H 0.97004 * 119.99590 * 179.97438 * 19 18 16 42 42 H 1.08993 * 110.29423 * 216.94410 * 24 15 14 43 43 H 1.09001 * 110.52394 * 94.67392 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5762 0.1249 5 6 3.3884 1.2767 -0.1103 6 6 4.1250 -0.0109 -0.3762 7 6 5.0037 0.1544 -1.5893 8 8 5.0289 1.2134 -2.1800 9 7 5.7607 -0.8748 -2.0184 10 6 6.6145 -0.7143 -3.1980 11 6 7.3614 -2.0219 -3.4687 12 1 7.8612 -2.3776 -2.5678 13 6 8.3705 -1.8547 -4.6354 14 6 8.4888 -3.2868 -5.1979 15 7 7.2787 -4.0186 -4.7959 16 6 7.0081 -5.3306 -5.0800 17 1 6.0864 -5.7780 -4.7385 18 6 7.9184 -6.0854 -5.8068 19 7 9.0420 -5.5402 -6.2225 20 14 7.5490 -7.8749 -6.1949 21 1 6.2307 -8.2441 -5.6197 22 1 7.5171 -8.0657 -7.6673 23 1 8.6053 -8.7372 -5.6068 24 6 6.4051 -3.1002 -4.0367 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8688 -0.9353 0.0004 28 1 1.0504 2.9393 -0.8679 29 1 0.4092 2.4196 0.7091 30 1 1.9472 3.3115 0.6238 31 1 3.9369 2.2016 -0.0091 32 1 3.4061 -0.8105 -0.5545 33 1 4.7411 -0.2620 0.4872 34 1 5.7402 -1.7218 -1.5462 35 1 7.3335 0.0852 -3.0200 36 1 5.9980 -0.4630 -4.0611 37 1 9.3341 -1.5050 -4.2647 38 1 7.9800 -1.1742 -5.3921 39 1 8.5579 -3.2535 -6.2852 40 1 9.3717 -3.7753 -4.7854 41 1 9.6783 -6.0678 -6.7302 42 1 5.9102 -3.6337 -3.2253 43 1 5.6666 -2.6433 -4.6954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493228115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:12 Heat of formation + Delta-G solvation = 11.573473 kcal Electronic energy + Delta-G solvation = -20956.679538 eV Core-core repulsion = 17809.970243 eV Total energy + Delta-G solvation = -3146.709295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.76889 -37.75044 -37.02158 -34.61906 -32.60732 -32.12642 -30.37827 -29.62129 -28.26197 -26.10366 -25.06389 -23.36610 -22.03975 -20.67784 -19.99418 -19.66279 -17.83739 -17.15939 -16.66587 -16.28271 -15.88852 -15.30777 -14.72819 -14.51149 -14.49520 -13.83044 -13.63482 -13.26069 -13.20500 -12.77291 -12.55859 -12.38171 -12.26683 -11.97233 -11.83552 -11.66606 -11.38864 -10.90639 -10.87881 -10.82103 -10.66496 -10.39834 -10.14212 -10.00571 -9.89272 -9.71536 -9.65761 -8.94770 -8.61432 -8.42963 -6.84348 -5.72378 -3.05922 1.12880 2.68131 2.77173 3.35994 3.38596 3.43913 3.46569 4.44043 4.48007 4.63915 4.74074 4.90591 5.07919 5.16175 5.23663 5.24845 5.30524 5.41101 5.42243 5.46994 5.54386 5.54683 5.68513 5.79219 5.89620 6.04537 6.06288 6.15632 6.22128 6.34407 6.45217 6.49230 6.50215 6.53307 6.68751 6.72141 6.90505 7.55032 7.56903 7.62558 7.82135 8.24777 8.27483 9.20966 9.81150 10.47774 11.39432 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.002993 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.055958 B = 9353.126870 C =10298.699567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.121 4.121 7 C 0.514 3.486 8 O -0.544 6.544 9 N -0.726 5.726 10 C 0.132 3.868 11 C -0.117 4.117 12 H 0.079 0.921 13 C -0.135 4.135 14 C 0.176 3.824 15 N -0.607 5.607 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.142 3.858 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.402 0.598 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.035 0.965 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 12.396 14.060 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.144 4.144 3 C -0.112 4.112 4 C -0.171 4.171 5 C -0.134 4.134 6 C -0.160 4.160 7 C 0.300 3.700 8 O -0.421 6.421 9 N -0.378 5.378 10 C 0.009 3.991 11 C -0.137 4.137 12 H 0.098 0.902 13 C -0.174 4.174 14 C 0.052 3.948 15 N -0.333 5.333 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.015 3.985 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.236 0.764 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -11.060 12.972 13.497 21.743 hybrid contribution -0.058 -1.478 -0.102 1.482 sum -11.118 11.494 13.395 20.860 Atomic orbital electron populations 1.24428 0.95759 1.02042 0.99854 1.21993 0.95410 0.96369 1.00582 1.20565 0.93875 0.94364 1.02442 1.20776 0.99966 0.94171 1.02162 1.22792 0.94018 0.97783 0.98821 1.20854 0.99243 0.98719 0.97198 1.20493 0.80058 0.83853 0.85574 1.90695 1.66139 1.27192 1.58062 1.46109 1.44983 1.15317 1.31355 1.21393 0.92811 0.97711 0.87233 1.22605 0.97664 0.94109 0.99300 0.90231 1.22855 0.97510 1.00579 0.96447 1.21145 0.90005 0.85658 0.98018 1.44564 1.18152 1.07818 1.62810 1.19097 1.02872 0.84768 1.28842 0.90441 1.24815 0.96747 0.98478 1.00541 1.69983 1.09825 1.35049 1.42099 0.86040 0.77363 0.84562 0.77775 1.20519 1.21749 1.21757 1.21633 0.92510 0.90403 0.93905 0.88145 0.88117 0.86420 0.91274 0.91848 0.91665 0.86249 0.87933 0.87940 0.76417 0.91729 0.91425 0.92002 0.92210 0.93948 0.93544 0.93804 0.94641 0.96286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.07 28.88 0.41 -1.02 16 2 C -0.13 -1.10 9.20 -37.83 -0.35 -1.45 16 3 C -0.11 -1.07 5.98 -102.87 -0.61 -1.68 16 4 C -0.11 -0.90 9.38 36.01 0.34 -0.56 16 5 C -0.12 -1.18 8.43 -36.15 -0.30 -1.48 16 6 C -0.12 -1.12 5.93 -29.03 -0.17 -1.30 16 7 C 0.51 6.70 7.82 -10.99 -0.09 6.61 16 8 O -0.54 -9.25 16.03 5.55 0.09 -9.16 16 9 N -0.73 -8.96 5.50 -60.30 -0.33 -9.29 16 10 C 0.13 1.91 5.14 -4.04 -0.02 1.88 16 11 C -0.12 -1.92 3.05 -88.47 -0.27 -2.19 16 12 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.13 -2.46 6.42 -24.90 -0.16 -2.62 16 14 C 0.18 4.26 5.37 -3.07 -0.02 4.25 16 15 N -0.61 -15.40 3.41 -169.81 -0.58 -15.98 16 16 C -0.23 -6.32 10.29 -15.06 -0.15 -6.48 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.14 10.31 55.49 0.57 -26.57 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.14 2.82 6.67 -2.35 -0.02 2.81 16 25 H 0.10 0.70 6.31 -52.49 -0.33 0.37 16 26 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 27 H 0.12 0.91 6.00 -52.48 -0.31 0.60 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.42 6.67 -51.93 -0.35 0.08 16 30 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 31 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 32 H 0.10 0.83 5.41 -51.93 -0.28 0.55 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 4.09 8.47 -40.82 -0.35 3.75 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 39 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 40 H 0.05 1.24 7.37 -51.92 -0.38 0.85 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.40 7.90 -51.93 -0.41 -0.02 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -32.85 350.14 -8.49 -41.34 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.98 Total: 0.96 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.51 Total: -3.60 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.34 Total: -51.84 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.85 -8.49 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.915 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds