Wall clock time and date at job start Tue Mar 31 2020 00:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47114 * 120.00093 * 2 1 4 4 C 1.50703 * 119.99923 * 5.49069 * 3 2 1 5 5 C 1.32873 * 120.00230 * 185.49811 * 3 2 1 6 6 C 1.50707 * 119.99816 * 6.24392 * 5 3 2 7 7 C 1.50701 * 109.46879 * 126.12980 * 6 5 3 8 8 O 1.21284 * 119.99854 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99662 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99921 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47228 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.88687 * 308.87800 * 11 10 9 13 13 C 1.55158 * 111.00619 * 184.99928 * 11 10 9 14 14 C 1.54323 * 102.94142 * 206.42492 * 13 11 10 15 15 N 1.47018 * 107.40346 * 22.11331 * 14 13 11 16 16 C 1.36941 * 125.64623 * 181.10883 * 15 14 13 17 17 H 1.08000 * 120.00050 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00190 * 0.02562 * 16 15 14 19 19 N 1.31624 * 119.99682 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00258 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46961 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46987 * 120.00348 * 20 18 16 23 23 H 1.48500 * 109.47027 * 240.00066 * 20 18 16 24 24 C 1.47745 * 108.53251 * 1.18011 * 15 14 13 25 25 H 1.07997 * 120.00011 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99781 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.00299 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47405 * 270.00182 * 4 3 2 29 29 H 1.08995 * 109.47194 * 30.00624 * 4 3 2 30 30 H 1.09001 * 109.46922 * 150.00647 * 4 3 2 31 31 H 1.08000 * 120.00021 * 186.25216 * 5 3 2 32 32 H 1.08995 * 109.46749 * 6.12580 * 6 5 3 33 33 H 1.09002 * 109.46547 * 246.12780 * 6 5 3 34 34 H 0.97000 * 120.00049 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47376 * 59.99592 * 10 9 7 36 36 H 1.09000 * 109.46607 * 299.99656 * 10 9 7 37 37 H 1.09001 * 110.71850 * 88.05568 * 13 11 10 38 38 H 1.09004 * 110.87088 * 324.85663 * 13 11 10 39 39 H 1.08998 * 109.88029 * 141.61253 * 14 13 11 40 40 H 1.09007 * 109.87747 * 262.61549 * 14 13 11 41 41 H 0.97004 * 119.99590 * 179.97438 * 19 18 16 42 42 H 1.08993 * 110.29423 * 216.94410 * 24 15 14 43 43 H 1.09001 * 110.52394 * 94.67392 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5762 0.1249 5 6 3.3884 1.2767 -0.1103 6 6 4.1250 -0.0109 -0.3762 7 6 5.0037 0.1544 -1.5893 8 8 5.0289 1.2134 -2.1800 9 7 5.7607 -0.8748 -2.0184 10 6 6.6145 -0.7143 -3.1980 11 6 7.3614 -2.0219 -3.4687 12 1 7.8612 -2.3776 -2.5678 13 6 8.3705 -1.8547 -4.6354 14 6 8.4888 -3.2868 -5.1979 15 7 7.2787 -4.0186 -4.7959 16 6 7.0081 -5.3306 -5.0800 17 1 6.0864 -5.7780 -4.7385 18 6 7.9184 -6.0854 -5.8068 19 7 9.0420 -5.5402 -6.2225 20 14 7.5490 -7.8749 -6.1949 21 1 6.2307 -8.2441 -5.6197 22 1 7.5171 -8.0657 -7.6673 23 1 8.6053 -8.7372 -5.6068 24 6 6.4051 -3.1002 -4.0367 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8688 -0.9353 0.0004 28 1 1.0504 2.9393 -0.8679 29 1 0.4092 2.4196 0.7091 30 1 1.9472 3.3115 0.6238 31 1 3.9369 2.2016 -0.0091 32 1 3.4061 -0.8105 -0.5545 33 1 4.7411 -0.2620 0.4872 34 1 5.7402 -1.7218 -1.5462 35 1 7.3335 0.0852 -3.0200 36 1 5.9980 -0.4630 -4.0611 37 1 9.3341 -1.5050 -4.2647 38 1 7.9800 -1.1742 -5.3921 39 1 8.5579 -3.2535 -6.2852 40 1 9.3717 -3.7753 -4.7854 41 1 9.6783 -6.0678 -6.7302 42 1 5.9102 -3.6337 -3.2253 43 1 5.6666 -2.6433 -4.6954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493228115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:11 Heat of formation + Delta-G solvation = -8.917744 kcal Electronic energy + Delta-G solvation = -20957.568104 eV Core-core repulsion = 17809.970243 eV Total energy + Delta-G solvation = -3147.597860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82966 -39.27681 -37.79748 -35.99328 -34.31242 -32.95296 -31.66946 -30.83890 -29.77709 -27.45650 -26.40736 -24.81050 -22.73014 -22.08788 -21.54335 -21.01049 -18.88842 -18.50457 -17.91627 -17.37087 -16.80376 -16.69102 -16.35075 -15.74897 -15.57016 -15.30619 -14.69642 -14.47611 -14.16841 -13.99243 -13.82512 -13.52021 -13.40140 -13.22916 -13.04988 -12.89675 -12.74097 -12.65424 -12.41733 -11.97761 -11.88871 -11.84716 -11.55077 -11.49949 -11.46465 -11.30761 -10.86193 -10.71510 -10.04501 -9.10468 -8.90010 -7.85049 -5.20616 0.46127 1.46117 1.47195 1.57478 1.69371 2.05793 2.42147 2.49478 3.33460 3.61589 3.76291 3.78289 3.93650 4.02256 4.03645 4.06499 4.25940 4.45509 4.47056 4.61535 4.62660 4.69848 4.71336 4.80857 4.81967 4.84554 4.93130 4.95790 5.06565 5.08113 5.17026 5.36833 5.45946 5.51194 5.51585 5.60308 5.67563 5.78246 5.84326 6.06299 6.20066 6.61141 7.10360 7.30015 7.77803 8.42808 9.25757 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.002993 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.055958 B = 9353.126870 C =10298.699567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.147 4.147 3 C -0.113 4.113 4 C -0.117 4.117 5 C -0.138 4.138 6 C -0.111 4.111 7 C 0.513 3.487 8 O -0.588 6.588 9 N -0.719 5.719 10 C 0.144 3.856 11 C -0.094 4.094 12 H 0.092 0.908 13 C -0.124 4.124 14 C 0.182 3.818 15 N -0.630 5.630 16 C -0.239 4.239 17 H 0.085 0.915 18 C -0.070 4.070 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.137 3.863 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.415 0.585 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.002 0.998 40 H 0.013 0.987 41 H 0.246 0.754 42 H 0.051 0.949 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.747 12.320 15.859 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.113 4.113 4 C -0.174 4.174 5 C -0.156 4.156 6 C -0.150 4.150 7 C 0.301 3.699 8 O -0.468 6.468 9 N -0.371 5.371 10 C 0.020 3.980 11 C -0.113 4.113 12 H 0.110 0.890 13 C -0.162 4.162 14 C 0.057 3.943 15 N -0.356 5.356 16 C -0.368 4.368 17 H 0.102 0.898 18 C -0.263 4.263 19 N -0.603 5.603 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.222 1.222 23 H -0.218 1.218 24 C 0.013 3.987 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.145 0.855 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.251 0.749 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.020 0.980 40 H 0.031 0.969 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -12.653 12.891 15.338 23.696 hybrid contribution 0.334 -1.423 -0.660 1.604 sum -12.319 11.468 14.677 22.331 Atomic orbital electron populations 1.24660 0.95593 1.03019 0.97953 1.22139 0.95944 0.96392 1.02010 1.20829 0.93907 0.95323 1.01222 1.20833 1.00526 0.93767 1.02265 1.22813 0.94424 0.97904 1.00507 1.20852 0.99096 0.98814 0.96195 1.21136 0.79766 0.82985 0.86029 1.90678 1.67566 1.28936 1.59628 1.46007 1.44428 1.15979 1.30651 1.21113 0.92828 0.96368 0.87733 1.22405 0.96266 0.93929 0.98730 0.88962 1.22723 0.99593 0.96652 0.97276 1.20914 0.88814 0.88853 0.95700 1.44901 1.19325 1.07965 1.63451 1.19517 1.02930 0.86166 1.28228 0.89767 1.25685 0.96849 1.02708 1.01041 1.70210 1.10747 1.36315 1.43004 0.84996 0.77719 0.79541 0.77006 1.18748 1.22211 1.21841 1.21820 0.92555 0.90605 0.93761 0.87574 0.86833 0.85503 0.91584 0.90554 0.91246 0.87315 0.86349 0.85264 0.74878 0.91024 0.92767 0.89622 0.91279 0.97990 0.96855 0.94480 0.93080 0.96552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 14.07 66.64 0.94 -1.35 16 2 C -0.15 -2.26 9.20 23.43 0.22 -2.04 16 3 C -0.11 -1.97 5.98 -18.71 -0.11 -2.09 16 4 C -0.12 -1.71 9.38 71.24 0.67 -1.04 16 5 C -0.14 -2.63 8.43 24.51 0.21 -2.42 16 6 C -0.11 -1.80 5.93 29.10 0.17 -1.63 16 7 C 0.51 12.40 7.82 87.66 0.69 13.09 16 8 O -0.59 -19.53 16.03 -3.04 -0.05 -19.58 16 9 N -0.72 -15.91 5.50 -463.07 -2.55 -18.46 16 10 C 0.14 3.84 5.14 86.38 0.44 4.28 16 11 C -0.09 -2.88 3.05 -9.40 -0.03 -2.91 16 12 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 13 C -0.12 -4.37 6.42 31.78 0.20 -4.17 16 14 C 0.18 9.01 5.37 86.73 0.47 9.47 16 15 N -0.63 -32.07 3.41 -691.17 -2.35 -34.42 16 16 C -0.24 -13.35 10.29 84.03 0.86 -12.48 16 17 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 18 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 19 N -0.95 -57.87 10.31 21.65 0.22 -57.65 16 20 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 C 0.14 5.28 6.67 86.79 0.58 5.86 16 25 H 0.11 1.23 6.31 -2.91 -0.02 1.21 16 26 H 0.11 1.17 8.06 -2.91 -0.02 1.15 16 27 H 0.13 1.63 6.00 -2.91 -0.02 1.61 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.88 6.67 -2.39 -0.02 0.86 16 30 H 0.07 0.93 8.06 -2.39 -0.02 0.91 16 31 H 0.11 2.25 8.04 -2.91 -0.02 2.23 16 32 H 0.12 1.56 5.41 -2.39 -0.01 1.55 16 33 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.41 7.09 8.47 -92.71 -0.79 6.31 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 39 H 0.00 0.10 7.51 -2.39 -0.02 0.09 16 40 H 0.01 0.73 7.37 -2.38 -0.02 0.71 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.02 0.66 7.90 -2.39 -0.02 0.64 16 Total: -1.00 -72.74 350.14 3.27 -69.47 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.20 Total: 13.88 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.77 Total: -0.97 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.68 Total: -110.53 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.05 Total: -19.58 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.74 3.27 -69.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.554 kcal (2) G-P(sol) polarization free energy of solvation -72.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds