Wall clock time and date at job start Tue Mar 31 2020 00:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47127 * 120.00173 * 2 1 4 4 C 1.50701 * 119.99773 * 0.02562 * 3 2 1 5 5 C 1.32861 * 120.00386 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00528 * 186.12719 * 5 3 2 7 7 C 1.50702 * 109.47386 * 125.49401 * 6 5 3 8 8 O 1.21280 * 119.99772 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99809 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99647 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47022 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.64013 * 308.13804 * 11 10 9 13 13 C 1.55165 * 110.72144 * 185.00395 * 11 10 9 14 14 C 1.54906 * 101.58238 * 206.13680 * 13 11 10 15 15 N 1.47423 * 104.83233 * 37.00596 * 14 13 11 16 16 C 1.36946 * 125.64734 * 155.83123 * 15 14 13 17 17 H 1.07998 * 119.99442 * 180.02562 * 16 15 14 18 18 C 1.38802 * 119.99686 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00890 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47420 * 89.99580 * 20 18 16 22 22 H 1.48496 * 109.47075 * 210.00274 * 20 18 16 23 23 H 1.48502 * 109.46885 * 329.99871 * 20 18 16 24 24 C 1.47024 * 108.70458 * 335.87030 * 15 14 13 25 25 H 1.07998 * 119.99891 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99692 * 359.71839 * 1 2 3 27 27 H 1.07993 * 120.00363 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47061 * 93.44652 * 4 3 2 29 29 H 1.08993 * 109.47578 * 213.44532 * 4 3 2 30 30 H 1.09004 * 109.47290 * 333.44961 * 4 3 2 31 31 H 1.08002 * 119.99725 * 6.12927 * 5 3 2 32 32 H 1.08997 * 109.47523 * 245.50067 * 6 5 3 33 33 H 1.09006 * 109.46556 * 5.49340 * 6 5 3 34 34 H 0.96999 * 120.00165 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47465 * 300.00543 * 10 9 7 36 36 H 1.09006 * 109.47353 * 60.00269 * 10 9 7 37 37 H 1.09001 * 110.99916 * 324.20486 * 13 11 10 38 38 H 1.08995 * 111.00682 * 88.01615 * 13 11 10 39 39 H 1.08995 * 110.36977 * 155.84563 * 14 13 11 40 40 H 1.09003 * 110.36594 * 278.06145 * 14 13 11 41 41 H 0.96997 * 120.00964 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.88260 * 241.64254 * 24 15 14 43 43 H 1.09005 * 109.88032 * 120.47788 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3930 1.2742 0.0005 6 6 4.1465 2.5718 0.1398 7 6 5.1117 2.4710 1.2928 8 8 5.1812 1.4462 1.9376 9 7 5.8976 3.5198 1.6073 10 6 6.8354 3.4220 2.7285 11 6 7.5996 4.7398 2.8706 12 1 8.0412 5.0325 1.9180 13 6 8.6895 4.6267 3.9691 14 6 8.8327 6.1024 4.4182 15 7 7.4642 6.6477 4.3645 16 6 7.0031 7.7188 5.0826 17 1 5.9785 8.0419 4.9724 18 6 7.8526 8.3888 5.9521 19 7 9.1013 7.9953 6.0861 20 14 7.2234 9.8493 6.9322 21 1 6.6744 9.3762 8.2283 22 1 8.3404 10.7950 7.1834 23 1 6.1553 10.5379 6.1640 24 6 6.6760 5.8508 3.4130 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0046 27 1 1.8687 -0.9352 -0.0004 28 1 1.1831 2.9245 1.0265 29 1 1.8715 3.3228 -0.5658 30 1 0.3328 2.4344 -0.4584 31 1 3.9330 0.3442 -0.0989 32 1 4.6976 2.7724 -0.7789 33 1 3.4421 3.3827 0.3254 34 1 5.8417 4.3396 1.0918 35 1 6.2840 3.2212 3.6470 36 1 7.5400 2.6112 2.5432 37 1 8.3501 3.9989 4.7930 38 1 9.6249 4.2513 3.5543 39 1 9.2218 6.1534 5.4351 40 1 9.4862 6.6450 3.7351 41 1 9.6951 8.4638 6.6934 42 1 6.3353 6.4828 2.5931 43 1 5.8204 5.4062 3.9214 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493228116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:15 Heat of formation + Delta-G solvation = 11.764435 kcal Electronic energy + Delta-G solvation = -20946.463517 eV Core-core repulsion = 17799.762503 eV Total energy + Delta-G solvation = -3146.701014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.77424 -37.76941 -37.00604 -34.62451 -32.81012 -32.39198 -29.98859 -29.07612 -28.14394 -26.79595 -25.36086 -23.49682 -21.49705 -20.50698 -19.93153 -19.50090 -18.07098 -17.25179 -16.77158 -16.28698 -15.96924 -15.23235 -14.86382 -14.58490 -14.30937 -13.85743 -13.63305 -13.42749 -13.21708 -12.78841 -12.51419 -12.49381 -11.89241 -11.77177 -11.70168 -11.62740 -11.49507 -11.08143 -10.96586 -10.80970 -10.72025 -10.41944 -10.14756 -10.02778 -9.91449 -9.73682 -9.50775 -8.94879 -8.66119 -8.41402 -6.84597 -5.66549 -3.08404 1.12851 2.67632 2.78875 3.36218 3.39194 3.43963 3.45933 4.44386 4.47600 4.64260 4.76959 5.00545 5.06792 5.08611 5.19684 5.23036 5.25753 5.38467 5.41298 5.48703 5.52071 5.62790 5.70507 5.77113 5.88584 6.07040 6.11132 6.15086 6.26689 6.34101 6.45525 6.47595 6.54722 6.58175 6.72069 6.73012 6.90209 7.50185 7.56758 7.61514 7.84671 8.27708 8.35500 9.20989 9.82011 10.46765 11.37428 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.002897 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.766741 B = 9662.365438 C =10439.407764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.112 4.112 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.119 4.119 7 C 0.514 3.486 8 O -0.542 6.542 9 N -0.727 5.727 10 C 0.132 3.868 11 C -0.114 4.114 12 H 0.076 0.924 13 C -0.136 4.136 14 C 0.151 3.849 15 N -0.605 5.605 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.142 3.858 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.401 0.599 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.018 0.982 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.828 -11.869 -14.423 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.131 4.131 3 C -0.112 4.112 4 C -0.181 4.181 5 C -0.134 4.134 6 C -0.159 4.159 7 C 0.300 3.700 8 O -0.420 6.420 9 N -0.378 5.378 10 C 0.009 3.991 11 C -0.133 4.133 12 H 0.094 0.906 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.016 3.984 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.235 0.765 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.695 -12.431 -13.788 21.425 hybrid contribution -0.269 1.157 0.212 1.206 sum -10.964 -11.275 -13.576 20.776 Atomic orbital electron populations 1.24400 0.95713 1.01999 1.00679 1.21859 0.95298 0.96079 0.99888 1.20556 0.93921 0.94389 1.02365 1.20908 1.00187 0.94516 1.02460 1.22767 0.93853 0.97778 0.99016 1.20822 0.98399 0.98548 0.98114 1.20476 0.80899 0.83395 0.85233 1.90701 1.68409 1.29858 1.52994 1.46114 1.40599 1.16561 1.34524 1.21455 0.91087 0.97690 0.88914 1.22443 0.97306 0.93868 0.99726 0.90595 1.23010 0.96354 1.01336 0.96788 1.21929 0.86359 0.86179 1.02866 1.44512 1.07845 1.33772 1.46965 1.19075 0.95726 1.03915 1.16417 0.90543 1.24791 0.95842 0.99862 1.00222 1.69791 1.04689 1.42073 1.40563 0.86070 0.77461 0.81873 0.80078 1.21566 1.21638 1.20754 1.21330 0.93547 0.91250 0.92303 0.88218 0.88050 0.86842 0.91256 0.91267 0.91498 0.86417 0.87921 0.87887 0.76478 0.91311 0.91715 0.91852 0.92133 0.87541 0.97002 0.93709 0.96423 0.95827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 14.11 28.88 0.41 -1.08 16 2 C -0.11 -1.03 9.83 -37.83 -0.37 -1.40 16 3 C -0.11 -1.08 5.98 -102.87 -0.62 -1.70 16 4 C -0.12 -0.98 8.55 36.01 0.31 -0.67 16 5 C -0.12 -1.19 8.45 -36.16 -0.31 -1.49 16 6 C -0.12 -1.10 5.77 -29.04 -0.17 -1.27 16 7 C 0.51 6.74 7.82 -10.98 -0.09 6.65 16 8 O -0.54 -9.37 16.03 5.56 0.09 -9.28 16 9 N -0.73 -9.02 5.47 -60.30 -0.33 -9.35 16 10 C 0.13 1.95 5.02 -4.05 -0.02 1.93 16 11 C -0.11 -1.88 2.96 -88.78 -0.26 -2.14 16 12 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.14 -2.51 6.53 -24.58 -0.16 -2.67 16 14 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 15 N -0.60 -15.42 3.39 -170.08 -0.58 -16.00 16 16 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.33 5.49 -17.44 -0.10 -0.43 16 19 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 C 0.14 2.86 6.75 -3.07 -0.02 2.84 16 25 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 26 H 0.10 0.71 6.09 -52.49 -0.32 0.39 16 27 H 0.11 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.46 6.62 -51.93 -0.34 0.12 16 30 H 0.07 0.46 6.26 -51.93 -0.33 0.13 16 31 H 0.12 1.26 8.05 -52.49 -0.42 0.84 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.81 5.76 -51.93 -0.30 0.51 16 34 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 35 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -32.62 349.33 -8.52 -41.14 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.94 Total: 1.69 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.56 Total: -4.17 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.35 Total: -51.67 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.62 -8.52 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.908 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds