Wall clock time and date at job start Tue Mar 31 2020 00:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47127 * 120.00173 * 2 1 4 4 C 1.50701 * 119.99773 * 0.02562 * 3 2 1 5 5 C 1.32861 * 120.00386 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00528 * 186.12719 * 5 3 2 7 7 C 1.50702 * 109.47386 * 125.49401 * 6 5 3 8 8 O 1.21280 * 119.99772 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99809 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99647 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47022 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.64013 * 308.13804 * 11 10 9 13 13 C 1.55165 * 110.72144 * 185.00395 * 11 10 9 14 14 C 1.54906 * 101.58238 * 206.13680 * 13 11 10 15 15 N 1.47423 * 104.83233 * 37.00596 * 14 13 11 16 16 C 1.36946 * 125.64734 * 155.83123 * 15 14 13 17 17 H 1.07998 * 119.99442 * 180.02562 * 16 15 14 18 18 C 1.38802 * 119.99686 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00890 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47420 * 89.99580 * 20 18 16 22 22 H 1.48496 * 109.47075 * 210.00274 * 20 18 16 23 23 H 1.48502 * 109.46885 * 329.99871 * 20 18 16 24 24 C 1.47024 * 108.70458 * 335.87030 * 15 14 13 25 25 H 1.07998 * 119.99891 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99692 * 359.71839 * 1 2 3 27 27 H 1.07993 * 120.00363 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47061 * 93.44652 * 4 3 2 29 29 H 1.08993 * 109.47578 * 213.44532 * 4 3 2 30 30 H 1.09004 * 109.47290 * 333.44961 * 4 3 2 31 31 H 1.08002 * 119.99725 * 6.12927 * 5 3 2 32 32 H 1.08997 * 109.47523 * 245.50067 * 6 5 3 33 33 H 1.09006 * 109.46556 * 5.49340 * 6 5 3 34 34 H 0.96999 * 120.00165 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47465 * 300.00543 * 10 9 7 36 36 H 1.09006 * 109.47353 * 60.00269 * 10 9 7 37 37 H 1.09001 * 110.99916 * 324.20486 * 13 11 10 38 38 H 1.08995 * 111.00682 * 88.01615 * 13 11 10 39 39 H 1.08995 * 110.36977 * 155.84563 * 14 13 11 40 40 H 1.09003 * 110.36594 * 278.06145 * 14 13 11 41 41 H 0.96997 * 120.00964 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.88260 * 241.64254 * 24 15 14 43 43 H 1.09005 * 109.88032 * 120.47788 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3930 1.2742 0.0005 6 6 4.1465 2.5718 0.1398 7 6 5.1117 2.4710 1.2928 8 8 5.1812 1.4462 1.9376 9 7 5.8976 3.5198 1.6073 10 6 6.8354 3.4220 2.7285 11 6 7.5996 4.7398 2.8706 12 1 8.0412 5.0325 1.9180 13 6 8.6895 4.6267 3.9691 14 6 8.8327 6.1024 4.4182 15 7 7.4642 6.6477 4.3645 16 6 7.0031 7.7188 5.0826 17 1 5.9785 8.0419 4.9724 18 6 7.8526 8.3888 5.9521 19 7 9.1013 7.9953 6.0861 20 14 7.2234 9.8493 6.9322 21 1 6.6744 9.3762 8.2283 22 1 8.3404 10.7950 7.1834 23 1 6.1553 10.5379 6.1640 24 6 6.6760 5.8508 3.4130 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0046 27 1 1.8687 -0.9352 -0.0004 28 1 1.1831 2.9245 1.0265 29 1 1.8715 3.3228 -0.5658 30 1 0.3328 2.4344 -0.4584 31 1 3.9330 0.3442 -0.0989 32 1 4.6976 2.7724 -0.7789 33 1 3.4421 3.3827 0.3254 34 1 5.8417 4.3396 1.0918 35 1 6.2840 3.2212 3.6470 36 1 7.5400 2.6112 2.5432 37 1 8.3501 3.9989 4.7930 38 1 9.6249 4.2513 3.5543 39 1 9.2218 6.1534 5.4351 40 1 9.4862 6.6450 3.7351 41 1 9.6951 8.4638 6.6934 42 1 6.3353 6.4828 2.5931 43 1 5.8204 5.4062 3.9214 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493228116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:14 Heat of formation + Delta-G solvation = -8.497027 kcal Electronic energy + Delta-G solvation = -20947.342120 eV Core-core repulsion = 17799.762503 eV Total energy + Delta-G solvation = -3147.579617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84913 -39.29589 -37.78711 -36.01421 -34.32316 -33.39706 -31.66091 -30.23517 -29.35867 -27.72933 -26.97981 -25.03878 -22.49082 -21.93737 -21.35481 -20.72753 -18.90534 -18.76614 -18.05142 -17.33775 -17.00619 -16.71330 -16.34865 -15.90071 -15.54811 -15.04749 -14.69455 -14.45364 -14.26917 -14.12345 -13.71070 -13.53971 -13.45087 -13.22295 -13.10046 -12.82135 -12.66919 -12.49042 -12.30823 -12.01727 -11.87592 -11.82455 -11.72652 -11.57795 -11.39586 -11.36170 -10.86375 -10.73651 -10.06352 -9.10188 -8.87782 -7.77470 -5.21703 0.44284 1.46466 1.48416 1.56891 1.68469 2.04681 2.41403 2.49719 3.32185 3.64307 3.75696 3.78893 3.92952 3.99902 4.03095 4.09754 4.35873 4.44600 4.47069 4.47796 4.61426 4.66005 4.70960 4.79899 4.84568 4.89700 4.92328 5.01391 5.06772 5.13353 5.14956 5.36255 5.45709 5.49239 5.50578 5.60932 5.66368 5.80414 5.83185 6.05859 6.32189 6.60782 7.11350 7.29768 7.79464 8.42802 9.24490 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.002897 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.766741 B = 9662.365438 C =10439.407764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.143 4.143 3 C -0.112 4.112 4 C -0.126 4.126 5 C -0.139 4.139 6 C -0.108 4.108 7 C 0.512 3.488 8 O -0.589 6.589 9 N -0.718 5.718 10 C 0.143 3.857 11 C -0.092 4.092 12 H 0.099 0.901 13 C -0.124 4.124 14 C 0.151 3.849 15 N -0.629 5.629 16 C -0.239 4.239 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.269 1.269 24 C 0.138 3.862 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.415 0.585 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.070 0.930 40 H -0.008 1.008 41 H 0.247 0.753 42 H 0.031 0.969 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.372 -11.745 -16.100 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.112 4.112 4 C -0.183 4.183 5 C -0.157 4.157 6 C -0.147 4.147 7 C 0.300 3.700 8 O -0.470 6.470 9 N -0.370 5.370 10 C 0.019 3.981 11 C -0.111 4.111 12 H 0.117 0.883 13 C -0.163 4.163 14 C 0.026 3.974 15 N -0.355 5.355 16 C -0.368 4.368 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.194 1.194 24 C 0.013 3.987 25 H 0.132 0.868 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.252 0.748 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.010 0.990 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -12.264 -12.299 -15.509 23.285 hybrid contribution 0.128 1.070 0.719 1.295 sum -12.136 -11.229 -14.790 22.184 Atomic orbital electron populations 1.24643 0.95280 1.03158 0.98180 1.22000 0.96045 0.96125 1.01907 1.20831 0.93989 0.95364 1.01019 1.20977 1.00843 0.93872 1.02568 1.22772 0.94261 0.97869 1.00841 1.20817 0.97854 0.98539 0.97461 1.21169 0.80820 0.82477 0.85538 1.90685 1.69823 1.31674 1.54783 1.45996 1.39949 1.17228 1.33818 1.21155 0.91243 0.96637 0.89049 1.22279 0.95844 0.93354 0.99668 0.88292 1.22854 0.98628 0.97267 0.97548 1.21726 0.85686 0.89493 1.00457 1.44841 1.08940 1.33869 1.47897 1.19457 0.96004 1.04689 1.16628 0.90190 1.25642 0.96195 1.02740 1.01575 1.70052 1.05681 1.43066 1.41152 0.85055 0.76966 0.78636 0.78542 1.21398 1.21988 1.19372 1.21512 0.93640 0.91905 0.91648 0.86848 0.87119 0.87101 0.91652 0.89745 0.90384 0.87864 0.85003 0.86051 0.74780 0.93407 0.90997 0.92185 0.89244 0.91232 0.99029 0.94350 0.95065 0.96313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 14.11 66.64 0.94 -1.46 16 2 C -0.14 -2.47 9.83 23.43 0.23 -2.24 16 3 C -0.11 -2.01 5.98 -18.71 -0.11 -2.12 16 4 C -0.13 -1.69 8.55 71.24 0.61 -1.09 16 5 C -0.14 -2.71 8.45 24.51 0.21 -2.50 16 6 C -0.11 -1.72 5.77 29.10 0.17 -1.56 16 7 C 0.51 12.57 7.82 87.66 0.69 13.25 16 8 O -0.59 -20.13 16.03 -3.03 -0.05 -20.17 16 9 N -0.72 -16.08 5.47 -463.07 -2.53 -18.61 16 10 C 0.14 3.96 5.02 86.38 0.43 4.39 16 11 C -0.09 -2.83 2.96 -9.60 -0.03 -2.86 16 12 H 0.10 2.65 8.14 -2.39 -0.02 2.64 16 13 C -0.12 -4.45 6.53 31.99 0.21 -4.24 16 14 C 0.15 7.40 5.89 86.85 0.51 7.91 16 15 N -0.63 -32.20 3.39 -692.01 -2.35 -34.55 16 16 C -0.24 -13.40 10.27 84.03 0.86 -12.54 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 18 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 19 N -0.95 -56.83 10.09 21.65 0.22 -56.61 16 20 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.14 5.39 6.75 86.73 0.59 5.97 16 25 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 26 H 0.11 1.28 6.09 -2.91 -0.02 1.27 16 27 H 0.11 1.89 8.06 -2.91 -0.02 1.86 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.86 6.62 -2.39 -0.02 0.84 16 30 H 0.08 0.86 6.26 -2.38 -0.01 0.84 16 31 H 0.10 2.25 8.05 -2.91 -0.02 2.23 16 32 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.12 1.51 5.76 -2.38 -0.01 1.50 16 34 H 0.42 6.97 8.47 -92.71 -0.79 6.18 16 35 H 0.05 1.55 7.93 -2.39 -0.02 1.53 16 36 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 38 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.07 3.93 5.87 -2.39 -0.01 3.91 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.02 0.76 7.68 -2.38 -0.02 0.74 16 Total: -1.00 -72.47 349.33 3.29 -69.18 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.20 Total: 15.61 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.77 Total: -2.56 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -4.66 Total: -109.77 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.47 3.29 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.683 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds