Wall clock time and date at job start Tue Mar 31 2020 00:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32861 * 1 3 3 C 1.47114 * 120.00364 * 2 1 4 4 C 1.50710 * 119.99929 * 0.02562 * 3 2 1 5 5 C 1.32868 * 120.00546 * 179.97438 * 3 2 1 6 6 C 1.50700 * 120.00449 * 186.12967 * 5 3 2 7 7 C 1.50697 * 109.47539 * 125.96321 * 6 5 3 8 8 O 1.21281 * 119.99786 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00215 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99866 * 180.27514 * 9 7 6 11 11 C 1.52994 * 109.47237 * 179.72521 * 10 9 7 12 12 H 1.09004 * 110.64014 * 56.69077 * 11 10 9 13 13 C 1.55163 * 110.72367 * 180.02562 * 11 10 9 14 14 C 1.54914 * 101.57946 * 153.86589 * 13 11 10 15 15 N 1.47422 * 104.83308 * 322.99289 * 14 13 11 16 16 C 1.36939 * 125.64744 * 204.16453 * 15 14 13 17 17 H 1.08001 * 119.99996 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00002 * 359.96207 * 16 15 14 19 19 N 1.31619 * 119.99675 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99952 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47265 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47217 * 119.99890 * 20 18 16 23 23 H 1.48507 * 109.46609 * 239.99402 * 20 18 16 24 24 C 1.47022 * 108.70435 * 24.12886 * 15 14 13 25 25 H 1.08006 * 120.00216 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00000 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.00000 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47186 * 213.43552 * 4 3 2 29 29 H 1.09004 * 109.46546 * 333.43282 * 4 3 2 30 30 H 1.08996 * 109.47027 * 93.42769 * 4 3 2 31 31 H 1.08003 * 119.99675 * 6.13232 * 5 3 2 32 32 H 1.08998 * 109.47073 * 5.96032 * 6 5 3 33 33 H 1.08999 * 109.47163 * 245.96409 * 6 5 3 34 34 H 0.96995 * 119.99725 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.47396 * 299.72565 * 10 9 7 36 36 H 1.09005 * 109.47223 * 59.72440 * 10 9 7 37 37 H 1.08995 * 111.00593 * 271.94419 * 13 11 10 38 38 H 1.09000 * 111.00284 * 35.79347 * 13 11 10 39 39 H 1.09003 * 110.36139 * 204.15590 * 14 13 11 40 40 H 1.08993 * 110.45917 * 81.88110 * 14 13 11 41 41 H 0.97005 * 119.99901 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.88248 * 239.52321 * 24 15 14 43 43 H 1.09002 * 110.00742 * 118.43031 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3929 1.2740 0.0005 6 6 4.1464 2.5717 0.1399 7 6 5.1198 2.4669 1.2855 8 8 5.1946 1.4395 1.9256 9 7 5.9079 3.5146 1.5982 10 6 6.8583 3.4106 2.7082 11 6 7.6276 4.7259 2.8457 12 1 6.9402 5.5604 2.9845 13 6 8.6448 4.6473 4.0148 14 6 9.7094 5.6813 3.5707 15 7 9.7951 5.5298 2.1068 16 6 10.8739 5.8627 1.3318 17 1 10.8379 5.7122 0.2629 18 6 12.0136 6.3939 1.9199 19 7 12.0571 6.5779 3.2225 20 14 13.4849 6.8486 0.8627 21 1 13.1844 6.5468 -0.5600 22 1 13.7724 8.2979 1.0116 23 1 14.6677 6.0622 1.2960 24 6 8.5309 4.9612 1.6168 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8686 -0.9353 0.0004 28 1 1.8716 3.3228 -0.5657 29 1 0.3329 2.4343 -0.4587 30 1 1.1827 2.9244 1.0265 31 1 3.9330 0.3440 -0.0990 32 1 3.4429 3.3813 0.3337 33 1 4.6910 2.7764 -0.7819 34 1 5.8482 4.3362 1.0861 35 1 6.3170 3.2080 3.6323 36 1 7.5588 2.5988 2.5119 37 1 8.1818 4.9430 4.9561 38 1 9.0769 3.6495 4.0903 39 1 10.6712 5.4575 4.0322 40 1 9.3911 6.6911 3.8296 41 1 12.8534 6.9495 3.6335 42 1 8.7216 4.0151 1.1104 43 1 8.0495 5.6583 0.9309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493228118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:18 Heat of formation + Delta-G solvation = 11.526233 kcal Electronic energy + Delta-G solvation = -20904.709467 eV Core-core repulsion = 17757.998124 eV Total energy + Delta-G solvation = -3146.711343 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.77807 -37.77835 -37.01801 -34.62152 -32.81630 -32.39401 -29.99699 -29.08972 -28.14456 -26.80452 -25.38175 -23.50352 -21.51347 -20.51003 -19.89351 -19.51717 -18.08237 -17.28055 -16.78971 -16.18689 -15.99177 -15.39006 -14.76289 -14.58024 -14.29976 -13.93128 -13.65620 -13.35587 -13.29574 -12.83240 -12.52187 -12.46604 -11.86974 -11.76897 -11.76415 -11.62925 -11.47608 -11.09499 -10.96443 -10.83089 -10.73992 -10.43966 -10.13579 -10.01523 -9.91416 -9.73867 -9.51153 -8.94719 -8.66896 -8.42597 -6.85062 -5.67167 -3.08876 1.11671 2.68053 2.77045 3.36324 3.38459 3.43811 3.46410 4.43173 4.47128 4.62591 4.76806 4.98883 5.05649 5.08077 5.18136 5.22012 5.26500 5.38319 5.41078 5.44955 5.51412 5.59990 5.69271 5.74942 5.88276 6.06958 6.10177 6.14236 6.25489 6.33309 6.45438 6.47133 6.53713 6.57991 6.71460 6.71669 6.89577 7.50085 7.56977 7.61516 7.84270 8.27771 8.34965 9.20498 9.81496 10.46258 11.36875 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038376 B = 0.002663 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.440676 B =10513.274704 C =10868.049717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.113 4.113 6 C -0.120 4.120 7 C 0.514 3.486 8 O -0.543 6.543 9 N -0.726 5.726 10 C 0.132 3.868 11 C -0.114 4.114 12 H 0.076 0.924 13 C -0.135 4.135 14 C 0.151 3.849 15 N -0.605 5.605 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.141 3.859 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.012 0.988 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.410 -7.284 -5.123 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.179 4.179 5 C -0.131 4.131 6 C -0.159 4.159 7 C 0.300 3.700 8 O -0.420 6.420 9 N -0.378 5.378 10 C 0.009 3.991 11 C -0.134 4.134 12 H 0.094 0.906 13 C -0.174 4.174 14 C 0.026 3.974 15 N -0.331 5.331 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.208 4.208 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.015 3.985 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.236 0.764 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.030 0.970 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -20.130 -7.928 -4.640 22.127 hybrid contribution 0.752 0.682 -0.776 1.278 sum -19.378 -7.246 -5.417 21.386 Atomic orbital electron populations 1.24386 0.95701 1.01958 1.00884 1.21862 0.95295 0.96113 0.99741 1.20541 0.93893 0.94364 1.02721 1.20897 1.00203 0.94570 1.02280 1.22799 0.93842 0.97872 0.98618 1.20825 0.98281 0.98432 0.98389 1.20468 0.81066 0.83393 0.85056 1.90700 1.68818 1.29516 1.52962 1.46104 1.39748 1.16575 1.35344 1.21442 0.90739 0.98241 0.88690 1.22444 0.96827 0.95594 0.98511 0.90607 1.23006 0.97166 1.01605 0.95673 1.21936 0.98118 0.93143 0.84159 1.44515 1.11251 1.73901 1.03417 1.19123 0.90991 1.34575 0.90369 0.90482 1.24803 0.98383 1.01524 0.96086 1.69810 1.28270 1.50747 1.08248 0.85993 0.82577 0.77770 0.79123 1.20542 1.21754 1.21714 1.21318 0.87531 0.96087 0.93530 0.88228 0.88098 0.86820 0.91278 0.91514 0.91413 0.86341 0.87998 0.87735 0.76448 0.91759 0.91311 0.92125 0.91836 0.87540 0.96976 0.93763 0.95827 0.96443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 14.11 28.88 0.41 -1.03 16 2 C -0.11 -1.00 9.83 -37.83 -0.37 -1.37 16 3 C -0.12 -1.08 5.98 -102.87 -0.62 -1.70 16 4 C -0.12 -0.90 8.55 36.01 0.31 -0.59 16 5 C -0.11 -1.16 8.45 -36.16 -0.31 -1.47 16 6 C -0.12 -1.11 5.76 -29.04 -0.17 -1.28 16 7 C 0.51 6.76 7.82 -10.99 -0.09 6.67 16 8 O -0.54 -9.37 16.03 5.56 0.09 -9.28 16 9 N -0.73 -9.07 5.40 -60.30 -0.33 -9.39 16 10 C 0.13 1.95 4.99 -4.05 -0.02 1.93 16 11 C -0.11 -1.88 3.02 -88.79 -0.27 -2.15 16 12 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.14 -2.50 6.53 -24.58 -0.16 -2.66 16 14 C 0.15 3.64 5.89 -2.53 -0.01 3.62 16 15 N -0.60 -15.38 3.39 -170.07 -0.58 -15.95 16 16 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 20 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 C 0.14 2.84 6.52 -3.07 -0.02 2.82 16 25 H 0.10 0.61 8.06 -52.48 -0.42 0.19 16 26 H 0.10 0.67 6.09 -52.48 -0.32 0.35 16 27 H 0.11 0.96 8.06 -52.48 -0.42 0.53 16 28 H 0.07 0.43 6.63 -51.93 -0.34 0.09 16 29 H 0.07 0.42 6.26 -51.93 -0.33 0.10 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.12 1.31 8.05 -52.48 -0.42 0.88 16 32 H 0.10 0.75 5.78 -51.93 -0.30 0.45 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 4.11 8.33 -40.82 -0.34 3.77 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 39 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.02 0.49 7.77 -51.93 -0.40 0.08 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -32.55 349.15 -8.53 -41.08 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.95 Total: 1.56 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.56 Total: -3.99 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.34 Total: -51.63 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.55 -8.53 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.602 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds