Wall clock time and date at job start Tue Mar 31 2020 00:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32861 * 1 3 3 C 1.47114 * 120.00364 * 2 1 4 4 C 1.50710 * 119.99929 * 0.02562 * 3 2 1 5 5 C 1.32868 * 120.00546 * 179.97438 * 3 2 1 6 6 C 1.50700 * 120.00449 * 186.12967 * 5 3 2 7 7 C 1.50697 * 109.47539 * 125.96321 * 6 5 3 8 8 O 1.21281 * 119.99786 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00215 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99866 * 180.27514 * 9 7 6 11 11 C 1.52994 * 109.47237 * 179.72521 * 10 9 7 12 12 H 1.09004 * 110.64014 * 56.69077 * 11 10 9 13 13 C 1.55163 * 110.72367 * 180.02562 * 11 10 9 14 14 C 1.54914 * 101.57946 * 153.86589 * 13 11 10 15 15 N 1.47422 * 104.83308 * 322.99289 * 14 13 11 16 16 C 1.36939 * 125.64744 * 204.16453 * 15 14 13 17 17 H 1.08001 * 119.99996 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00002 * 359.96207 * 16 15 14 19 19 N 1.31619 * 119.99675 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99952 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47265 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47217 * 119.99890 * 20 18 16 23 23 H 1.48507 * 109.46609 * 239.99402 * 20 18 16 24 24 C 1.47022 * 108.70435 * 24.12886 * 15 14 13 25 25 H 1.08006 * 120.00216 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00000 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.00000 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47186 * 213.43552 * 4 3 2 29 29 H 1.09004 * 109.46546 * 333.43282 * 4 3 2 30 30 H 1.08996 * 109.47027 * 93.42769 * 4 3 2 31 31 H 1.08003 * 119.99675 * 6.13232 * 5 3 2 32 32 H 1.08998 * 109.47073 * 5.96032 * 6 5 3 33 33 H 1.08999 * 109.47163 * 245.96409 * 6 5 3 34 34 H 0.96995 * 119.99725 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.47396 * 299.72565 * 10 9 7 36 36 H 1.09005 * 109.47223 * 59.72440 * 10 9 7 37 37 H 1.08995 * 111.00593 * 271.94419 * 13 11 10 38 38 H 1.09000 * 111.00284 * 35.79347 * 13 11 10 39 39 H 1.09003 * 110.36139 * 204.15590 * 14 13 11 40 40 H 1.08993 * 110.45917 * 81.88110 * 14 13 11 41 41 H 0.97005 * 119.99901 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.88248 * 239.52321 * 24 15 14 43 43 H 1.09002 * 110.00742 * 118.43031 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3929 1.2740 0.0005 6 6 4.1464 2.5717 0.1399 7 6 5.1198 2.4669 1.2855 8 8 5.1946 1.4395 1.9256 9 7 5.9079 3.5146 1.5982 10 6 6.8583 3.4106 2.7082 11 6 7.6276 4.7259 2.8457 12 1 6.9402 5.5604 2.9845 13 6 8.6448 4.6473 4.0148 14 6 9.7094 5.6813 3.5707 15 7 9.7951 5.5298 2.1068 16 6 10.8739 5.8627 1.3318 17 1 10.8379 5.7122 0.2629 18 6 12.0136 6.3939 1.9199 19 7 12.0571 6.5779 3.2225 20 14 13.4849 6.8486 0.8627 21 1 13.1844 6.5468 -0.5600 22 1 13.7724 8.2979 1.0116 23 1 14.6677 6.0622 1.2960 24 6 8.5309 4.9612 1.6168 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8686 -0.9353 0.0004 28 1 1.8716 3.3228 -0.5657 29 1 0.3329 2.4343 -0.4587 30 1 1.1827 2.9244 1.0265 31 1 3.9330 0.3440 -0.0990 32 1 3.4429 3.3813 0.3337 33 1 4.6910 2.7764 -0.7819 34 1 5.8482 4.3362 1.0861 35 1 6.3170 3.2080 3.6323 36 1 7.5588 2.5988 2.5119 37 1 8.1818 4.9430 4.9561 38 1 9.0769 3.6495 4.0903 39 1 10.6712 5.4575 4.0322 40 1 9.3911 6.6911 3.8296 41 1 12.8534 6.9495 3.6335 42 1 8.7216 4.0151 1.1104 43 1 8.0495 5.6583 0.9309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493228118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:18 Heat of formation + Delta-G solvation = -8.654204 kcal Electronic energy + Delta-G solvation = -20905.584557 eV Core-core repulsion = 17757.998124 eV Total energy + Delta-G solvation = -3147.586433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85485 -39.29746 -37.78527 -36.01451 -34.31797 -33.39746 -31.66546 -30.22927 -29.34566 -27.72296 -26.98981 -25.04649 -22.51050 -21.93344 -21.29892 -20.74965 -18.90961 -18.75906 -18.07785 -17.28181 -16.98657 -16.71062 -16.49248 -15.82281 -15.51642 -15.04589 -14.74304 -14.45949 -14.27319 -14.09604 -13.75620 -13.54941 -13.34283 -13.25685 -13.09669 -12.80827 -12.69815 -12.50744 -12.29037 -11.97970 -11.89693 -11.82199 -11.72450 -11.57592 -11.38712 -11.35728 -10.86654 -10.74564 -10.06377 -9.10075 -8.87867 -7.77769 -5.21786 0.44450 1.46461 1.47408 1.57643 1.68180 2.04805 2.41360 2.49538 3.32039 3.63971 3.75831 3.78948 3.94797 4.00246 4.03335 4.08614 4.35444 4.44473 4.46084 4.48500 4.62568 4.65727 4.71241 4.79843 4.84967 4.91070 4.92500 5.02127 5.06841 5.13361 5.15724 5.37039 5.45732 5.49497 5.50049 5.61337 5.66286 5.80719 5.83125 6.06264 6.32033 6.60406 7.11251 7.29387 7.79305 8.42677 9.24404 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038376 B = 0.002663 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.440676 B =10513.274704 C =10868.049717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.145 4.145 3 C -0.109 4.109 4 C -0.125 4.125 5 C -0.142 4.142 6 C -0.107 4.107 7 C 0.512 3.488 8 O -0.589 6.589 9 N -0.718 5.718 10 C 0.144 3.856 11 C -0.093 4.093 12 H 0.098 0.902 13 C -0.124 4.124 14 C 0.151 3.849 15 N -0.629 5.629 16 C -0.237 4.237 17 H 0.081 0.919 18 C -0.071 4.071 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.137 3.863 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.415 0.585 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.070 0.930 40 H -0.008 1.008 41 H 0.246 0.754 42 H 0.020 0.980 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.681 -6.837 -6.268 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.109 4.109 4 C -0.182 4.182 5 C -0.160 4.160 6 C -0.146 4.146 7 C 0.300 3.700 8 O -0.470 6.470 9 N -0.370 5.370 10 C 0.019 3.981 11 C -0.112 4.112 12 H 0.116 0.884 13 C -0.163 4.163 14 C 0.026 3.974 15 N -0.355 5.355 16 C -0.366 4.366 17 H 0.099 0.901 18 C -0.263 4.263 19 N -0.600 5.600 20 Si 0.809 3.191 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.220 1.220 24 C 0.013 3.987 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.010 0.990 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -22.435 -7.471 -5.820 24.351 hybrid contribution 1.357 0.489 -0.434 1.506 sum -21.078 -6.982 -6.254 23.068 Atomic orbital electron populations 1.24645 0.95172 1.03226 0.97967 1.21991 0.96107 0.96104 1.02075 1.20835 0.93811 0.95498 1.00772 1.20979 1.00745 0.93631 1.02796 1.22754 0.94374 0.97750 1.01156 1.20810 0.97770 0.98678 0.97378 1.21166 0.81044 0.82460 0.85336 1.90683 1.70236 1.31287 1.54749 1.45993 1.38976 1.17227 1.34807 1.21153 0.90701 0.96308 0.89909 1.22282 0.96090 0.97278 0.95541 0.88381 1.22850 0.96137 0.99560 0.97716 1.21730 0.98122 0.93664 0.83856 1.44843 1.12592 1.74063 1.04041 1.19495 0.92060 1.34070 0.90957 0.90143 1.25654 1.01125 1.02170 0.97337 1.70067 1.28588 1.51614 1.09692 0.84979 0.78959 0.76988 0.78221 1.19063 1.21852 1.21985 1.21502 0.86279 0.95673 0.95296 0.86910 0.86884 0.87389 0.89817 0.90367 0.91164 0.88335 0.85449 0.85661 0.74819 0.91014 0.93331 0.89273 0.92152 0.91234 0.99035 0.94374 0.96231 0.94989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 14.11 66.64 0.94 -1.27 16 2 C -0.14 -2.44 9.83 23.42 0.23 -2.21 16 3 C -0.11 -1.89 5.98 -18.71 -0.11 -2.00 16 4 C -0.13 -1.47 8.55 71.24 0.61 -0.86 16 5 C -0.14 -2.81 8.45 24.51 0.21 -2.61 16 6 C -0.11 -1.75 5.76 29.10 0.17 -1.59 16 7 C 0.51 12.70 7.82 87.66 0.69 13.38 16 8 O -0.59 -20.23 16.03 -3.03 -0.05 -20.28 16 9 N -0.72 -16.28 5.40 -463.08 -2.50 -18.78 16 10 C 0.14 3.96 4.99 86.38 0.43 4.40 16 11 C -0.09 -2.85 3.02 -9.61 -0.03 -2.88 16 12 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.12 -4.43 6.53 31.99 0.21 -4.23 16 14 C 0.15 7.39 5.89 86.86 0.51 7.90 16 15 N -0.63 -32.12 3.39 -691.99 -2.35 -34.47 16 16 C -0.24 -13.26 10.27 84.03 0.86 -12.40 16 17 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 18 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 19 N -0.95 -56.83 10.09 21.65 0.22 -56.61 16 20 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 C 0.14 5.34 6.52 86.73 0.57 5.90 16 25 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 26 H 0.11 1.15 6.09 -2.91 -0.02 1.13 16 27 H 0.11 1.86 8.06 -2.91 -0.02 1.83 16 28 H 0.08 0.74 6.63 -2.39 -0.02 0.72 16 29 H 0.08 0.74 6.26 -2.38 -0.01 0.72 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.10 2.28 8.05 -2.91 -0.02 2.26 16 32 H 0.13 1.42 5.78 -2.39 -0.01 1.41 16 33 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.42 7.16 8.33 -92.71 -0.77 6.39 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.56 8.06 -2.38 -0.02 1.54 16 37 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.06 2.20 8.05 -2.39 -0.02 2.18 16 39 H 0.07 3.93 5.87 -2.39 -0.01 3.91 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 42 H 0.02 0.78 7.77 -2.39 -0.02 0.76 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -72.48 349.15 3.31 -69.17 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.22 Total: 15.22 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.75 Total: -2.02 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.63 Total: -109.85 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.48 3.31 -69.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.514 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds