Wall clock time and date at job start Tue Mar 31 2020 00:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32990 * 120.00226 * 2 1 4 4 C 1.47100 * 120.00259 * 171.87352 * 3 2 1 5 5 O 1.21618 * 119.99851 * 352.79542 * 4 3 2 6 6 N 1.34776 * 120.00081 * 172.78597 * 4 3 2 7 7 C 1.46502 * 119.99795 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.52342 * 325.07872 * 7 6 4 9 9 C 1.53048 * 109.49258 * 205.00165 * 7 6 4 10 10 C 1.53047 * 109.53314 * 178.68441 * 9 7 6 11 11 C 1.53185 * 109.31406 * 61.36481 * 10 9 7 12 12 N 1.46928 * 108.77817 * 305.36189 * 11 10 9 13 13 C 1.36934 * 120.63291 * 233.58707 * 12 11 10 14 14 H 1.08004 * 120.00088 * 150.16620 * 13 12 11 15 15 C 1.38806 * 119.99932 * 330.16589 * 13 12 11 16 16 N 1.31622 * 119.99659 * 145.53420 * 15 13 12 17 17 Si 1.86800 * 120.00327 * 325.53548 * 15 13 12 18 18 H 1.48502 * 109.46805 * 270.00158 * 17 15 13 19 19 H 1.48495 * 109.47328 * 149.99704 * 17 15 13 20 20 H 1.48504 * 109.46649 * 29.99962 * 17 15 13 21 21 C 1.46929 * 118.73405 * 53.86227 * 12 11 10 22 22 C 1.50701 * 119.99845 * 180.02562 * 2 1 3 23 23 C 1.53001 * 117.49896 * 0.87507 * 22 2 1 24 24 C 1.52995 * 59.99911 * 252.50811 * 23 22 2 25 25 H 1.09000 * 109.46868 * 89.99879 * 1 2 3 26 26 H 1.09005 * 109.47346 * 209.99898 * 1 2 3 27 27 H 1.09001 * 109.47169 * 329.99920 * 1 2 3 28 28 H 1.08002 * 120.00049 * 351.88200 * 3 2 1 29 29 H 0.96993 * 119.99972 * 0.02562 * 6 4 3 30 30 H 1.08994 * 109.46222 * 58.66779 * 9 7 6 31 31 H 1.08994 * 109.44689 * 298.69463 * 9 7 6 32 32 H 1.09004 * 109.49409 * 301.41073 * 10 9 7 33 33 H 1.09003 * 109.49398 * 181.31702 * 10 9 7 34 34 H 1.08999 * 109.58766 * 185.57690 * 11 10 9 35 35 H 1.09003 * 109.70818 * 65.21892 * 11 10 9 36 36 H 0.97002 * 120.00314 * 354.89738 * 16 15 13 37 37 H 1.09000 * 109.59180 * 65.92840 * 21 12 11 38 38 H 1.09009 * 109.58595 * 186.35535 * 21 12 11 39 39 H 1.08997 * 115.55119 * 146.58436 * 22 2 1 40 40 H 1.08996 * 117.50130 * 0.02562 * 23 22 2 41 41 H 1.09005 * 117.49950 * 145.02066 * 23 22 2 42 42 H 1.09006 * 117.50503 * 252.51006 * 24 23 22 43 43 H 1.09003 * 117.51908 * 107.48426 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6319 1.1581 0.1801 5 8 4.2147 0.1278 0.4591 6 7 4.3237 2.3057 0.0356 7 6 5.7777 2.3119 0.2144 8 1 6.0518 1.6021 0.9949 9 6 6.2369 3.7155 0.6163 10 6 7.7516 3.7153 0.8353 11 6 8.4525 3.3331 -0.4721 12 7 7.9106 2.0508 -0.9419 13 6 8.7451 1.0033 -1.2274 14 1 8.3998 -0.0122 -1.1012 15 6 10.0349 1.2467 -1.6791 16 7 11.0161 0.4402 -1.3339 17 14 10.3780 2.7187 -2.7768 18 1 10.2209 2.3225 -4.1994 19 1 11.7652 3.1956 -2.5460 20 1 9.4205 3.8080 -2.4576 21 6 6.4567 1.9157 -1.1054 22 6 2.2605 -1.3051 -0.0006 23 6 1.4385 -2.5954 -0.0219 24 6 2.1686 -2.1745 1.2550 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6401 2.0824 -0.1321 29 1 3.8589 3.1275 -0.1867 30 1 5.7368 4.0110 1.5386 31 1 5.9846 4.4205 -0.1757 32 1 8.0071 2.9922 1.6099 33 1 8.0746 4.7095 1.1442 34 1 9.5239 3.2349 -0.2972 35 1 8.2739 4.1024 -1.2234 36 1 10.8534 -0.2804 -0.7052 37 1 6.1164 2.5724 -1.9061 38 1 6.2108 0.8819 -1.3485 39 1 3.2064 -1.3016 -0.5421 40 1 0.3527 -2.5003 -0.0359 41 1 1.8435 -3.4411 -0.5777 42 1 3.0540 -2.7432 1.5394 43 1 1.5635 -1.8023 2.0818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494258882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:31 Heat of formation + Delta-G solvation = 24.724235 kcal Electronic energy + Delta-G solvation = -22039.582091 eV Core-core repulsion = 18893.443056 eV Total energy + Delta-G solvation = -3146.139035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.84249 -38.16210 -37.11707 -34.28588 -33.45972 -32.48535 -30.72350 -29.46055 -27.79230 -24.95330 -23.79758 -22.43436 -22.22186 -21.67006 -20.43982 -19.70809 -18.42991 -17.24509 -16.96774 -16.09155 -15.32377 -14.90704 -14.75919 -14.26269 -13.97418 -13.67360 -13.59308 -13.44452 -13.15593 -13.03562 -12.68077 -12.48873 -12.23820 -11.96716 -11.62066 -11.53544 -11.35992 -11.01981 -10.79122 -10.58669 -10.56282 -10.39316 -10.06360 -9.90493 -9.54368 -9.31454 -9.17822 -8.99782 -8.71061 -8.19123 -6.91963 -6.29526 -3.22086 1.32677 3.43756 3.50714 3.53963 3.60113 3.74456 3.95696 4.47284 4.69275 4.70258 4.94412 4.99059 5.06737 5.08780 5.20944 5.27598 5.31433 5.36195 5.44459 5.50994 5.52749 5.59360 5.66215 5.85586 5.92356 6.02947 6.09315 6.11197 6.21767 6.27067 6.33860 6.38725 6.49243 6.54121 6.66512 6.73388 6.83313 6.90315 7.06151 7.84079 8.16359 8.51413 8.57792 9.10393 9.69478 10.29760 11.10051 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.004221 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.197357 B = 6631.209707 C = 7272.680067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.009 4.009 3 C -0.223 4.223 4 C 0.540 3.460 5 O -0.531 6.531 6 N -0.722 5.722 7 C 0.127 3.873 8 H 0.086 0.914 9 C -0.115 4.115 10 C -0.135 4.135 11 C 0.139 3.861 12 N -0.595 5.595 13 C -0.358 4.358 14 H 0.063 0.937 15 C 0.004 3.996 16 N -0.902 5.902 17 Si 1.017 2.983 18 H -0.298 1.298 19 H -0.294 1.294 20 H -0.268 1.268 21 C 0.141 3.859 22 C -0.115 4.115 23 C -0.191 4.191 24 C -0.154 4.154 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.393 0.607 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.267 0.733 37 H 0.018 0.982 38 H 0.061 0.939 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.442 4.023 4.018 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.011 4.011 3 C -0.244 4.244 4 C 0.328 3.672 5 O -0.409 6.409 6 N -0.373 5.373 7 C 0.021 3.979 8 H 0.104 0.896 9 C -0.153 4.153 10 C -0.175 4.175 11 C 0.013 3.987 12 N -0.319 5.319 13 C -0.486 4.486 14 H 0.081 0.919 15 C -0.200 4.200 16 N -0.539 5.539 17 Si 0.846 3.154 18 H -0.226 1.226 19 H -0.221 1.221 20 H -0.195 1.195 21 C 0.014 3.986 22 C -0.132 4.132 23 C -0.228 4.228 24 C -0.191 4.191 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.143 0.857 29 H 0.227 0.773 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.079 0.921 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.793 3.998 3.357 20.470 hybrid contribution -1.419 -0.223 0.653 1.578 sum -21.212 3.776 4.011 21.915 Atomic orbital electron populations 1.20997 0.91338 1.03103 1.02898 1.21771 0.95009 0.93485 0.90798 1.22403 0.93847 0.98452 1.09745 1.18515 0.87467 0.83669 0.77515 1.90798 1.71181 1.31428 1.47521 1.46037 1.08653 1.10668 1.71894 1.21739 0.77639 0.97665 1.00831 0.89551 1.21667 0.97369 0.95902 1.00381 1.22071 0.94098 1.00507 1.00829 1.21450 0.97359 0.87874 0.91989 1.44286 1.00471 1.11420 1.75772 1.20080 0.95601 0.87172 1.45726 0.91908 1.26169 0.91430 1.03076 0.99321 1.70872 1.31502 1.18914 1.32577 0.84636 0.75492 0.77393 0.77846 1.22615 1.22070 1.19458 1.21339 0.85193 0.99557 0.92508 1.21402 1.00509 0.87806 1.03518 1.23134 0.98736 0.98743 1.02206 1.22777 1.02533 1.02606 0.91212 0.90396 0.90856 0.91109 0.85718 0.77348 0.92747 0.92200 0.91859 0.92395 0.91529 0.95133 0.92315 0.96411 0.92069 0.85026 0.88800 0.88671 0.88466 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.51 36.00 0.34 -0.61 16 2 C -0.01 -0.10 5.80 -101.17 -0.59 -0.68 16 3 C -0.22 -2.62 9.62 -37.81 -0.36 -2.99 16 4 C 0.54 8.43 7.62 -12.67 -0.10 8.33 16 5 O -0.53 -10.40 13.09 5.26 0.07 -10.33 16 6 N -0.72 -10.42 5.08 -54.65 -0.28 -10.70 16 7 C 0.13 2.26 2.62 -67.58 -0.18 2.09 16 8 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 9 C -0.11 -1.78 5.35 -26.68 -0.14 -1.92 16 10 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 11 C 0.14 3.04 4.36 -3.71 -0.02 3.02 16 12 N -0.60 -14.76 2.67 -172.05 -0.46 -15.22 16 13 C -0.36 -10.42 9.70 -15.06 -0.15 -10.56 16 14 H 0.06 2.00 8.06 -52.48 -0.42 1.58 16 15 C 0.00 0.11 4.85 -17.43 -0.08 0.03 16 16 N -0.90 -28.23 13.70 55.49 0.76 -27.47 16 17 Si 1.02 25.58 27.03 -169.99 -4.60 20.99 16 18 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.27 -6.14 4.65 56.52 0.26 -5.88 16 21 C 0.14 3.05 6.12 -3.48 -0.02 3.02 16 22 C -0.11 -1.49 4.26 -91.77 -0.39 -1.88 16 23 C -0.19 -1.96 9.79 -26.73 -0.26 -2.22 16 24 C -0.15 -1.83 10.23 -26.74 -0.27 -2.10 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.50 6.34 -51.93 -0.33 0.17 16 27 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.39 4.31 8.59 -40.82 -0.35 3.96 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.57 5.93 -51.93 -0.31 1.27 16 35 H 0.03 0.65 6.52 -51.93 -0.34 0.31 16 36 H 0.27 8.34 8.73 -40.82 -0.36 7.98 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.46 7.93 -51.92 -0.41 1.05 16 39 H 0.13 2.14 6.41 -51.93 -0.33 1.81 16 40 H 0.09 0.78 6.29 -51.93 -0.33 0.45 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -33.22 338.14 -8.94 -42.16 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.15 Total: 4.49 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.38 Total: -9.02 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.02 Total: -53.39 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.60 Total: 20.99 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.22 -8.94 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494258882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.881 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds