Wall clock time and date at job start Tue Mar 31 2020 00:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32990 * 120.00226 * 2 1 4 4 C 1.47100 * 120.00259 * 171.87352 * 3 2 1 5 5 O 1.21618 * 119.99851 * 352.79542 * 4 3 2 6 6 N 1.34776 * 120.00081 * 172.78597 * 4 3 2 7 7 C 1.46502 * 119.99795 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.52342 * 325.07872 * 7 6 4 9 9 C 1.53048 * 109.49258 * 205.00165 * 7 6 4 10 10 C 1.53047 * 109.53314 * 178.68441 * 9 7 6 11 11 C 1.53185 * 109.31406 * 61.36481 * 10 9 7 12 12 N 1.46928 * 108.77817 * 305.36189 * 11 10 9 13 13 C 1.36934 * 120.63291 * 233.58707 * 12 11 10 14 14 H 1.08004 * 120.00088 * 150.16620 * 13 12 11 15 15 C 1.38806 * 119.99932 * 330.16589 * 13 12 11 16 16 N 1.31622 * 119.99659 * 145.53420 * 15 13 12 17 17 Si 1.86800 * 120.00327 * 325.53548 * 15 13 12 18 18 H 1.48502 * 109.46805 * 270.00158 * 17 15 13 19 19 H 1.48495 * 109.47328 * 149.99704 * 17 15 13 20 20 H 1.48504 * 109.46649 * 29.99962 * 17 15 13 21 21 C 1.46929 * 118.73405 * 53.86227 * 12 11 10 22 22 C 1.50701 * 119.99845 * 180.02562 * 2 1 3 23 23 C 1.53001 * 117.49896 * 0.87507 * 22 2 1 24 24 C 1.52995 * 59.99911 * 252.50811 * 23 22 2 25 25 H 1.09000 * 109.46868 * 89.99879 * 1 2 3 26 26 H 1.09005 * 109.47346 * 209.99898 * 1 2 3 27 27 H 1.09001 * 109.47169 * 329.99920 * 1 2 3 28 28 H 1.08002 * 120.00049 * 351.88200 * 3 2 1 29 29 H 0.96993 * 119.99972 * 0.02562 * 6 4 3 30 30 H 1.08994 * 109.46222 * 58.66779 * 9 7 6 31 31 H 1.08994 * 109.44689 * 298.69463 * 9 7 6 32 32 H 1.09004 * 109.49409 * 301.41073 * 10 9 7 33 33 H 1.09003 * 109.49398 * 181.31702 * 10 9 7 34 34 H 1.08999 * 109.58766 * 185.57690 * 11 10 9 35 35 H 1.09003 * 109.70818 * 65.21892 * 11 10 9 36 36 H 0.97002 * 120.00314 * 354.89738 * 16 15 13 37 37 H 1.09000 * 109.59180 * 65.92840 * 21 12 11 38 38 H 1.09009 * 109.58595 * 186.35535 * 21 12 11 39 39 H 1.08997 * 115.55119 * 146.58436 * 22 2 1 40 40 H 1.08996 * 117.50130 * 0.02562 * 23 22 2 41 41 H 1.09005 * 117.49950 * 145.02066 * 23 22 2 42 42 H 1.09006 * 117.50503 * 252.51006 * 24 23 22 43 43 H 1.09003 * 117.51908 * 107.48426 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6319 1.1581 0.1801 5 8 4.2147 0.1278 0.4591 6 7 4.3237 2.3057 0.0356 7 6 5.7777 2.3119 0.2144 8 1 6.0518 1.6021 0.9949 9 6 6.2369 3.7155 0.6163 10 6 7.7516 3.7153 0.8353 11 6 8.4525 3.3331 -0.4721 12 7 7.9106 2.0508 -0.9419 13 6 8.7451 1.0033 -1.2274 14 1 8.3998 -0.0122 -1.1012 15 6 10.0349 1.2467 -1.6791 16 7 11.0161 0.4402 -1.3339 17 14 10.3780 2.7187 -2.7768 18 1 10.2209 2.3225 -4.1994 19 1 11.7652 3.1956 -2.5460 20 1 9.4205 3.8080 -2.4576 21 6 6.4567 1.9157 -1.1054 22 6 2.2605 -1.3051 -0.0006 23 6 1.4385 -2.5954 -0.0219 24 6 2.1686 -2.1745 1.2550 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6401 2.0824 -0.1321 29 1 3.8589 3.1275 -0.1867 30 1 5.7368 4.0110 1.5386 31 1 5.9846 4.4205 -0.1757 32 1 8.0071 2.9922 1.6099 33 1 8.0746 4.7095 1.1442 34 1 9.5239 3.2349 -0.2972 35 1 8.2739 4.1024 -1.2234 36 1 10.8534 -0.2804 -0.7052 37 1 6.1164 2.5724 -1.9061 38 1 6.2108 0.8819 -1.3485 39 1 3.2064 -1.3016 -0.5421 40 1 0.3527 -2.5003 -0.0359 41 1 1.8435 -3.4411 -0.5777 42 1 3.0540 -2.7432 1.5394 43 1 1.5635 -1.8023 2.0818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494258882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:30 Heat of formation + Delta-G solvation = 2.094953 kcal Electronic energy + Delta-G solvation = -22040.563370 eV Core-core repulsion = 18893.443056 eV Total energy + Delta-G solvation = -3147.120314 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08812 -39.47225 -38.41033 -35.93592 -34.46237 -34.20160 -32.60820 -30.89127 -28.68144 -26.91216 -24.94500 -23.68340 -23.50532 -23.21821 -21.68150 -21.34685 -19.55037 -19.30749 -18.04276 -17.35061 -16.77644 -16.24103 -16.19182 -15.74584 -15.59582 -15.46369 -14.86317 -14.52169 -14.43293 -14.06200 -13.93846 -13.89786 -13.62488 -13.39519 -13.13634 -12.68934 -12.54066 -12.48357 -12.21574 -12.05319 -11.77013 -11.71887 -11.64927 -11.38907 -11.32857 -11.17841 -10.53272 -10.51546 -10.16887 -9.73999 -9.03637 -8.61218 -5.52663 0.38303 1.49678 1.56362 1.76719 2.24643 2.34707 2.57714 2.94632 3.01967 3.46795 3.60782 3.80554 3.89303 3.99834 4.03922 4.11603 4.15828 4.23816 4.35062 4.42057 4.47235 4.64518 4.69234 4.72335 4.76666 4.82046 4.92840 4.93622 5.01594 5.05440 5.11223 5.12989 5.19407 5.20985 5.24407 5.42031 5.43620 5.59811 5.67993 5.79119 6.21805 6.72262 6.88503 7.41168 7.56905 8.08487 8.71753 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.004221 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.197357 B = 6631.209707 C = 7272.680067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.000 4.000 3 C -0.234 4.234 4 C 0.528 3.472 5 O -0.584 6.584 6 N -0.707 5.707 7 C 0.141 3.859 8 H 0.042 0.958 9 C -0.104 4.104 10 C -0.130 4.130 11 C 0.131 3.869 12 N -0.612 5.612 13 C -0.357 4.357 14 H 0.007 0.993 15 C -0.047 4.047 16 N -0.935 5.935 17 Si 1.073 2.927 18 H -0.297 1.297 19 H -0.293 1.293 20 H -0.226 1.226 21 C 0.144 3.856 22 C -0.142 4.142 23 C -0.163 4.163 24 C -0.164 4.164 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.167 0.833 29 H 0.416 0.584 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.249 0.751 37 H 0.042 0.958 38 H 0.016 0.984 39 H 0.085 0.915 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.036 7.923 3.741 26.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.002 4.002 3 C -0.255 4.255 4 C 0.319 3.681 5 O -0.466 6.466 6 N -0.359 5.359 7 C 0.034 3.966 8 H 0.060 0.940 9 C -0.142 4.142 10 C -0.169 4.169 11 C 0.006 3.994 12 N -0.338 5.338 13 C -0.486 4.486 14 H 0.025 0.975 15 C -0.245 4.245 16 N -0.574 5.574 17 Si 0.896 3.104 18 H -0.225 1.225 19 H -0.220 1.220 20 H -0.150 1.150 21 C 0.017 3.983 22 C -0.160 4.160 23 C -0.200 4.200 24 C -0.201 4.201 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.184 0.816 29 H 0.254 0.746 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.103 0.897 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.454 7.952 3.092 24.957 hybrid contribution -0.328 -1.624 0.777 1.830 sum -23.782 6.328 3.869 24.912 Atomic orbital electron populations 1.21082 0.87740 1.04666 1.04342 1.22138 0.97225 0.92011 0.88814 1.22495 0.91083 1.00577 1.11327 1.19371 0.89386 0.82963 0.76387 1.90799 1.72620 1.33384 1.49841 1.45797 1.07038 1.11596 1.71495 1.21264 0.79567 0.98735 0.97069 0.93982 1.21627 0.95650 0.93969 1.02928 1.21987 0.95480 1.01922 0.97545 1.21623 0.96578 0.86498 0.94660 1.44338 1.01311 1.11507 1.76605 1.19822 0.96683 0.86546 1.45525 0.97469 1.27509 0.91154 1.05836 0.99967 1.71007 1.32543 1.19918 1.33967 0.83944 0.76314 0.75011 0.75134 1.22465 1.21968 1.14953 1.21362 0.83878 0.97627 0.95396 1.21296 1.00039 0.90581 1.04113 1.23230 1.00063 0.96778 0.99922 1.22794 1.02558 1.02682 0.92079 0.88723 0.89866 0.89010 0.81560 0.74625 0.89567 0.89181 0.94319 0.88230 0.93835 0.92802 0.94228 0.94063 0.96496 0.89692 0.85580 0.88804 0.90618 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.51 71.24 0.68 -0.64 16 2 C 0.00 0.00 5.80 -17.62 -0.10 -0.10 16 3 C -0.23 -5.04 9.62 23.43 0.23 -4.81 16 4 C 0.53 16.68 7.62 86.57 0.66 17.34 16 5 O -0.58 -24.80 13.09 -4.09 -0.05 -24.85 16 6 N -0.71 -19.47 5.08 -445.06 -2.26 -21.73 16 7 C 0.14 4.99 2.62 45.22 0.12 5.11 16 8 H 0.04 1.87 7.58 -2.39 -0.02 1.86 16 9 C -0.10 -2.82 5.35 30.63 0.16 -2.65 16 10 C -0.13 -4.24 6.08 30.67 0.19 -4.05 16 11 C 0.13 5.47 4.36 86.36 0.38 5.85 16 12 N -0.61 -30.98 2.67 -698.25 -1.87 -32.85 16 13 C -0.36 -22.05 9.70 84.03 0.82 -21.24 16 14 H 0.01 0.52 8.06 -2.91 -0.02 0.50 16 15 C -0.05 -2.89 4.85 84.86 0.41 -2.48 16 16 N -0.94 -61.65 13.70 21.65 0.30 -61.36 16 17 Si 1.07 52.01 27.03 68.60 1.85 53.87 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 19 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.23 -9.29 4.65 99.48 0.46 -8.83 16 21 C 0.14 6.34 6.12 86.51 0.53 6.87 16 22 C -0.14 -3.80 4.26 -11.54 -0.05 -3.85 16 23 C -0.16 -3.20 9.79 30.59 0.30 -2.90 16 24 C -0.16 -4.00 10.23 30.59 0.31 -3.69 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 0.76 6.34 -2.38 -0.02 0.75 16 27 H 0.09 0.67 8.07 -2.39 -0.02 0.65 16 28 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.42 7.61 8.59 -92.71 -0.80 6.81 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.04 2.01 5.93 -2.39 -0.01 2.00 16 35 H 0.05 2.04 6.52 -2.39 -0.02 2.02 16 36 H 0.25 16.77 8.73 -92.71 -0.81 15.96 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.02 0.85 7.93 -2.38 -0.02 0.84 16 39 H 0.09 3.09 6.41 -2.39 -0.02 3.07 16 40 H 0.13 1.66 6.29 -2.39 -0.02 1.65 16 41 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -82.12 338.14 2.51 -79.61 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.08 Total: 18.56 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 4.63 Total: -11.25 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -3.83 Total: -115.94 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 1.85 Total: 53.87 kcal Total: -82.12 2.51 -79.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494258882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.704 kcal (2) G-P(sol) polarization free energy of solvation -82.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds