Wall clock time and date at job start Tue Mar 31 2020 00:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32993 * 120.00084 * 2 1 4 4 C 1.47099 * 119.99891 * 359.32532 * 3 2 1 5 5 O 1.21613 * 120.00129 * 353.95473 * 4 3 2 6 6 N 1.34777 * 119.99946 * 173.96047 * 4 3 2 7 7 C 1.46500 * 120.00138 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.51933 * 325.07637 * 7 6 4 9 9 C 1.53033 * 109.49954 * 204.99841 * 7 6 4 10 10 C 1.53043 * 109.53881 * 178.68194 * 9 7 6 11 11 C 1.53191 * 109.31094 * 61.36699 * 10 9 7 12 12 N 1.46924 * 108.77442 * 305.36050 * 11 10 9 13 13 C 1.36929 * 120.63467 * 233.58984 * 12 11 10 14 14 H 1.07994 * 120.00220 * 151.56000 * 13 12 11 15 15 C 1.38816 * 119.99747 * 331.55288 * 13 12 11 16 16 N 1.31621 * 120.00072 * 142.96425 * 15 13 12 17 17 Si 1.86796 * 120.00254 * 322.97133 * 15 13 12 18 18 H 1.48501 * 109.46927 * 269.99362 * 17 15 13 19 19 H 1.48500 * 109.47545 * 149.99348 * 17 15 13 20 20 H 1.48503 * 109.47044 * 29.99540 * 17 15 13 21 21 C 1.46927 * 118.73853 * 53.86445 * 12 11 10 22 22 C 1.50701 * 119.99830 * 180.02562 * 2 1 3 23 23 C 1.53009 * 117.50035 * 15.15350 * 22 2 1 24 24 C 1.53007 * 117.49837 * 306.49308 * 22 2 1 25 25 H 1.08997 * 109.46659 * 62.59146 * 1 2 3 26 26 H 1.08998 * 109.46634 * 182.59478 * 1 2 3 27 27 H 1.08999 * 109.46836 * 302.59279 * 1 2 3 28 28 H 1.07999 * 119.99582 * 179.32993 * 3 2 1 29 29 H 0.96996 * 119.99809 * 359.97438 * 6 4 3 30 30 H 1.09002 * 109.45935 * 58.65694 * 9 7 6 31 31 H 1.09003 * 109.45839 * 298.70596 * 9 7 6 32 32 H 1.08994 * 109.49908 * 301.41016 * 10 9 7 33 33 H 1.09003 * 109.49404 * 181.31497 * 10 9 7 34 34 H 1.08999 * 109.58227 * 185.57669 * 11 10 9 35 35 H 1.08996 * 109.70498 * 65.22038 * 11 10 9 36 36 H 0.97005 * 119.99779 * 354.90515 * 16 15 13 37 37 H 1.09007 * 109.58772 * 65.92002 * 21 12 11 38 38 H 1.08997 * 109.59133 * 186.34694 * 21 12 11 39 39 H 1.09000 * 115.55022 * 160.82706 * 22 2 1 40 40 H 1.08997 * 117.49694 * 359.97438 * 23 22 2 41 41 H 1.08993 * 117.49545 * 145.02246 * 23 22 2 42 42 H 1.09003 * 117.49948 * 214.98071 * 24 22 2 43 43 H 1.08995 * 117.49734 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4367 2.4256 -0.0150 5 8 0.2268 2.4279 -0.1383 6 7 2.1037 3.5903 0.1078 7 6 1.3714 4.8590 0.0923 8 1 0.5245 4.7825 -0.5898 9 6 2.3025 5.9806 -0.3734 10 6 1.5296 7.3007 -0.4214 11 6 1.0248 7.6436 0.9837 12 7 0.2473 6.5075 1.4971 13 6 -1.0281 6.6879 1.9616 14 1 -1.7428 5.8803 1.9046 15 6 -1.4024 7.9088 2.5058 16 7 -2.6124 8.3810 2.2929 17 14 -0.1888 8.8818 3.5400 18 1 -0.3245 8.4866 4.9650 19 1 -0.4707 10.3331 3.3998 20 1 1.1938 8.5993 3.0774 21 6 0.8666 5.1752 1.5084 22 6 2.2606 -1.3051 -0.0006 23 6 1.4793 -2.5718 -0.3559 24 6 1.9147 -2.3210 1.0901 25 1 -0.3632 0.4731 -0.9123 26 1 -0.3632 -1.0266 0.0465 27 1 -0.3633 0.5536 0.8658 28 1 3.2520 1.1517 0.0109 29 1 3.0686 3.5885 0.2064 30 1 2.6839 5.7467 -1.3674 31 1 3.1362 6.0730 0.3227 32 1 0.6814 7.2012 -1.0986 33 1 2.1872 8.0946 -0.7755 34 1 0.3911 8.5292 0.9382 35 1 1.8721 7.8340 1.6423 36 1 -3.2175 7.9133 1.6962 37 1 1.7029 5.1668 2.2076 38 1 0.1286 4.4316 1.8093 39 1 3.3000 -1.2477 -0.3235 40 1 0.4203 -2.4612 -0.5889 41 1 2.0049 -3.3478 -0.9123 42 1 2.7266 -2.9322 1.4843 43 1 1.1426 -2.0451 1.8082 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494258883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:33 Heat of formation + Delta-G solvation = 0.351815 kcal Electronic energy + Delta-G solvation = -21820.937933 eV Core-core repulsion = 18673.742031 eV Total energy + Delta-G solvation = -3147.195902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10486 -39.44840 -38.62143 -36.02540 -34.36720 -34.11274 -32.60912 -30.90372 -28.58126 -26.90578 -25.43181 -23.69410 -23.48778 -23.22785 -21.49803 -21.24504 -19.47692 -19.31169 -17.95311 -17.43588 -16.72829 -16.43684 -16.13849 -15.84614 -15.58143 -15.51382 -15.04472 -14.69646 -14.33463 -14.15706 -13.96993 -13.81309 -13.62074 -13.36909 -12.95865 -12.64197 -12.51505 -12.48466 -12.17957 -12.04117 -11.89420 -11.79024 -11.67098 -11.39378 -11.34916 -11.21269 -10.62662 -10.50851 -10.20903 -9.77857 -9.04244 -8.62159 -5.48569 0.34375 1.50045 1.56455 1.77164 2.19932 2.30932 2.57681 2.92574 3.02487 3.44854 3.61401 3.82333 3.85082 3.95638 4.03956 4.10939 4.12368 4.15348 4.26781 4.35316 4.46315 4.63395 4.69728 4.72242 4.76533 4.82497 4.93663 4.98643 5.02130 5.07383 5.09869 5.12498 5.12805 5.21455 5.25293 5.41470 5.50405 5.53500 5.59606 5.80390 6.21933 6.68439 6.88617 7.36603 7.58578 8.09909 8.71204 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.003723 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.386769 B = 7518.704872 C = 7976.018583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.002 4.002 3 C -0.229 4.229 4 C 0.530 3.470 5 O -0.589 6.589 6 N -0.706 5.706 7 C 0.140 3.860 8 H 0.043 0.957 9 C -0.104 4.104 10 C -0.129 4.129 11 C 0.131 3.869 12 N -0.612 5.612 13 C -0.360 4.360 14 H 0.010 0.990 15 C -0.046 4.046 16 N -0.930 5.930 17 Si 1.072 2.928 18 H -0.297 1.297 19 H -0.293 1.293 20 H -0.231 1.231 21 C 0.144 3.856 22 C -0.139 4.139 23 C -0.170 4.170 24 C -0.163 4.163 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.163 0.837 29 H 0.417 0.583 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.250 0.750 37 H 0.041 0.959 38 H 0.018 0.982 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.315 -17.904 -6.427 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.004 4.004 3 C -0.249 4.249 4 C 0.321 3.679 5 O -0.471 6.471 6 N -0.357 5.357 7 C 0.033 3.967 8 H 0.062 0.938 9 C -0.142 4.142 10 C -0.169 4.169 11 C 0.007 3.993 12 N -0.337 5.337 13 C -0.489 4.489 14 H 0.027 0.973 15 C -0.244 4.244 16 N -0.569 5.569 17 Si 0.896 3.104 18 H -0.224 1.224 19 H -0.219 1.219 20 H -0.155 1.155 21 C 0.017 3.983 22 C -0.157 4.157 23 C -0.207 4.207 24 C -0.199 4.199 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.181 0.819 29 H 0.254 0.746 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.154 0.846 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.623 -16.545 -5.612 25.536 hybrid contribution -1.152 -1.220 -0.718 1.825 sum 17.472 -17.765 -6.330 25.709 Atomic orbital electron populations 1.20967 0.92486 1.01537 1.02289 1.21995 0.95302 0.93981 0.89159 1.22380 1.01409 0.89837 1.11306 1.19265 0.87077 0.85768 0.75781 1.90810 1.16519 1.88206 1.51587 1.45765 1.11418 1.04711 1.73839 1.21290 0.94837 0.83600 0.96976 0.93818 1.21625 0.97418 0.92481 1.02650 1.21980 0.99603 0.98127 0.97182 1.21571 0.94389 0.89441 0.93915 1.44337 1.13307 1.04036 1.72013 1.19794 0.87449 1.00287 1.41416 0.97257 1.27436 1.00303 0.97264 0.99385 1.71012 1.10481 1.37703 1.37721 0.83898 0.76710 0.74166 0.75658 1.22441 1.21913 1.15473 1.21359 0.95368 0.86469 0.95096 1.21337 1.00291 0.86976 1.07046 1.23210 1.01048 0.97875 0.98563 1.23084 1.04161 1.00798 0.91902 0.91834 0.90642 0.92957 0.81940 0.74561 0.89534 0.89207 0.94258 0.88264 0.93825 0.93011 0.94108 0.94114 0.96346 0.84552 0.88640 0.86281 0.86182 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.04 71.24 0.57 -2.52 16 2 C 0.00 -0.05 5.83 -17.61 -0.10 -0.16 16 3 C -0.23 -5.06 9.67 23.43 0.23 -4.83 16 4 C 0.53 16.70 7.68 86.57 0.66 17.37 16 5 O -0.59 -24.77 12.78 -4.07 -0.05 -24.82 16 6 N -0.71 -19.37 5.08 -445.08 -2.26 -21.62 16 7 C 0.14 4.94 2.62 45.21 0.12 5.05 16 8 H 0.04 1.93 7.58 -2.38 -0.02 1.91 16 9 C -0.10 -2.81 5.35 30.62 0.16 -2.64 16 10 C -0.13 -4.22 6.08 30.67 0.19 -4.03 16 11 C 0.13 5.50 4.40 86.36 0.38 5.88 16 12 N -0.61 -30.87 2.70 -698.26 -1.88 -32.75 16 13 C -0.36 -22.18 9.69 84.04 0.81 -21.36 16 14 H 0.01 0.67 8.06 -2.91 -0.02 0.64 16 15 C -0.05 -2.79 4.78 84.86 0.41 -2.39 16 16 N -0.93 -60.93 13.70 21.65 0.30 -60.63 16 17 Si 1.07 51.98 27.07 68.60 1.86 53.84 16 18 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 19 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 20 H -0.23 -9.59 4.85 99.48 0.48 -9.11 16 21 C 0.14 6.30 6.12 86.51 0.53 6.83 16 22 C -0.14 -1.95 6.00 -11.53 -0.07 -2.02 16 23 C -0.17 -2.03 9.79 30.62 0.30 -1.73 16 24 C -0.16 -1.98 10.08 30.62 0.31 -1.68 16 25 H 0.06 1.97 7.19 -2.39 -0.02 1.95 16 26 H 0.07 1.56 5.69 -2.39 -0.01 1.55 16 27 H 0.05 1.70 7.27 -2.39 -0.02 1.68 16 28 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.42 7.61 8.59 -92.71 -0.80 6.82 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.04 2.02 5.92 -2.39 -0.01 2.01 16 35 H 0.05 1.96 6.62 -2.39 -0.02 1.95 16 36 H 0.25 16.72 8.73 -92.70 -0.81 15.91 16 37 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.02 0.92 7.93 -2.39 -0.02 0.91 16 39 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.28 6.22 -2.39 -0.01 1.27 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -79.99 337.68 2.40 -77.59 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.06 Total: 16.63 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 4.50 Total: -8.23 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -3.85 Total: -115.01 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 1.86 Total: 53.84 kcal Total: -79.99 2.40 -77.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494258883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.943 kcal (2) G-P(sol) polarization free energy of solvation -79.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds