Wall clock time and date at job start Mon Mar 30 2020 23:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47115 * 119.99447 * 2 1 4 4 C 1.50692 * 120.00323 * 354.88793 * 3 2 1 5 5 C 1.32871 * 119.99514 * 174.89475 * 3 2 1 6 6 C 1.50701 * 120.00240 * 5.71151 * 5 3 2 7 7 C 1.50707 * 109.47038 * 125.86361 * 6 5 3 8 8 O 1.21280 * 119.99792 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99933 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99928 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47284 * 175.15749 * 10 9 7 12 12 N 1.46506 * 112.84582 * 288.59892 * 11 10 9 13 13 C 1.36934 * 120.00032 * 301.02315 * 12 11 10 14 14 H 1.08002 * 119.99951 * 4.84592 * 13 12 11 15 15 C 1.38809 * 119.99830 * 184.85753 * 13 12 11 16 16 N 1.31620 * 120.00329 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99990 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47188 * 59.99552 * 17 15 13 19 19 H 1.48499 * 109.47299 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47047 * 299.99734 * 17 15 13 21 21 C 1.53778 * 113.61863 * 157.29424 * 11 10 9 22 22 C 1.53783 * 87.08106 * 220.01669 * 21 11 10 23 23 C 1.53783 * 87.08086 * 25.43343 * 22 21 11 24 24 H 1.07992 * 120.00832 * 0.02562 * 1 2 3 25 25 H 1.08010 * 119.99670 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00093 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47046 * 90.00098 * 4 3 2 28 28 H 1.09005 * 109.47662 * 210.00494 * 4 3 2 29 29 H 1.08995 * 109.47570 * 330.00451 * 4 3 2 30 30 H 1.08006 * 119.99684 * 185.71435 * 5 3 2 31 31 H 1.08997 * 109.47406 * 245.86338 * 6 5 3 32 32 H 1.09000 * 109.46959 * 5.86881 * 6 5 3 33 33 H 0.96998 * 119.99735 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.46864 * 295.15006 * 10 9 7 35 35 H 1.08996 * 109.47568 * 55.15526 * 10 9 7 36 36 H 0.97001 * 119.99754 * 121.01949 * 12 11 10 37 37 H 0.96997 * 120.00303 * 180.02562 * 16 15 13 38 38 H 1.09004 * 113.61120 * 334.56340 * 21 11 10 39 39 H 1.08990 * 113.61928 * 105.46865 * 21 11 10 40 40 H 1.08996 * 113.61512 * 270.88244 * 22 21 11 41 41 H 1.08997 * 113.61015 * 139.97548 * 22 21 11 42 42 H 1.09006 * 113.61314 * 220.02038 * 23 22 21 43 43 H 1.08998 * 113.61957 * 89.11575 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3151 2.5765 -0.1163 5 6 3.3889 1.2764 0.1024 6 6 4.1480 -0.0254 0.0889 7 6 5.2058 0.0211 -0.9836 8 8 5.3306 1.0134 -1.6696 9 7 6.0124 -1.0404 -1.1809 10 6 7.0411 -0.9951 -2.2230 11 6 7.8892 -2.2668 -2.1582 12 7 8.7690 -2.3047 -0.9873 13 6 9.6985 -1.3173 -0.7971 14 1 9.7311 -0.4702 -1.4663 15 6 10.5989 -1.4052 0.2557 16 7 10.5590 -2.4374 1.0714 17 14 11.8673 -0.0586 0.5149 18 1 11.1758 1.2358 0.7413 19 1 12.7028 -0.3866 1.6979 20 1 12.7314 0.0457 -0.6884 21 6 8.6037 -2.5989 -3.4788 22 6 8.2608 -4.0723 -3.2027 23 6 7.0797 -3.5583 -2.3626 24 1 -0.5401 0.9352 -0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8687 -0.9353 0.0004 27 1 1.0553 2.9363 0.8793 28 1 1.9433 3.3136 -0.6165 29 1 0.4050 2.4218 -0.6957 30 1 3.9217 2.2113 0.1954 31 1 4.6206 -0.1805 1.0588 32 1 3.4595 -0.8453 -0.1153 33 1 5.9123 -1.8342 -0.6324 34 1 6.5646 -0.9257 -3.2010 35 1 7.6785 -0.1249 -2.0668 36 1 8.6930 -3.0292 -0.3469 37 1 11.1879 -2.4987 1.8073 38 1 8.1055 -2.1922 -4.3590 39 1 9.6730 -2.3889 -3.4616 40 1 9.0179 -4.5947 -2.6180 41 1 7.9564 -4.6238 -4.0922 42 1 6.9189 -4.1227 -1.4440 43 1 6.1650 -3.4139 -2.9374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501989754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:35 Heat of formation + Delta-G solvation = 22.455178 kcal Electronic energy + Delta-G solvation = -21525.670335 eV Core-core repulsion = 18379.432907 eV Total energy + Delta-G solvation = -3146.237428 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.61101 -38.53131 -36.88955 -33.85856 -33.27700 -32.03349 -30.24662 -29.88502 -27.37692 -25.31855 -25.13744 -23.77572 -22.04337 -21.57390 -20.06461 -18.24960 -17.67908 -17.17820 -16.78639 -15.98181 -15.56405 -15.19696 -14.62621 -14.49433 -14.21082 -13.82750 -13.62539 -13.23383 -13.12055 -12.77301 -12.57816 -12.47506 -12.25798 -11.88966 -11.72205 -11.58467 -11.25875 -11.04380 -10.83373 -10.68954 -10.55295 -10.39270 -10.24130 -10.07880 -9.68402 -9.55500 -9.43162 -8.89581 -8.49948 -8.26235 -7.04553 -5.82957 -3.12545 1.28013 2.91778 3.03987 3.42457 3.46862 3.48431 3.73839 4.53682 4.60225 4.78403 4.97021 5.11563 5.17335 5.24363 5.28912 5.37622 5.41377 5.45933 5.49342 5.54635 5.58166 5.63565 5.67903 5.76272 5.94288 6.05586 6.11973 6.19088 6.29835 6.31368 6.35114 6.39360 6.53511 6.65640 6.73754 6.87411 6.91053 6.97989 7.07339 7.69260 7.98510 8.35624 8.66166 9.47120 10.00687 10.35901 11.39028 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.004162 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.718570 B = 6725.900581 C = 7706.301386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.104 4.104 6 C -0.122 4.122 7 C 0.513 3.487 8 O -0.551 6.551 9 N -0.708 5.708 10 C 0.121 3.879 11 C 0.175 3.825 12 N -0.699 5.699 13 C -0.236 4.236 14 H 0.070 0.930 15 C -0.008 4.008 16 N -0.932 5.932 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.154 4.154 22 C -0.129 4.129 23 C -0.145 4.145 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.399 0.601 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.905 0.732 -3.112 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.137 4.137 3 C -0.123 4.123 4 C -0.170 4.170 5 C -0.122 4.122 6 C -0.162 4.162 7 C 0.299 3.701 8 O -0.429 6.429 9 N -0.357 5.357 10 C -0.005 4.005 11 C 0.081 3.919 12 N -0.339 5.339 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.204 4.204 16 N -0.580 5.580 17 Si 0.736 3.264 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.194 4.194 22 C -0.166 4.166 23 C -0.183 4.183 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.135 0.865 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.233 0.767 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.655 1.572 -3.585 17.109 hybrid contribution 0.840 0.066 0.722 1.110 sum -15.815 1.638 -2.863 16.155 Atomic orbital electron populations 1.24362 0.95704 1.01849 1.00961 1.22013 0.95325 0.96475 0.99867 1.20512 0.94019 0.94312 1.03410 1.20749 1.00072 0.94391 1.01754 1.22859 0.93683 0.98031 0.97645 1.20874 0.97407 0.98218 0.99669 1.20387 0.82166 0.83068 0.84519 1.90665 1.71437 1.32146 1.48659 1.45792 1.34566 1.17542 1.37805 1.21812 0.88887 1.00996 0.88818 1.20797 0.90782 0.90725 0.89553 1.42060 1.39235 1.29603 1.23017 1.19069 1.07797 0.99825 1.10026 0.91179 1.24707 0.99459 0.97914 0.98366 1.69641 1.39596 1.30079 1.18665 0.86305 0.81479 0.81454 0.77204 1.21227 1.21716 1.21191 1.23387 1.02087 0.96065 0.97891 1.22633 0.98242 0.96707 0.99040 1.23158 0.97217 0.97799 1.00170 0.88232 0.88295 0.86484 0.91774 0.91551 0.91725 0.86218 0.87787 0.88283 0.76733 0.92945 0.91038 0.77893 0.93446 0.91450 0.90752 0.90031 0.92765 0.91663 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 14.07 28.88 0.41 -1.25 16 2 C -0.12 -1.21 9.31 -37.83 -0.35 -1.56 16 3 C -0.12 -1.39 5.98 -102.88 -0.62 -2.01 16 4 C -0.11 -1.08 9.39 36.00 0.34 -0.74 16 5 C -0.10 -1.33 8.43 -36.16 -0.30 -1.64 16 6 C -0.12 -1.54 5.95 -29.03 -0.17 -1.71 16 7 C 0.51 8.58 7.82 -10.98 -0.09 8.50 16 8 O -0.55 -11.30 16.03 5.56 0.09 -11.21 16 9 N -0.71 -11.60 5.41 -60.29 -0.33 -11.93 16 10 C 0.12 2.22 5.11 -4.04 -0.02 2.19 16 11 C 0.17 3.21 0.88 -131.00 -0.12 3.09 16 12 N -0.70 -16.07 5.22 -46.48 -0.24 -16.31 16 13 C -0.24 -6.24 9.28 -15.06 -0.14 -6.38 16 14 H 0.07 1.86 7.19 -52.49 -0.38 1.48 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 17 Si 0.90 22.23 29.55 -169.99 -5.02 17.21 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.15 -2.66 7.33 -25.92 -0.19 -2.85 16 22 C -0.13 -2.01 7.99 -25.92 -0.21 -2.21 16 23 C -0.15 -2.19 6.78 -25.92 -0.18 -2.36 16 24 H 0.10 0.78 6.30 -52.49 -0.33 0.45 16 25 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 26 H 0.12 1.08 5.82 -52.49 -0.31 0.77 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.06 0.55 6.65 -51.93 -0.35 0.20 16 30 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.10 1.02 5.32 -51.93 -0.28 0.74 16 33 H 0.40 5.84 8.09 -40.82 -0.33 5.51 16 34 H 0.05 0.91 7.94 -51.93 -0.41 0.50 16 35 H 0.07 1.55 7.12 -51.93 -0.37 1.18 16 36 H 0.39 9.47 7.84 -40.82 -0.32 9.15 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 39 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -30.79 353.99 -8.01 -38.80 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -6.83 Total: 13.67 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.73 Total: -9.26 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.16 Total: -54.54 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.79 -8.01 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501989754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.255 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds