Wall clock time and date at job start Mon Mar 30 2020 23:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47115 * 119.99447 * 2 1 4 4 C 1.50692 * 120.00323 * 354.88793 * 3 2 1 5 5 C 1.32871 * 119.99514 * 174.89475 * 3 2 1 6 6 C 1.50701 * 120.00240 * 5.71151 * 5 3 2 7 7 C 1.50707 * 109.47038 * 125.86361 * 6 5 3 8 8 O 1.21280 * 119.99792 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99933 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99928 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47284 * 175.15749 * 10 9 7 12 12 N 1.46506 * 112.84582 * 288.59892 * 11 10 9 13 13 C 1.36934 * 120.00032 * 301.02315 * 12 11 10 14 14 H 1.08002 * 119.99951 * 4.84592 * 13 12 11 15 15 C 1.38809 * 119.99830 * 184.85753 * 13 12 11 16 16 N 1.31620 * 120.00329 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99990 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47188 * 59.99552 * 17 15 13 19 19 H 1.48499 * 109.47299 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47047 * 299.99734 * 17 15 13 21 21 C 1.53778 * 113.61863 * 157.29424 * 11 10 9 22 22 C 1.53783 * 87.08106 * 220.01669 * 21 11 10 23 23 C 1.53783 * 87.08086 * 25.43343 * 22 21 11 24 24 H 1.07992 * 120.00832 * 0.02562 * 1 2 3 25 25 H 1.08010 * 119.99670 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00093 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47046 * 90.00098 * 4 3 2 28 28 H 1.09005 * 109.47662 * 210.00494 * 4 3 2 29 29 H 1.08995 * 109.47570 * 330.00451 * 4 3 2 30 30 H 1.08006 * 119.99684 * 185.71435 * 5 3 2 31 31 H 1.08997 * 109.47406 * 245.86338 * 6 5 3 32 32 H 1.09000 * 109.46959 * 5.86881 * 6 5 3 33 33 H 0.96998 * 119.99735 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.46864 * 295.15006 * 10 9 7 35 35 H 1.08996 * 109.47568 * 55.15526 * 10 9 7 36 36 H 0.97001 * 119.99754 * 121.01949 * 12 11 10 37 37 H 0.96997 * 120.00303 * 180.02562 * 16 15 13 38 38 H 1.09004 * 113.61120 * 334.56340 * 21 11 10 39 39 H 1.08990 * 113.61928 * 105.46865 * 21 11 10 40 40 H 1.08996 * 113.61512 * 270.88244 * 22 21 11 41 41 H 1.08997 * 113.61015 * 139.97548 * 22 21 11 42 42 H 1.09006 * 113.61314 * 220.02038 * 23 22 21 43 43 H 1.08998 * 113.61957 * 89.11575 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3151 2.5765 -0.1163 5 6 3.3889 1.2764 0.1024 6 6 4.1480 -0.0254 0.0889 7 6 5.2058 0.0211 -0.9836 8 8 5.3306 1.0134 -1.6696 9 7 6.0124 -1.0404 -1.1809 10 6 7.0411 -0.9951 -2.2230 11 6 7.8892 -2.2668 -2.1582 12 7 8.7690 -2.3047 -0.9873 13 6 9.6985 -1.3173 -0.7971 14 1 9.7311 -0.4702 -1.4663 15 6 10.5989 -1.4052 0.2557 16 7 10.5590 -2.4374 1.0714 17 14 11.8673 -0.0586 0.5149 18 1 11.1758 1.2358 0.7413 19 1 12.7028 -0.3866 1.6979 20 1 12.7314 0.0457 -0.6884 21 6 8.6037 -2.5989 -3.4788 22 6 8.2608 -4.0723 -3.2027 23 6 7.0797 -3.5583 -2.3626 24 1 -0.5401 0.9352 -0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8687 -0.9353 0.0004 27 1 1.0553 2.9363 0.8793 28 1 1.9433 3.3136 -0.6165 29 1 0.4050 2.4218 -0.6957 30 1 3.9217 2.2113 0.1954 31 1 4.6206 -0.1805 1.0588 32 1 3.4595 -0.8453 -0.1153 33 1 5.9123 -1.8342 -0.6324 34 1 6.5646 -0.9257 -3.2010 35 1 7.6785 -0.1249 -2.0668 36 1 8.6930 -3.0292 -0.3469 37 1 11.1879 -2.4987 1.8073 38 1 8.1055 -2.1922 -4.3590 39 1 9.6730 -2.3889 -3.4616 40 1 9.0179 -4.5947 -2.6180 41 1 7.9564 -4.6238 -4.0922 42 1 6.9189 -4.1227 -1.4440 43 1 6.1650 -3.4139 -2.9374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501989754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:34 Heat of formation + Delta-G solvation = 3.095162 kcal Electronic energy + Delta-G solvation = -21526.509848 eV Core-core repulsion = 18379.432907 eV Total energy + Delta-G solvation = -3147.076942 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98963 -39.90436 -37.79268 -35.29862 -35.19806 -32.94457 -31.94963 -30.93575 -28.74112 -26.69887 -26.31545 -25.53485 -23.17618 -22.64612 -21.38845 -19.72749 -19.16907 -18.51383 -18.05230 -17.16079 -16.78973 -16.64229 -16.04502 -15.82394 -15.65618 -15.16781 -15.03443 -14.74273 -14.24277 -14.05680 -13.79345 -13.44013 -13.23214 -13.11457 -13.00605 -12.93656 -12.84464 -12.64680 -12.42859 -12.18228 -11.99052 -11.57906 -11.49514 -11.42268 -11.33428 -11.02586 -10.86873 -10.70123 -9.94103 -9.11695 -8.98126 -7.95072 -5.21536 0.45966 1.44358 1.45226 1.51005 1.72286 2.07806 2.49231 2.54595 3.36462 3.74422 3.75669 3.81369 3.90593 4.00289 4.02577 4.09411 4.20398 4.27269 4.43710 4.60153 4.66975 4.67890 4.79884 4.81544 4.84519 4.89588 4.91981 4.95178 5.01107 5.12896 5.15348 5.32287 5.43055 5.51272 5.52683 5.60441 5.63172 5.72210 5.83938 6.05709 6.29246 6.68323 7.35059 7.35961 8.09902 8.33640 9.27159 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.004162 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.718570 B = 6725.900581 C = 7706.301386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.149 4.149 3 C -0.107 4.107 4 C -0.117 4.117 5 C -0.143 4.143 6 C -0.108 4.108 7 C 0.507 3.493 8 O -0.594 6.594 9 N -0.703 5.703 10 C 0.130 3.870 11 C 0.159 3.841 12 N -0.705 5.705 13 C -0.225 4.225 14 H 0.063 0.937 15 C -0.065 4.065 16 N -0.961 5.961 17 Si 0.956 3.044 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.281 1.281 21 C -0.154 4.154 22 C -0.121 4.121 23 C -0.125 4.125 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.378 0.622 37 H 0.250 0.750 38 H 0.093 0.907 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.545 -0.189 -3.797 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.107 4.107 4 C -0.174 4.174 5 C -0.161 4.161 6 C -0.147 4.147 7 C 0.295 3.705 8 O -0.475 6.475 9 N -0.352 5.352 10 C 0.003 3.997 11 C 0.067 3.933 12 N -0.344 5.344 13 C -0.357 4.357 14 H 0.081 0.919 15 C -0.257 4.257 16 N -0.612 5.612 17 Si 0.787 3.213 18 H -0.215 1.215 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.194 4.194 22 C -0.159 4.159 23 C -0.163 4.163 24 H 0.126 0.874 25 H 0.136 0.864 26 H 0.143 0.857 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.145 0.855 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.211 0.789 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.318 0.639 -4.295 19.800 hybrid contribution 1.489 0.394 0.848 1.758 sum -17.829 1.034 -3.446 18.189 Atomic orbital electron populations 1.24662 0.95211 1.03230 0.97407 1.22099 0.96050 0.96068 1.02463 1.20831 0.93699 0.95767 1.00398 1.20832 1.00295 0.93503 1.02737 1.22735 0.94428 0.97420 1.01530 1.20823 0.96449 0.99207 0.98243 1.21185 0.82474 0.82135 0.84722 1.90637 1.72727 1.33686 1.50484 1.45772 1.33881 1.18079 1.37516 1.21598 0.88876 0.99062 0.90142 1.21101 0.91093 0.92602 0.88477 1.42097 1.39376 1.28452 1.24472 1.19250 1.07626 0.99907 1.08915 0.91941 1.25299 1.01589 0.99876 0.98980 1.69754 1.40502 1.31618 1.19317 0.85472 0.79654 0.79273 0.76937 1.21467 1.21927 1.20757 1.23409 1.00215 0.97744 0.98067 1.22556 0.97775 0.95500 1.00055 1.23109 0.97689 0.94854 1.00658 0.87402 0.86403 0.85694 0.90421 0.92353 0.90251 0.88203 0.86926 0.85518 0.75519 0.91444 0.95275 0.78862 0.94105 0.88901 0.93862 0.92239 0.89572 0.91179 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 14.07 66.64 0.94 -1.36 16 2 C -0.15 -2.62 9.31 23.43 0.22 -2.40 16 3 C -0.11 -2.29 5.98 -18.71 -0.11 -2.40 16 4 C -0.12 -2.06 9.39 71.23 0.67 -1.40 16 5 C -0.14 -3.66 8.43 24.51 0.21 -3.45 16 6 C -0.11 -2.63 5.95 29.10 0.17 -2.46 16 7 C 0.51 16.91 7.82 87.66 0.69 17.60 16 8 O -0.59 -24.95 16.03 -3.03 -0.05 -25.00 16 9 N -0.70 -22.55 5.41 -463.06 -2.51 -25.06 16 10 C 0.13 4.72 5.11 86.38 0.44 5.16 16 11 C 0.16 5.70 0.88 4.13 0.00 5.70 16 12 N -0.70 -32.71 5.22 -300.96 -1.57 -34.28 16 13 C -0.22 -12.13 9.28 84.03 0.78 -11.35 16 14 H 0.06 3.42 7.19 -2.91 -0.02 3.40 16 15 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 16 N -0.96 -56.82 13.06 21.65 0.28 -56.53 16 17 Si 0.96 46.67 29.55 68.60 2.03 48.70 16 18 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 19 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 21 C -0.15 -5.14 7.33 31.12 0.23 -4.91 16 22 C -0.12 -3.50 7.99 31.12 0.25 -3.25 16 23 C -0.13 -3.42 6.78 31.12 0.21 -3.21 16 24 H 0.11 1.29 6.30 -2.91 -0.02 1.27 16 25 H 0.12 1.19 8.06 -2.91 -0.02 1.16 16 26 H 0.13 1.93 5.82 -2.91 -0.02 1.92 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.12 8.07 -2.38 -0.02 1.10 16 29 H 0.08 1.15 6.65 -2.39 -0.02 1.13 16 30 H 0.10 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.13 2.33 5.32 -2.39 -0.01 2.31 16 33 H 0.41 11.40 8.09 -92.71 -0.75 10.65 16 34 H 0.07 2.25 7.94 -2.38 -0.02 2.23 16 35 H 0.03 1.30 7.12 -2.39 -0.02 1.28 16 36 H 0.38 18.71 7.84 -92.71 -0.73 17.98 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.09 2.62 7.96 -2.38 -0.02 2.60 16 39 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 1.89 8.09 -2.38 -0.02 1.87 16 43 H 0.11 2.36 8.10 -2.39 -0.02 2.34 16 Total: -1.00 -68.41 353.99 2.87 -65.53 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.47 Total: 37.55 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 5.16 Total: -10.90 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -3.79 Total: -115.88 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.05 Total: -25.00 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -68.41 2.87 -65.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501989754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.630 kcal (2) G-P(sol) polarization free energy of solvation -68.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds